Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:78892494-82252499

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929 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Gga1 15 78877190 to 78894585 17395 + protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 1
Tssr132004 15 78899408 to 78899422 14 + TSS region transcription start site region 132004
Cpgi7304 15 78899419 to 78900261 842 CpG island CpG island 7304
Tssr135297 15 78899665 to 78899716 51 - TSS region transcription start site region 135297
Gm49510 15 78899667 to 78919032 19365 + protein coding gene predicted gene, 49510
Tssr132005 15 78899755 to 78899775 20 + TSS region transcription start site region 132005
Sh3bp1 15 78899768 to 78912051 12283 + protein coding gene SH3-domain binding protein 1
Tssr132006 15 78899783 to 78899815 32 + TSS region transcription start site region 132006
Tssr4652 15 78899822 to 78899827 5 + TSS region transcription start site region 4652
Tssr132007 15 78899844 to 78899853 9 + TSS region transcription start site region 132007
Tssr132008 15 78905790 to 78905801 11 + TSS region transcription start site region 132008
Tssr132009 15 78908425 to 78908470 45 + TSS region transcription start site region 132009
Tssr132010 15 78911488 to 78911516 28 + TSS region transcription start site region 132010
1700027A07Rik 15 78911966 to 78913660 1694 - antisense lncRNA gene RIKEN cDNA 1700027A07 gene
Cpgi7305 15 78913312 to 78914887 1575 CpG island CpG island 7305
Tssr132011 15 78913907 to 78913910 3 + TSS region transcription start site region 132011
Tssr132012 15 78913916 to 78913927 11 + TSS region transcription start site region 132012
Pdxp 15 78913919 to 78919517 5598 + protein coding gene pyridoxal (pyridoxine, vitamin B6) phosphatase
Tssr132013 15 78913931 to 78913966 35 + TSS region transcription start site region 132013
Tssr132014 15 78914370 to 78914406 36 + TSS region transcription start site region 132014
Tssr132015 15 78914408 to 78914475 67 + TSS region transcription start site region 132015
Gm30368 15 78919620 to 78928144 8524 - lncRNA gene predicted gene, 30368
Tssr135298 15 78924989 to 78924991 2 - TSS region transcription start site region 135298
Tssr132016 15 78926720 to 78926735 15 + TSS region transcription start site region 132016
Lgals1 15 78926725 to 78930465 3740 + protein coding gene lectin, galactose binding, soluble 1
Tssr135299 15 78927258 to 78927269 11 - TSS region transcription start site region 135299
Cpgi7306 15 78927941 to 78928305 364 CpG island CpG island 7306
Tssr132017 15 78928368 to 78928399 31 + TSS region transcription start site region 132017
Tssr132018 15 78929176 to 78929208 32 + TSS region transcription start site region 132018
Tssr132019 15 78929644 to 78929686 42 + TSS region transcription start site region 132019
Tssr135300 15 78929734 to 78929748 14 - TSS region transcription start site region 135300
Tssr132020 15 78930151 to 78930170 19 + TSS region transcription start site region 132020
Cpgi7307 15 78934781 to 78935518 737 CpG island CpG island 7307
Tssr132021 15 78934919 to 78934992 73 + TSS region transcription start site region 132021
Nol12 15 78934933 to 78941910 6977 + protein coding gene nucleolar protein 12
Tssr132022 15 78935177 to 78935221 44 + TSS region transcription start site region 132022
Cpgi7308 15 78947640 to 78948145 505 CpG island CpG island 7308
Triobp 15 78947724 to 79005869 58145 + protein coding gene TRIO and F-actin binding protein
Tssr132023 15 78947890 to 78947897 7 + TSS region transcription start site region 132023
Tssr132024 15 78947911 to 78947934 23 + TSS region transcription start site region 132024
Tssr132025 15 78947937 to 78947946 9 + TSS region transcription start site region 132025
Tssr132026 15 78947947 to 78947960 13 + TSS region transcription start site region 132026
Tssr4653 15 78959928 to 78959939 11 + TSS region transcription start site region 4653
Tssr132027 15 78959942 to 78959962 20 + TSS region transcription start site region 132027
Tssr132028 15 78967332 to 78967335 3 + TSS region transcription start site region 132028
Tssr132029 15 78967497 to 78967500 3 + TSS region transcription start site region 132029
Cpgi7309 15 78967620 to 78968195 575 CpG island CpG island 7309
Tssr4654 15 78973055 to 78973063 8 + TSS region transcription start site region 4654
Cpgi7310 15 78982496 to 78983632 1136 CpG island CpG island 7310
Tssr132030 15 78983048 to 78983120 72 + TSS region transcription start site region 132030
Tssr132031 15 78987083 to 78987103 20 + TSS region transcription start site region 132031
Tssr132032 15 78987104 to 78987120 16 + TSS region transcription start site region 132032
Tssr132033 15 78987127 to 78987137 10 + TSS region transcription start site region 132033
Gm10865 15 78994955 to 79011041 16086 - antisense lncRNA gene predicted gene 10865
Mir6956 15 79002223 to 79002284 61 + miRNA gene microRNA 6956
Tssr132034 15 79002252 to 79002263 11 + TSS region transcription start site region 132034
Tssr132035 15 79002280 to 79002296 16 + TSS region transcription start site region 132035
Tssr132036 15 79002298 to 79002316 18 + TSS region transcription start site region 132036
Tssr132037 15 79002319 to 79002331 12 + TSS region transcription start site region 132037
Tssr132038 15 79002338 to 79002352 14 + TSS region transcription start site region 132038
Tssr132039 15 79005238 to 79005318 80 + TSS region transcription start site region 132039
Tssr132040 15 79005474 to 79005491 17 + TSS region transcription start site region 132040
D15Mit119 15 79014192 to 79014316 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 119
Gm17753 15 79016210 to 79026067 9857 - lincRNA gene predicted gene, 17753
Tssr135301 15 79025864 to 79025867 3 - TSS region transcription start site region 135301
Tssr135302 15 79025914 to 79025926 12 - TSS region transcription start site region 135302
Gm49544 15 79026456 to 79028612 2156 - antisense lncRNA gene predicted gene, 49544
Tssr132041 15 79026991 to 79027005 14 + TSS region transcription start site region 132041
Cpgi7311 15 79027588 to 79029101 1513 CpG island CpG island 7311
Tssr132042 15 79028442 to 79028456 14 + TSS region transcription start site region 132042
H1f0 15 79028450 to 79030504 2054 + protein coding gene H1 histone family, member 0
Tssr132043 15 79028471 to 79028482 11 + TSS region transcription start site region 132043
Tssr132044 15 79028530 to 79028543 13 + TSS region transcription start site region 132044
Tssr135303 15 79028789 to 79028854 65 - TSS region transcription start site region 135303
Tssr135304 15 79028889 to 79028915 26 - TSS region transcription start site region 135304
Tssr135305 15 79029124 to 79029174 50 - TSS region transcription start site region 135305
Tssr132045 15 79029302 to 79029334 32 + TSS region transcription start site region 132045
Cpgi7312 15 79030515 to 79031257 742 CpG island CpG island 7312
Tssr132046 15 79030849 to 79030859 10 + TSS region transcription start site region 132046
Gcat 15 79030874 to 79042531 11657 + protein coding gene glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Tssr132047 15 79030885 to 79030933 48 + TSS region transcription start site region 132047
Tssr132048 15 79030945 to 79030952 7 + TSS region transcription start site region 132048
Cpgi7313 15 79037708 to 79038113 405 CpG island CpG island 7313
Cpgi7314 15 79040585 to 79040843 258 CpG island CpG island 7314
Galr3 15 79041885 to 79043558 1673 + protein coding gene galanin receptor 3
Cpgi7315 15 79042046 to 79043717 1671 CpG island CpG island 7315
Gm3924 15 79045599 to 79051176 5577 - lincRNA gene predicted gene 3924
Ankrd54 15 79053094 to 79062893 9799 - protein coding gene ankyrin repeat domain 54
Cpgi7316 15 79062226 to 79063234 1008 CpG island CpG island 7316
Tssr135306 15 79062675 to 79062691 16 - TSS region transcription start site region 135306
Tssr135307 15 79062703 to 79062706 3 - TSS region transcription start site region 135307
Tssr135308 15 79062719 to 79062756 37 - TSS region transcription start site region 135308
Tssr135309 15 79062763 to 79062770 7 - TSS region transcription start site region 135309
Tssr135310 15 79062866 to 79062941 75 - TSS region transcription start site region 135310
Gm49471 15 79064661 to 79065948 1287 + unclassified gene predicted gene, 49471
4930563H03Rik 15 79074718 to 79075128 410 unclassified gene RIKEN cDNA 4930563H03 gene
Cpgi7317 15 79075009 to 79075646 637 CpG island CpG island 7317
Tssr132049 15 79075209 to 79075245 36 + TSS region transcription start site region 132049
Eif3l 15 79075223 to 79094400 19177 + protein coding gene eukaryotic translation initiation factor 3, subunit L
Tssr132050 15 79081579 to 79081625 46 + TSS region transcription start site region 132050
Tssr132051 15 79081864 to 79081879 15 + TSS region transcription start site region 132051
Tssr132052 15 79085575 to 79085595 20 + TSS region transcription start site region 132052
Tssr132053 15 79089592 to 79089644 52 + TSS region transcription start site region 132053
Gm25072 15 79094823 to 79095057 234 - unclassified non-coding RNA gene predicted gene, 25072
Cpgi7318 15 79108394 to 79109773 1379 CpG island CpG island 7318
Tssr135311 15 79108604 to 79108625 21 - TSS region transcription start site region 135311
Tssr132054 15 79108728 to 79108780 52 + TSS region transcription start site region 132054
Tssr132055 15 79108868 to 79108885 17 + TSS region transcription start site region 132055
Micall1 15 79108898 to 79136900 28002 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing -like 1
Tssr132056 15 79108911 to 79108982 71 + TSS region transcription start site region 132056
Tssr135312 15 79109001 to 79109002 1 - TSS region transcription start site region 135312
Tssr132057 15 79109055 to 79109074 19 + TSS region transcription start site region 132057
Tssr132058 15 79109079 to 79109088 9 + TSS region transcription start site region 132058
Tssr132059 15 79109094 to 79109106 12 + TSS region transcription start site region 132059
Tssr132060 15 79109120 to 79109134 14 + TSS region transcription start site region 132060
Tssr132061 15 79109145 to 79109180 35 + TSS region transcription start site region 132061
Tssr132062 15 79109187 to 79109209 22 + TSS region transcription start site region 132062
Tssr135313 15 79109425 to 79109437 12 - TSS region transcription start site region 135313
Tssr132063 15 79124481 to 79124518 37 + TSS region transcription start site region 132063
Tssr132064 15 79131713 to 79131749 36 + TSS region transcription start site region 132064
1700088E04Rik 15 79134655 to 79141251 6596 - protein coding gene RIKEN cDNA 1700088E04 gene
D15Mit260 15 79135542 to 79135768 226 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 260
Cpgi7319 15 79140803 to 79141647 844 CpG island CpG island 7319
Tssr135314 15 79141197 to 79141268 71 - TSS region transcription start site region 135314
Tssr132065 15 79141310 to 79141321 11 + TSS region transcription start site region 132065
Tssr132066 15 79141324 to 79141358 34 + TSS region transcription start site region 132066
Polr2f 15 79141325 to 79151774 10449 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide F
Tssr132067 15 79141364 to 79141390 26 + TSS region transcription start site region 132067
Tssr132068 15 79144621 to 79144636 15 + TSS region transcription start site region 132068
Sox10 15 79154913 to 79164490 9577 - protein coding gene SRY (sex determining region Y)-box 10
Tssr135315 15 79156533 to 79156546 13 - TSS region transcription start site region 135315
Cpgi7320 15 79162843 to 79164393 1550 CpG island CpG island 7320
Tssr135316 15 79163858 to 79163869 11 - TSS region transcription start site region 135316
Tssr135317 15 79164477 to 79164496 19 - TSS region transcription start site region 135317
Tssr132069 15 79166034 to 79166063 29 + TSS region transcription start site region 132069
Gm10863 15 79166066 to 79216401 50335 + lncRNA gene predicted gene 10863
Tssr132070 15 79208977 to 79209012 35 + TSS region transcription start site region 132070
Cpgi7321 15 79209088 to 79209430 342 CpG island CpG island 7321
Tssr132071 15 79209206 to 79209239 33 + TSS region transcription start site region 132071
Tssr132072 15 79209243 to 79209263 20 + TSS region transcription start site region 132072
Tssr132073 15 79209279 to 79209294 15 + TSS region transcription start site region 132073
Tssr132074 15 79209305 to 79209317 12 + TSS region transcription start site region 132074
Tssr132075 15 79209354 to 79209376 22 + TSS region transcription start site region 132075
Tssr132076 15 79209383 to 79209412 29 + TSS region transcription start site region 132076
Tssr132077 15 79212756 to 79212766 10 + TSS region transcription start site region 132077
Gm30527 15 79225254 to 79229022 3768 - lncRNA gene predicted gene, 30527
4930500E03Rik 15 79228202 to 79229364 1162 unclassified gene RIKEN cDNA 4930500E03 gene
Cpgi7322 15 79229083 to 79229802 719 CpG island CpG island 7322
Tssr132078 15 79229140 to 79229162 22 + TSS region transcription start site region 132078
Pick1 15 79229160 to 79249466 20306 + protein coding gene protein interacting with C kinase 1
Tssr132079 15 79229363 to 79229439 76 + TSS region transcription start site region 132079
Gm49486 15 79229391 to 79256674 27283 + protein coding gene predicted gene, 49486
Tssr132080 15 79229449 to 79229460 11 + TSS region transcription start site region 132080
Tssr132081 15 79247150 to 79247152 2 + TSS region transcription start site region 132081
Slc16a8 15 79251016 to 79254748 3732 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 8
Cpgi7323 15 79251486 to 79253010 1524 CpG island CpG island 7323
Cpgi7324 15 79253565 to 79253743 178 CpG island CpG island 7324
Tssr135318 15 79254737 to 79254764 27 - TSS region transcription start site region 135318
Lgals1-ps2 15 79255574 to 79256092 518 + pseudogene lectin, galactose binding, soluble 1, pseudogene 2
Baiap2l2 15 79258195 to 79285532 27337 - protein coding gene BAI1-associated protein 2-like 2
Cpgi7325 15 79258560 to 79258740 180 CpG island CpG island 7325
Tssr135319 15 79258614 to 79258647 33 - TSS region transcription start site region 135319
Cpgi7326 15 79260773 to 79262193 1420 CpG island CpG island 7326
Tssr135320 15 79261277 to 79261309 32 - TSS region transcription start site region 135320
Tssr135321 15 79265783 to 79265792 9 - TSS region transcription start site region 135321
D15Mit238 15 79269828 to 79269948 120 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 238
Cpgi7327 15 79270363 to 79270757 394 CpG island CpG island 7327
Cpgi7328 15 79271152 to 79271339 187 CpG island CpG island 7328
Tssr135322 15 79283534 to 79283582 48 - TSS region transcription start site region 135322
Tssr135323 15 79285420 to 79285435 15 - TSS region transcription start site region 135323
Tssr135324 15 79285450 to 79285465 15 - TSS region transcription start site region 135324
Tssr135325 15 79285470 to 79285498 28 - TSS region transcription start site region 135325
Tssr135326 15 79285502 to 79285516 14 - TSS region transcription start site region 135326
Pla2g6 15 79286228 to 79328390 42162 - protein coding gene phospholipase A2, group VI
Gm41358 15 79310515 to 79311388 873 + lncRNA gene predicted gene, 41358
Gm20420 15 79314196 to 79316658 2462 + antisense lncRNA gene predicted gene 20420
Tssr135327 15 79323335 to 79323349 14 - TSS region transcription start site region 135327
Tssr132082 15 79327583 to 79327594 11 + TSS region transcription start site region 132082
2310026G15Rik 15 79327626 to 79328715 1089 unclassified gene RIKEN cDNA 2310026G15 gene
Cpgi7329 15 79327799 to 79328538 739 CpG island CpG island 7329
Tssr135328 15 79328126 to 79328150 24 - TSS region transcription start site region 135328
Tssr135329 15 79328154 to 79328191 37 - TSS region transcription start site region 135329
Tssr135330 15 79328201 to 79328261 60 - TSS region transcription start site region 135330
Tssr135331 15 79334356 to 79334357 1 - TSS region transcription start site region 135331
Tssr132083 15 79346608 to 79346617 9 + TSS region transcription start site region 132083
Maff 15 79346621 to 79359076 12455 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
Cpgi7330 15 79346989 to 79348612 1623 CpG island CpG island 7330
Tssr132084 15 79347534 to 79347556 22 + TSS region transcription start site region 132084
Tssr132085 15 79347567 to 79347578 11 + TSS region transcription start site region 132085
Tssr132086 15 79347583 to 79347598 15 + TSS region transcription start site region 132086
Tssr132087 15 79347599 to 79347614 15 + TSS region transcription start site region 132087
Tssr132088 15 79347630 to 79347644 14 + TSS region transcription start site region 132088
Tssr132089 15 79347937 to 79348030 93 + TSS region transcription start site region 132089
Tssr132090 15 79348129 to 79348154 25 + TSS region transcription start site region 132090
Tssr135332 15 79348185 to 79348207 22 - TSS region transcription start site region 135332
Tssr132091 15 79348391 to 79348407 16 + TSS region transcription start site region 132091
Tssr132092 15 79348421 to 79348432 11 + TSS region transcription start site region 132092
Cpgi7331 15 79356992 to 79358584 1592 CpG island CpG island 7331