Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:77879358-79109369

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483 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq2 15 3460212 to 78717086 75256874 QTL subcutaneous fat pad weight QTL 2
Tailaq4 15 3460212 to 78717086 75256874 QTL tail length adjusted QTL 4
Tailq6 15 3460212 to 78717086 75256874 QTL tail length QTL 6
W3q7 15 3460212 to 78717086 75256874 QTL weight 3 weeks QTL 7
Epfpq4 15 3460212 to 78717086 75256874 QTL epididymal fat percentage QTL 4
Tssr131882 15 77881969 to 77882008 39 + TSS region transcription start site region 131882
Cpgi7276 15 77905307 to 77905622 315 CpG island CpG island 7276
Tssr135141 15 77905382 to 77905399 17 - TSS region transcription start site region 135141
Tssr131883 15 77905554 to 77905596 42 + TSS region transcription start site region 131883
Tssr131884 15 77905621 to 77905634 13 + TSS region transcription start site region 131884
Tssr131885 15 77906034 to 77906041 7 + TSS region transcription start site region 131885
Tssr131886 15 77911330 to 77911341 11 + TSS region transcription start site region 131886
Txn2 15 77915051 to 77928994 13943 - protein coding gene thioredoxin 2
Tssr135142 15 77915368 to 77915413 45 - TSS region transcription start site region 135142
Tssr135143 15 77915436 to 77915454 18 - TSS region transcription start site region 135143
Tssr135144 15 77915632 to 77915651 19 - TSS region transcription start site region 135144
Tssr135145 15 77915675 to 77915697 22 - TSS region transcription start site region 135145
Tssr135146 15 77915721 to 77915739 18 - TSS region transcription start site region 135146
Tssr135147 15 77927863 to 77927895 32 - TSS region transcription start site region 135147
Cpgi7277 15 77928611 to 77929212 601 CpG island CpG island 7277
Tssr135148 15 77928697 to 77928717 20 - TSS region transcription start site region 135148
Tssr135149 15 77928925 to 77929011 86 - TSS region transcription start site region 135149
Tssr131887 15 77929229 to 77929250 21 + TSS region transcription start site region 131887
Tssr4646 15 77933618 to 77933642 24 - TSS region transcription start site region 4646
Foxred2 15 77940522 to 77956722 16200 - protein coding gene FAD-dependent oxidoreductase domain containing 2
Tssr4647 15 77942122 to 77942126 4 - TSS region transcription start site region 4647
Tssr135150 15 77945717 to 77945733 16 - TSS region transcription start site region 135150
Tssr135151 15 77945765 to 77945780 15 - TSS region transcription start site region 135151
Tssr135152 15 77945790 to 77945800 10 - TSS region transcription start site region 135152
Tssr135153 15 77945872 to 77945894 22 - TSS region transcription start site region 135153
Cpgi7278 15 77955573 to 77956949 1376 CpG island CpG island 7278
Tssr135154 15 77956448 to 77956469 21 - TSS region transcription start site region 135154
Tssr135155 15 77956658 to 77956723 65 - TSS region transcription start site region 135155
Tssr131888 15 77956795 to 77956808 13 + TSS region transcription start site region 131888
Eif3d 15 77958998 to 77970813 11815 - protein coding gene eukaryotic translation initiation factor 3, subunit D
Gm17638 15 77961674 to 77967126 5452 + antisense lncRNA gene predicted gene, 17638
Tssr131889 15 77966673 to 77966696 23 + TSS region transcription start site region 131889
Tssr135156 15 77967592 to 77967599 7 - TSS region transcription start site region 135156
Tssr135157 15 77969768 to 77969774 6 - TSS region transcription start site region 135157
Cpgi7279 15 77970149 to 77971479 1330 CpG island CpG island 7279
Tssr135158 15 77970512 to 77970561 49 - TSS region transcription start site region 135158
Tssr135159 15 77970730 to 77970743 13 - TSS region transcription start site region 135159
Tssr135160 15 77970750 to 77970824 74 - TSS region transcription start site region 135160
Cacng2 15 77991919 to 78119474 127555 - protein coding gene calcium channel, voltage-dependent, gamma subunit 2
Tssr135161 15 77991982 to 77992006 24 - TSS region transcription start site region 135161
Tssr135162 15 77994898 to 77994904 6 - TSS region transcription start site region 135162
Cpgi7280 15 77995060 to 77995766 706 CpG island CpG island 7280
Tssr135163 15 77995069 to 77995085 16 - TSS region transcription start site region 135163
Tssr135164 15 77995090 to 77995107 17 - TSS region transcription start site region 135164
Gm46520 15 78012298 to 78054407 42109 + lncRNA gene predicted gene, 46520
Tssr131890 15 78044111 to 78044118 7 + TSS region transcription start site region 131890
Tssr131891 15 78044136 to 78044147 11 + TSS region transcription start site region 131891
Cpgi7281 15 78096328 to 78096482 154 CpG island CpG island 7281
Cpgi7282 15 78119225 to 78120296 1071 CpG island CpG island 7282
Tssr135165 15 78119580 to 78119624 44 - TSS region transcription start site region 135165
Tssr135166 15 78119629 to 78119652 23 - TSS region transcription start site region 135166
A730060N03Rik 15 78119706 to 78144142 24436 + antisense lncRNA gene RIKEN cDNA A730060N03 gene
Tssr135167 15 78119954 to 78120005 51 - TSS region transcription start site region 135167
Tssr135168 15 78120011 to 78120033 22 - TSS region transcription start site region 135168
Tssr135169 15 78120163 to 78120184 21 - TSS region transcription start site region 135169
Tssr135170 15 78120188 to 78120241 53 - TSS region transcription start site region 135170
D15Let8 15 78149844 to 78149990 146 DNA segment DNA segment, Chr. 15, Verity A. Letts 8
Ift27 15 78159463 to 78174107 14644 - protein coding gene intraflagellar transport 27
Tssr131892 15 78163631 to 78163645 14 + TSS region transcription start site region 131892
D15Let9 15 78167446 to 78167629 183 DNA segment DNA segment, Chr. 15, Verity A. Letts 8
Tssr135171 15 78172415 to 78172459 44 - TSS region transcription start site region 135171
Cpgi7283 15 78173604 to 78174586 982 CpG island CpG island 7283
Tssr135172 15 78173827 to 78173840 13 - TSS region transcription start site region 135172
Tssr135173 15 78173926 to 78173947 21 - TSS region transcription start site region 135173
Tssr135174 15 78173956 to 78173988 32 - TSS region transcription start site region 135174
Tssr135175 15 78174026 to 78174089 63 - TSS region transcription start site region 135175
Tssr135176 15 78174090 to 78174109 19 - TSS region transcription start site region 135176
Gm49694 15 78174461 to 78174851 390 + lincRNA gene predicted gene, 49694
Pvalb 15 78191117 to 78206351 15234 - protein coding gene parvalbumin
Tssr135177 15 78191553 to 78191562 9 - TSS region transcription start site region 135177
Tssr135178 15 78191626 to 78191627 1 - TSS region transcription start site region 135178
Tssr135179 15 78191629 to 78191665 36 - TSS region transcription start site region 135179
Tssr135180 15 78191691 to 78191702 11 - TSS region transcription start site region 135180
Tssr135181 15 78200677 to 78200681 4 - TSS region transcription start site region 135181
Tssr135182 15 78201672 to 78201683 11 - TSS region transcription start site region 135182
Cpgi7284 15 78203987 to 78204588 601 CpG island CpG island 7284
Tssr135183 15 78204148 to 78204198 50 - TSS region transcription start site region 135183
Tssr135184 15 78204228 to 78204239 11 - TSS region transcription start site region 135184
Tssr135185 15 78204429 to 78204450 21 - TSS region transcription start site region 135185
Tssr135186 15 78206391 to 78206407 16 - TSS region transcription start site region 135186
Tssr135187 15 78242718 to 78242738 20 - TSS region transcription start site region 135187
Tssr131893 15 78244759 to 78244778 19 + TSS region transcription start site region 131893
Tssr131894 15 78244781 to 78244837 56 + TSS region transcription start site region 131894
Ncf4 15 78244801 to 78262580 17779 + protein coding gene neutrophil cytosolic factor 4
Tssr135188 15 78244839 to 78244850 11 - TSS region transcription start site region 135188
Tssr131895 15 78244853 to 78244866 13 + TSS region transcription start site region 131895
Tssr131896 15 78244948 to 78245006 58 + TSS region transcription start site region 131896
Tssr131897 15 78245020 to 78245051 31 + TSS region transcription start site region 131897
Tssr135189 15 78246241 to 78246270 29 - TSS region transcription start site region 135189
Tssr135190 15 78246273 to 78246299 26 - TSS region transcription start site region 135190
Tssr131898 15 78246408 to 78246440 32 + TSS region transcription start site region 131898
Tssr131899 15 78247438 to 78247456 18 + TSS region transcription start site region 131899
Tssr135191 15 78247721 to 78247763 42 - TSS region transcription start site region 135191
Tssr131900 15 78247931 to 78247953 22 + TSS region transcription start site region 131900
Tssr131901 15 78248059 to 78248073 14 + TSS region transcription start site region 131901
Tssr131902 15 78250615 to 78250629 14 + TSS region transcription start site region 131902
Tssr131903 15 78250888 to 78250902 14 + TSS region transcription start site region 131903
Tssr131904 15 78253221 to 78253233 12 + TSS region transcription start site region 131904
Tssr131905 15 78253272 to 78253303 31 + TSS region transcription start site region 131905
Cpgi7285 15 78254736 to 78255018 282 CpG island CpG island 7285
Tssr131906 15 78254864 to 78254894 30 + TSS region transcription start site region 131906
Tssr131907 15 78260688 to 78260707 19 + TSS region transcription start site region 131907
Tssr131908 15 78260902 to 78260927 25 + TSS region transcription start site region 131908
Tssr131909 15 78261269 to 78261308 39 + TSS region transcription start site region 131909
Tssr131910 15 78261351 to 78261365 14 + TSS region transcription start site region 131910
Tssr131911 15 78261469 to 78261498 29 + TSS region transcription start site region 131911
Csf2rb2 15 78282507 to 78305721 23214 - protein coding gene colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)
Tssr135192 15 78283046 to 78283059 13 - TSS region transcription start site region 135192
Tssr135193 15 78284120 to 78284151 31 - TSS region transcription start site region 135193
Tssr135194 15 78284164 to 78284189 25 - TSS region transcription start site region 135194
Tssr135195 15 78284340 to 78284351 11 - TSS region transcription start site region 135195
Tssr135196 15 78284377 to 78284412 35 - TSS region transcription start site region 135196
Mir7676-1 15 78284788 to 78284849 61 - miRNA gene microRNA 7676-1
Tssr135197 15 78285144 to 78285174 30 - TSS region transcription start site region 135197
Tssr135198 15 78285215 to 78285252 37 - TSS region transcription start site region 135198
Tssr135199 15 78287946 to 78287968 22 - TSS region transcription start site region 135199
Tssr135200 15 78291656 to 78291682 26 - TSS region transcription start site region 135200
Tssr135201 15 78297009 to 78297020 11 - TSS region transcription start site region 135201
Tssr135202 15 78298080 to 78298092 12 - TSS region transcription start site region 135202
Tssr135203 15 78298179 to 78298204 25 - TSS region transcription start site region 135203
Tssr135204 15 78305638 to 78305670 32 - TSS region transcription start site region 135204
Tssr135205 15 78305717 to 78305730 13 - TSS region transcription start site region 135205
Tssr135206 15 78314517 to 78314530 13 - TSS region transcription start site region 135206
Tssr131912 15 78317047 to 78317059 12 + TSS region transcription start site region 131912
Tssr131913 15 78325723 to 78325750 27 + TSS region transcription start site region 131913
Csf2rb 15 78325798 to 78351001 25203 + protein coding gene colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
Tssr131914 15 78325816 to 78325837 21 + TSS region transcription start site region 131914
Tssr131915 15 78325841 to 78325862 21 + TSS region transcription start site region 131915
Tssr131916 15 78326005 to 78326025 20 + TSS region transcription start site region 131916
Tssr131917 15 78326044 to 78326059 15 + TSS region transcription start site region 131917
Tssr131918 15 78329709 to 78329754 45 + TSS region transcription start site region 131918
Tssr131919 15 78331718 to 78331739 21 + TSS region transcription start site region 131919
Tssr131920 15 78331864 to 78331893 29 + TSS region transcription start site region 131920
Tssr131921 15 78334048 to 78334063 15 + TSS region transcription start site region 131921
Tssr131922 15 78335143 to 78335163 20 + TSS region transcription start site region 131922
Tssr131923 15 78335230 to 78335283 53 + TSS region transcription start site region 131923
Tssr131924 15 78335284 to 78335302 18 + TSS region transcription start site region 131924
Tssr131925 15 78336341 to 78336348 7 + TSS region transcription start site region 131925
Tssr135207 15 78336384 to 78336406 22 - TSS region transcription start site region 135207
Tssr135208 15 78336416 to 78336428 12 - TSS region transcription start site region 135208
Tssr131926 15 78336429 to 78336442 13 + TSS region transcription start site region 131926
Tssr131927 15 78337230 to 78337275 45 + TSS region transcription start site region 131927
Tssr131928 15 78341627 to 78341647 20 + TSS region transcription start site region 131928
Tssr131929 15 78342031 to 78342069 38 + TSS region transcription start site region 131929
Tssr131930 15 78344877 to 78344911 34 + TSS region transcription start site region 131930
Tssr131931 15 78345476 to 78345495 19 + TSS region transcription start site region 131931
Tssr131932 15 78348067 to 78348079 12 + TSS region transcription start site region 131932
Tssr131933 15 78348151 to 78348163 12 + TSS region transcription start site region 131933
Tssr131934 15 78348215 to 78348229 14 + TSS region transcription start site region 131934
Tssr131935 15 78348280 to 78348291 11 + TSS region transcription start site region 131935
Mir7676-2 15 78348599 to 78348660 61 + miRNA gene microRNA 7676-2
Tssr131936 15 78348946 to 78348959 13 + TSS region transcription start site region 131936
Tssr131937 15 78348973 to 78348984 11 + TSS region transcription start site region 131937
Tssr131938 15 78349027 to 78349070 43 + TSS region transcription start site region 131938
Tssr131939 15 78349095 to 78349119 24 + TSS region transcription start site region 131939
Tssr131940 15 78349168 to 78349193 25 + TSS region transcription start site region 131940
Tssr131941 15 78349262 to 78349282 20 + TSS region transcription start site region 131941
Tssr131942 15 78349300 to 78349311 11 + TSS region transcription start site region 131942
Gm26329 15 78369248 to 78369357 109 + unclassified non-coding RNA gene predicted gene, 26329
Tex33 15 78378400 to 78395912 17512 - protein coding gene testis expressed 33
Tssr135209 15 78388738 to 78388749 11 - TSS region transcription start site region 135209
Tssr135210 15 78388757 to 78388776 19 - TSS region transcription start site region 135210
Tssr135211 15 78390265 to 78390274 9 - TSS region transcription start site region 135211
Tssr135212 15 78395876 to 78395893 17 - TSS region transcription start site region 135212
Tssr135213 15 78395899 to 78395914 15 - TSS region transcription start site region 135213
Gm49481 15 78396001 to 78397184 1183 + bidirectional promoter lncRNA gene predicted gene, 49481
Tst 15 78399556 to 78405859 6303 - protein coding gene thiosulfate sulfurtransferase, mitochondrial
Tssr135214 15 78405356 to 78405381 25 - TSS region transcription start site region 135214
Cpgi7286 15 78405516 to 78406945 1429 CpG island CpG island 7286
Tssr135215 15 78405824 to 78405917 93 - TSS region transcription start site region 135215
Tssr135216 15 78405985 to 78405993 8 - TSS region transcription start site region 135216
Tssr131943 15 78406183 to 78406187 4 + TSS region transcription start site region 131943
Tssr135217 15 78406410 to 78406416 6 - TSS region transcription start site region 135217
Tssr131944 15 78406695 to 78406732 37 + TSS region transcription start site region 131944
Mpst 15 78406712 to 78414015 7303 + protein coding gene mercaptopyruvate sulfurtransferase
Tssr131945 15 78406777 to 78406796 19 + TSS region transcription start site region 131945
Tssr131946 15 78409713 to 78409728 15 + TSS region transcription start site region 131946
Tssr131947 15 78409739 to 78409748 9 + TSS region transcription start site region 131947
Tssr131948 15 78409760 to 78409776 16 + TSS region transcription start site region 131948
Cpgi7287 15 78409872 to 78410773 901 CpG island CpG island 7287
Tssr131949 15 78409910 to 78409922 12 + TSS region transcription start site region 131949
Tssr131950 15 78409954 to 78410038 84 + TSS region transcription start site region 131950
Tssr131951 15 78410279 to 78410284 5 + TSS region transcription start site region 131951
Gm41355 15 78416889 to 78426230 9341 + lncRNA gene predicted gene, 41355
Gm36644 15 78420496 to 78424193 3697 - lincRNA gene predicted gene, 36644
Cpgi7288 15 78428267 to 78429150 883 CpG island CpG island 7288
Tssr131952 15 78428447 to 78428457 10 + TSS region transcription start site region 131952
Kctd17 15 78428564 to 78439303 10739 + protein coding gene potassium channel tetramerisation domain containing 17
Tssr131953 15 78428625 to 78428636 11 + TSS region transcription start site region 131953
Tssr131954 15 78428650 to 78428671 21 + TSS region transcription start site region 131954
Tssr131955 15 78430117 to 78430127 10 + TSS region transcription start site region 131955
Cpgi7289 15 78436624 to 78437331 707 CpG island CpG island 7289
Tssr131956 15 78437112 to 78437145 33 + TSS region transcription start site region 131956
Tmprss6 15 78439667 to 78468634 28967 - protein coding gene transmembrane serine protease 6
Tssr131957 15 78449380 to 78449386 6 + TSS region transcription start site region 131957