Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:77857298-78209407

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7275 15 77857663 to 77858106 443 CpG island CpG island 7275
Tssr135139 15 77857752 to 77857765 13 - TSS region transcription start site region 135139
Tssr131881 15 77857922 to 77857940 18 + TSS region transcription start site region 131881
Tssr135140 15 77874941 to 77874967 26 - TSS region transcription start site region 135140
Tssr131882 15 77881969 to 77882008 39 + TSS region transcription start site region 131882
Cpgi7276 15 77905307 to 77905622 315 CpG island CpG island 7276
Tssr135141 15 77905382 to 77905399 17 - TSS region transcription start site region 135141
Tssr131883 15 77905554 to 77905596 42 + TSS region transcription start site region 131883
Tssr131884 15 77905621 to 77905634 13 + TSS region transcription start site region 131884
Tssr131885 15 77906034 to 77906041 7 + TSS region transcription start site region 131885
Tssr131886 15 77911330 to 77911341 11 + TSS region transcription start site region 131886
Txn2 15 77915051 to 77928994 13943 - protein coding gene thioredoxin 2
Tssr135142 15 77915368 to 77915413 45 - TSS region transcription start site region 135142
Tssr135143 15 77915436 to 77915454 18 - TSS region transcription start site region 135143
Tssr135144 15 77915632 to 77915651 19 - TSS region transcription start site region 135144
Tssr135145 15 77915675 to 77915697 22 - TSS region transcription start site region 135145
Tssr135146 15 77915721 to 77915739 18 - TSS region transcription start site region 135146
Tssr135147 15 77927863 to 77927895 32 - TSS region transcription start site region 135147
Cpgi7277 15 77928611 to 77929212 601 CpG island CpG island 7277
Tssr135148 15 77928697 to 77928717 20 - TSS region transcription start site region 135148
Tssr135149 15 77928925 to 77929011 86 - TSS region transcription start site region 135149
Tssr131887 15 77929229 to 77929250 21 + TSS region transcription start site region 131887
Tssr4646 15 77933618 to 77933642 24 - TSS region transcription start site region 4646
Foxred2 15 77940522 to 77956722 16200 - protein coding gene FAD-dependent oxidoreductase domain containing 2
Tssr4647 15 77942122 to 77942126 4 - TSS region transcription start site region 4647
Tssr135150 15 77945717 to 77945733 16 - TSS region transcription start site region 135150
Tssr135151 15 77945765 to 77945780 15 - TSS region transcription start site region 135151
Tssr135152 15 77945790 to 77945800 10 - TSS region transcription start site region 135152
Tssr135153 15 77945872 to 77945894 22 - TSS region transcription start site region 135153
Cpgi7278 15 77955573 to 77956949 1376 CpG island CpG island 7278
Tssr135154 15 77956448 to 77956469 21 - TSS region transcription start site region 135154
Tssr135155 15 77956658 to 77956723 65 - TSS region transcription start site region 135155
Tssr131888 15 77956795 to 77956808 13 + TSS region transcription start site region 131888
Eif3d 15 77958998 to 77970813 11815 - protein coding gene eukaryotic translation initiation factor 3, subunit D
Gm17638 15 77961674 to 77967126 5452 + antisense lncRNA gene predicted gene, 17638
Tssr131889 15 77966673 to 77966696 23 + TSS region transcription start site region 131889
Tssr135156 15 77967592 to 77967599 7 - TSS region transcription start site region 135156
Tssr135157 15 77969768 to 77969774 6 - TSS region transcription start site region 135157
Cpgi7279 15 77970149 to 77971479 1330 CpG island CpG island 7279
Tssr135158 15 77970512 to 77970561 49 - TSS region transcription start site region 135158
Tssr135159 15 77970730 to 77970743 13 - TSS region transcription start site region 135159
Tssr135160 15 77970750 to 77970824 74 - TSS region transcription start site region 135160
Cacng2 15 77991919 to 78119474 127555 - protein coding gene calcium channel, voltage-dependent, gamma subunit 2
Tssr135161 15 77991982 to 77992006 24 - TSS region transcription start site region 135161
Tssr135162 15 77994898 to 77994904 6 - TSS region transcription start site region 135162
Cpgi7280 15 77995060 to 77995766 706 CpG island CpG island 7280
Tssr135163 15 77995069 to 77995085 16 - TSS region transcription start site region 135163
Tssr135164 15 77995090 to 77995107 17 - TSS region transcription start site region 135164
Gm46520 15 78012298 to 78054407 42109 + lncRNA gene predicted gene, 46520
Tssr131890 15 78044111 to 78044118 7 + TSS region transcription start site region 131890
Tssr131891 15 78044136 to 78044147 11 + TSS region transcription start site region 131891
Cpgi7281 15 78096328 to 78096482 154 CpG island CpG island 7281
Cpgi7282 15 78119225 to 78120296 1071 CpG island CpG island 7282
Tssr135165 15 78119580 to 78119624 44 - TSS region transcription start site region 135165
Tssr135166 15 78119629 to 78119652 23 - TSS region transcription start site region 135166
A730060N03Rik 15 78119706 to 78144142 24436 + antisense lncRNA gene RIKEN cDNA A730060N03 gene
Tssr135167 15 78119954 to 78120005 51 - TSS region transcription start site region 135167
Tssr135168 15 78120011 to 78120033 22 - TSS region transcription start site region 135168
Tssr135169 15 78120163 to 78120184 21 - TSS region transcription start site region 135169
Tssr135170 15 78120188 to 78120241 53 - TSS region transcription start site region 135170
D15Let8 15 78149844 to 78149990 146 DNA segment DNA segment, Chr. 15, Verity A. Letts 8
Ift27 15 78159463 to 78174107 14644 - protein coding gene intraflagellar transport 27
Tssr131892 15 78163631 to 78163645 14 + TSS region transcription start site region 131892
D15Let9 15 78167446 to 78167629 183 DNA segment DNA segment, Chr. 15, Verity A. Letts 8
Tssr135171 15 78172415 to 78172459 44 - TSS region transcription start site region 135171
Cpgi7283 15 78173604 to 78174586 982 CpG island CpG island 7283
Tssr135172 15 78173827 to 78173840 13 - TSS region transcription start site region 135172
Tssr135173 15 78173926 to 78173947 21 - TSS region transcription start site region 135173
Tssr135174 15 78173956 to 78173988 32 - TSS region transcription start site region 135174
Tssr135175 15 78174026 to 78174089 63 - TSS region transcription start site region 135175
Tssr135176 15 78174090 to 78174109 19 - TSS region transcription start site region 135176
Gm49694 15 78174461 to 78174851 390 + lincRNA gene predicted gene, 49694
Pvalb 15 78191117 to 78206351 15234 - protein coding gene parvalbumin
Tssr135177 15 78191553 to 78191562 9 - TSS region transcription start site region 135177
Tssr135178 15 78191626 to 78191627 1 - TSS region transcription start site region 135178
Tssr135179 15 78191629 to 78191665 36 - TSS region transcription start site region 135179
Tssr135180 15 78191691 to 78191702 11 - TSS region transcription start site region 135180
Tssr135181 15 78200677 to 78200681 4 - TSS region transcription start site region 135181
Tssr135182 15 78201672 to 78201683 11 - TSS region transcription start site region 135182
Cpgi7284 15 78203987 to 78204588 601 CpG island CpG island 7284
Tssr135183 15 78204148 to 78204198 50 - TSS region transcription start site region 135183
Tssr135184 15 78204228 to 78204239 11 - TSS region transcription start site region 135184
Tssr135185 15 78204429 to 78204450 21 - TSS region transcription start site region 135185
Tssr135186 15 78206391 to 78206407 16 - TSS region transcription start site region 135186