Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:77146629-79236665

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658 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tailaq4 15 3460212 to 78717086 75256874 QTL tail length adjusted QTL 4
W3q7 15 3460212 to 78717086 75256874 QTL weight 3 weeks QTL 7
Epfpq4 15 3460212 to 78717086 75256874 QTL epididymal fat percentage QTL 4
Scfq2 15 3460212 to 78717086 75256874 QTL subcutaneous fat pad weight QTL 2
Tailq6 15 3460212 to 78717086 75256874 QTL tail length QTL 6
Rbfox2 15 77078990 to 77307004 228014 - protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 2
Tssr135071 15 77153602 to 77153611 9 - TSS region transcription start site region 135071
Tssr135072 15 77153639 to 77153648 9 - TSS region transcription start site region 135072
Tssr135073 15 77153673 to 77153674 1 - TSS region transcription start site region 135073
Tssr135074 15 77153696 to 77153724 28 - TSS region transcription start site region 135074
Tssr135075 15 77153726 to 77153750 24 - TSS region transcription start site region 135075
Tssr135076 15 77153772 to 77153817 45 - TSS region transcription start site region 135076
Tssr135077 15 77153905 to 77153963 58 - TSS region transcription start site region 135077
Tssr135078 15 77162907 to 77162915 8 - TSS region transcription start site region 135078
Tssr135079 15 77162974 to 77162985 11 - TSS region transcription start site region 135079
Tssr135080 15 77163070 to 77163086 16 - TSS region transcription start site region 135080
Tssr135081 15 77163095 to 77163114 19 - TSS region transcription start site region 135081
Tssr135082 15 77163116 to 77163177 61 - TSS region transcription start site region 135082
Tssr135083 15 77163336 to 77163339 3 - TSS region transcription start site region 135083
Gm49411 15 77175789 to 77178264 2475 - unclassified gene predicted gene, 49411
Tssr135084 15 77203286 to 77203304 18 - TSS region transcription start site region 135084
Tssr135085 15 77203575 to 77203583 8 - TSS region transcription start site region 135085
Tssr135086 15 77203763 to 77203776 13 - TSS region transcription start site region 135086
Gm24056 15 77242406 to 77242551 145 - snRNA gene predicted gene, 24056
Tssr135087 15 77245516 to 77245562 46 - TSS region transcription start site region 135087
Tssr135088 15 77245593 to 77245604 11 - TSS region transcription start site region 135088
Tssr135089 15 77257668 to 77257672 4 - TSS region transcription start site region 135089
D15Mit146 15 77257787 to 77257911 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 146
Cpgi7268 15 77305930 to 77307468 1538 CpG island CpG island 7268
Tssr135090 15 77306573 to 77306607 34 - TSS region transcription start site region 135090
Tssr135091 15 77306612 to 77306651 39 - TSS region transcription start site region 135091
Tssr135092 15 77306879 to 77306927 48 - TSS region transcription start site region 135092
Tssr135093 15 77306962 to 77306969 7 - TSS region transcription start site region 135093
Tssr135094 15 77307005 to 77307032 27 - TSS region transcription start site region 135094
Tssr135095 15 77307043 to 77307058 15 - TSS region transcription start site region 135095
Tssr135096 15 77307067 to 77307103 36 - TSS region transcription start site region 135096
Gm41352 15 77313609 to 77324452 10843 + lncRNA gene predicted gene, 41352
Cpgi7269 15 77336498 to 77336911 413 CpG island CpG island 7269
Cpgi7270 15 77343043 to 77343375 332 CpG island CpG island 7270
Tssr131861 15 77356456 to 77356500 44 + TSS region transcription start site region 131861
Tssr131862 15 77357097 to 77357100 3 + TSS region transcription start site region 131862
Tssr131863 15 77357952 to 77357954 2 + TSS region transcription start site region 131863
Cpgi7271 15 77358489 to 77358970 481 CpG island CpG island 7271
Gm49436 15 77365898 to 77366699 801 - unclassified gene predicted gene, 49436
Tssr135097 15 77367140 to 77367150 10 - TSS region transcription start site region 135097
Cpgi7272 15 77368239 to 77368483 244 CpG island CpG island 7272
Gm3787 15 77369494 to 77371010 1516 - lncRNA gene predicted gene 3787
Tssr131864 15 77370827 to 77370832 5 + TSS region transcription start site region 131864
Gm41354 15 77371212 to 77373878 2666 + lncRNA gene predicted gene, 41354
Tssr135098 15 77376910 to 77376919 9 - TSS region transcription start site region 135098
Gm41353 15 77377860 to 77379351 1491 + lncRNA gene predicted gene, 41353
Apol7a 15 77388219 to 77399110 10891 - protein coding gene apolipoprotein L 7a
Gm20688 15 77391702 to 77392381 679 - sense intronic lncRNA gene predicted gene 20688
Tssr135099 15 77399211 to 77399235 24 - TSS region transcription start site region 135099
Apol9a 15 77403789 to 77411080 7291 - protein coding gene apolipoprotein L 9a
Gm36194 15 77418553 to 77423599 5046 + lncRNA gene predicted gene, 36194
Apol7b 15 77422209 to 77447460 25251 - protein coding gene apolipoprotein L 7b
4930571N24Rik 15 77427979 to 77461968 33989 + unclassified gene RIKEN cDNA 4930571N24 gene
Gm6506 15 77443289 to 77444420 1131 - pseudogene predicted gene 6506
Gm8208 15 77444674 to 77445219 545 - pseudogene predicted gene 8208
Gm49551 15 77468202 to 77468459 257 + pseudogene predicted gene, 49551
Tssr131865 15 77477044 to 77477048 4 + TSS region transcription start site region 131865
Apol10a 15 77477047 to 77491069 14022 + protein coding gene apolipoprotein L 10A
Apol11a 15 77508129 to 77517874 9745 + protein coding gene apolipoprotein L 11a
Tssr131866 15 77508268 to 77508270 2 + TSS region transcription start site region 131866
Apol7c 15 77524852 to 77533316 8464 - protein coding gene apolipoprotein L 7c
Tssr135100 15 77533312 to 77533317 5 - TSS region transcription start site region 135100
1700025B11Rik 15 77558239 to 77561892 3653 - protein coding gene RIKEN cDNA 1700025B11 gene
Tssr135101 15 77561857 to 77561887 30 - TSS region transcription start site region 135101
Apol10b 15 77583819 to 77596125 12306 - protein coding gene apolipoprotein L 10B
Tssr135102 15 77584900 to 77584905 5 - TSS region transcription start site region 135102
Tssr135103 15 77596110 to 77596131 21 - TSS region transcription start site region 135103
Gm36245 15 77599258 to 77602854 3596 + lncRNA gene predicted gene, 36245
Tssr131867 15 77618965 to 77618970 5 + TSS region transcription start site region 131867
Gm8221 15 77621834 to 77626637 4803 + pseudogene predicted gene 8221
Apol11b 15 77633951 to 77643286 9335 - protein coding gene apolipoprotein L 11b
Apol10c-ps 15 77656048 to 77656836 788 - pseudogene apolipoprotein L 10C, pseudogene
Tssr135104 15 77659844 to 77659849 5 - TSS region transcription start site region 135104
Gm49407 15 77668493 to 77668736 243 - pseudogene predicted gene, 49407
Apol7e 15 77698857 to 77719285 20428 + protein coding gene apolipoprotein L 7e
Tssr131868 15 77698904 to 77698910 6 + TSS region transcription start site region 131868
Gm8233 15 77701124 to 77701675 551 + pseudogene predicted gene 8233
Gm18911 15 77702003 to 77703000 997 + pseudogene predicted gene, 18911
Gm36329 15 77717897 to 77723009 5112 - antisense lncRNA gene predicted gene, 36329
Apol9b 15 77729072 to 77736382 7310 + protein coding gene apolipoprotein L 9b
Tssr131869 15 77729091 to 77729096 5 + TSS region transcription start site region 131869
Tssr131870 15 77729152 to 77729172 20 + TSS region transcription start site region 131870
Tssr131871 15 77733610 to 77733654 44 + TSS region transcription start site region 131871
Tssr4644 15 77740751 to 77740769 18 + TSS region transcription start site region 4644
Gm49410 15 77740761 to 77743890 3129 + unclassified gene predicted gene, 49410
Apol8 15 77747798 to 77757003 9205 - protein coding gene apolipoprotein L 8
Tssr135105 15 77755218 to 77755265 47 - TSS region transcription start site region 135105
Tssr135106 15 77755266 to 77755281 15 - TSS region transcription start site region 135106
Myh9 15 77760587 to 77842175 81588 - protein coding gene myosin, heavy polypeptide 9, non-muscle
Tssr135107 15 77760786 to 77760802 16 - TSS region transcription start site region 135107
Tssr135108 15 77760867 to 77760950 83 - TSS region transcription start site region 135108
Tssr135109 15 77760951 to 77760963 12 - TSS region transcription start site region 135109
Tssr135110 15 77760990 to 77761013 23 - TSS region transcription start site region 135110
Tssr135111 15 77761078 to 77761111 33 - TSS region transcription start site region 135111
Tssr135112 15 77761767 to 77761783 16 - TSS region transcription start site region 135112
Tssr135113 15 77763831 to 77763843 12 - TSS region transcription start site region 135113
Cpgi7273 15 77764329 to 77764638 309 CpG island CpG island 7273
Tssr135114 15 77765766 to 77765780 14 - TSS region transcription start site region 135114
Tssr135115 15 77766829 to 77766861 32 - TSS region transcription start site region 135115
Tssr135116 15 77767567 to 77767593 26 - TSS region transcription start site region 135116
Tssr135117 15 77767643 to 77767656 13 - TSS region transcription start site region 135117
Tssr135118 15 77769873 to 77769892 19 - TSS region transcription start site region 135118
Tssr135119 15 77771174 to 77771191 17 - TSS region transcription start site region 135119
Tssr135120 15 77771210 to 77771227 17 - TSS region transcription start site region 135120
Tssr135121 15 77771854 to 77771867 13 - TSS region transcription start site region 135121
Tssr135122 15 77773395 to 77773418 23 - TSS region transcription start site region 135122
Tssr131872 15 77775206 to 77775209 3 + TSS region transcription start site region 131872
Tssr135123 15 77775209 to 77775224 15 - TSS region transcription start site region 135123
Tssr135124 15 77775926 to 77775943 17 - TSS region transcription start site region 135124
Tssr131873 15 77800757 to 77800791 34 + TSS region transcription start site region 131873
Tssr131874 15 77800815 to 77800826 11 + TSS region transcription start site region 131874
Tssr131875 15 77805943 to 77805954 11 + TSS region transcription start site region 131875
Tssr135125 15 77813151 to 77813167 16 - TSS region transcription start site region 135125
Tssr135126 15 77813203 to 77813237 34 - TSS region transcription start site region 135126
Tssr135127 15 77815916 to 77815927 11 - TSS region transcription start site region 135127
Tssr131876 15 77816354 to 77816401 47 + TSS region transcription start site region 131876
Tssr131877 15 77822473 to 77822482 9 + TSS region transcription start site region 131877
Tssr135128 15 77829455 to 77829458 3 - TSS region transcription start site region 135128
Tssr135129 15 77829604 to 77829608 4 - TSS region transcription start site region 135129
9530001J02Rik 15 77835088 to 77836852 1764 unclassified gene RIKEN cDNA 9530001J02 gene
Tssr135130 15 77836161 to 77836174 13 - TSS region transcription start site region 135130
Tssr135131 15 77836241 to 77836268 27 - TSS region transcription start site region 135131
Tssr135132 15 77836288 to 77836316 28 - TSS region transcription start site region 135132
Tssr135133 15 77836831 to 77836832 1 - TSS region transcription start site region 135133
Tssr135134 15 77838572 to 77838576 4 - TSS region transcription start site region 135134
Tssr131878 15 77840271 to 77840276 5 + TSS region transcription start site region 131878
Tssr4645 15 77840614 to 77840646 32 - TSS region transcription start site region 4645
Gm22107 15 77840657 to 77840756 99 - snRNA gene predicted gene, 22107
Cpgi7274 15 77841068 to 77842726 1658 CpG island CpG island 7274
Tssr135135 15 77842047 to 77842058 11 - TSS region transcription start site region 135135
Tssr135136 15 77842088 to 77842123 35 - TSS region transcription start site region 135136
Tssr135137 15 77842133 to 77842154 21 - TSS region transcription start site region 135137
Tssr135138 15 77849561 to 77849601 40 - TSS region transcription start site region 135138
Tssr131879 15 77849778 to 77849819 41 + TSS region transcription start site region 131879
Tssr131880 15 77855543 to 77855592 49 + TSS region transcription start site region 131880
Cpgi7275 15 77857663 to 77858106 443 CpG island CpG island 7275
Tssr135139 15 77857752 to 77857765 13 - TSS region transcription start site region 135139
Tssr131881 15 77857922 to 77857940 18 + TSS region transcription start site region 131881
Tssr135140 15 77874941 to 77874967 26 - TSS region transcription start site region 135140
Tssr131882 15 77881969 to 77882008 39 + TSS region transcription start site region 131882
Cpgi7276 15 77905307 to 77905622 315 CpG island CpG island 7276
Tssr135141 15 77905382 to 77905399 17 - TSS region transcription start site region 135141
Tssr131883 15 77905554 to 77905596 42 + TSS region transcription start site region 131883
Tssr131884 15 77905621 to 77905634 13 + TSS region transcription start site region 131884
Tssr131885 15 77906034 to 77906041 7 + TSS region transcription start site region 131885
Tssr131886 15 77911330 to 77911341 11 + TSS region transcription start site region 131886
Txn2 15 77915051 to 77928994 13943 - protein coding gene thioredoxin 2
Tssr135142 15 77915368 to 77915413 45 - TSS region transcription start site region 135142
Tssr135143 15 77915436 to 77915454 18 - TSS region transcription start site region 135143
Tssr135144 15 77915632 to 77915651 19 - TSS region transcription start site region 135144
Tssr135145 15 77915675 to 77915697 22 - TSS region transcription start site region 135145
Tssr135146 15 77915721 to 77915739 18 - TSS region transcription start site region 135146
Tssr135147 15 77927863 to 77927895 32 - TSS region transcription start site region 135147
Cpgi7277 15 77928611 to 77929212 601 CpG island CpG island 7277
Tssr135148 15 77928697 to 77928717 20 - TSS region transcription start site region 135148
Tssr135149 15 77928925 to 77929011 86 - TSS region transcription start site region 135149
Tssr131887 15 77929229 to 77929250 21 + TSS region transcription start site region 131887
Tssr4646 15 77933618 to 77933642 24 - TSS region transcription start site region 4646
Foxred2 15 77940522 to 77956722 16200 - protein coding gene FAD-dependent oxidoreductase domain containing 2
Tssr4647 15 77942122 to 77942126 4 - TSS region transcription start site region 4647
Tssr135150 15 77945717 to 77945733 16 - TSS region transcription start site region 135150
Tssr135151 15 77945765 to 77945780 15 - TSS region transcription start site region 135151
Tssr135152 15 77945790 to 77945800 10 - TSS region transcription start site region 135152
Tssr135153 15 77945872 to 77945894 22 - TSS region transcription start site region 135153
Cpgi7278 15 77955573 to 77956949 1376 CpG island CpG island 7278
Tssr135154 15 77956448 to 77956469 21 - TSS region transcription start site region 135154
Tssr135155 15 77956658 to 77956723 65 - TSS region transcription start site region 135155
Tssr131888 15 77956795 to 77956808 13 + TSS region transcription start site region 131888
Eif3d 15 77958998 to 77970813 11815 - protein coding gene eukaryotic translation initiation factor 3, subunit D
Gm17638 15 77961674 to 77967126 5452 + antisense lncRNA gene predicted gene, 17638
Tssr131889 15 77966673 to 77966696 23 + TSS region transcription start site region 131889
Tssr135156 15 77967592 to 77967599 7 - TSS region transcription start site region 135156
Tssr135157 15 77969768 to 77969774 6 - TSS region transcription start site region 135157
Cpgi7279 15 77970149 to 77971479 1330 CpG island CpG island 7279
Tssr135158 15 77970512 to 77970561 49 - TSS region transcription start site region 135158
Tssr135159 15 77970730 to 77970743 13 - TSS region transcription start site region 135159
Tssr135160 15 77970750 to 77970824 74 - TSS region transcription start site region 135160
Cacng2 15 77991919 to 78119474 127555 - protein coding gene calcium channel, voltage-dependent, gamma subunit 2
Tssr135161 15 77991982 to 77992006 24 - TSS region transcription start site region 135161
Tssr135162 15 77994898 to 77994904 6 - TSS region transcription start site region 135162
Cpgi7280 15 77995060 to 77995766 706 CpG island CpG island 7280
Tssr135163 15 77995069 to 77995085 16 - TSS region transcription start site region 135163
Tssr135164 15 77995090 to 77995107 17 - TSS region transcription start site region 135164
Gm46520 15 78012298 to 78054407 42109 + lncRNA gene predicted gene, 46520
Tssr131890 15 78044111 to 78044118 7 + TSS region transcription start site region 131890
Tssr131891 15 78044136 to 78044147 11 + TSS region transcription start site region 131891
Cpgi7281 15 78096328 to 78096482 154 CpG island CpG island 7281
Cpgi7282 15 78119225 to 78120296 1071 CpG island CpG island 7282
Tssr135165 15 78119580 to 78119624 44 - TSS region transcription start site region 135165
Tssr135166 15 78119629 to 78119652 23 - TSS region transcription start site region 135166
A730060N03Rik 15 78119706 to 78144142 24436 + antisense lncRNA gene RIKEN cDNA A730060N03 gene
Tssr135167 15 78119954 to 78120005 51 - TSS region transcription start site region 135167
Tssr135168 15 78120011 to 78120033 22 - TSS region transcription start site region 135168
Tssr135169 15 78120163 to 78120184 21 - TSS region transcription start site region 135169
Tssr135170 15 78120188 to 78120241 53 - TSS region transcription start site region 135170