Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:76311198-80811227

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1391 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq2 15 3460212 to 78717086 75256874 QTL subcutaneous fat pad weight QTL 2
Tailq6 15 3460212 to 78717086 75256874 QTL tail length QTL 6
Epfpq4 15 3460212 to 78717086 75256874 QTL epididymal fat percentage QTL 4
Tailaq4 15 3460212 to 78717086 75256874 QTL tail length adjusted QTL 4
W3q7 15 3460212 to 78717086 75256874 QTL weight 3 weeks QTL 7
Dpml 15 51141298 to 76910293 25768995 QTL dopamine loss
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Emo2 15 72500610 to 76910293 4409683 QTL emotionality 2
Oplah 15 76296601 to 76328015 31414 - protein coding gene 5-oxoprolinase (ATP-hydrolysing)
Cpgi7227 15 76327210 to 76327860 650 CpG island CpG island 7227
Exosc4 15 76327397 to 76330670 3273 + protein coding gene exosome component 4
Tssr131772 15 76327429 to 76327491 62 + TSS region transcription start site region 131772
Tssr131773 15 76328251 to 76328255 4 + TSS region transcription start site region 131773
Cpgi7228 15 76330838 to 76332354 1516 CpG island CpG island 7228
Tssr131774 15 76331244 to 76331255 11 + TSS region transcription start site region 131774
Tssr131775 15 76331288 to 76331361 73 + TSS region transcription start site region 131775
Gpaa1 15 76331294 to 76334900 3606 + protein coding gene GPI anchor attachment protein 1
Tssr131776 15 76331510 to 76331540 30 + TSS region transcription start site region 131776
Tssr131777 15 76337572 to 76337597 25 + TSS region transcription start site region 131777
Rps6-ps1 15 76337616 to 76338362 746 + pseudogene ribosomal protein S6, pseudogene 1
Cpgi7229 15 76343175 to 76344542 1367 CpG island CpG island 7229
Tssr131778 15 76343504 to 76343558 54 + TSS region transcription start site region 131778
Cyc1 15 76343523 to 76345934 2411 + protein coding gene cytochrome c-1
Tssr131779 15 76343572 to 76343583 11 + TSS region transcription start site region 131779
Tssr131780 15 76344380 to 76344395 15 + TSS region transcription start site region 131780
Tssr131781 15 76344431 to 76344452 21 + TSS region transcription start site region 131781
Sharpin 15 76347040 to 76351111 4071 - protein coding gene SHANK-associated RH domain interacting protein
Cpgi7230 15 76350112 to 76351946 1834 CpG island CpG island 7230
Tssr134981 15 76350191 to 76350239 48 - TSS region transcription start site region 134981
Tssr134982 15 76350496 to 76350526 30 - TSS region transcription start site region 134982
Tssr134983 15 76350646 to 76350657 11 - TSS region transcription start site region 134983
Tssr134984 15 76350674 to 76350745 71 - TSS region transcription start site region 134984
Tssr134985 15 76351008 to 76351131 123 - TSS region transcription start site region 134985
Tssr131782 15 76351288 to 76351299 11 + TSS region transcription start site region 131782
Maf1 15 76351294 to 76354378 3084 + protein coding gene MAF1 homolog, negative regulator of RNA polymerase III
Tssr131783 15 76351303 to 76351337 34 + TSS region transcription start site region 131783
Tssr131784 15 76351347 to 76351372 25 + TSS region transcription start site region 131784
Tssr131785 15 76354449 to 76354468 19 + TSS region transcription start site region 131785
Gm35339 15 76354449 to 76364941 10492 + protein coding gene predicted gene, 35339
Tssr131786 15 76354473 to 76354492 19 + TSS region transcription start site region 131786
Tssr131787 15 76354497 to 76354503 6 + TSS region transcription start site region 131787
Cpgi7231 15 76356417 to 76356841 424 CpG island CpG island 7231
Cpgi7232 15 76368529 to 76369817 1288 CpG island CpG island 7232
Tssr131788 15 76368884 to 76368936 52 + TSS region transcription start site region 131788
Hgh1 15 76368898 to 76371437 2539 + protein coding gene HGH1 homolog
Tssk5 15 76371952 to 76374938 2986 - protein coding gene testis-specific serine kinase 5
Tssr134986 15 76374915 to 76374925 10 - TSS region transcription start site region 134986
Tssr134987 15 76374926 to 76374942 16 - TSS region transcription start site region 134987
Cpgi7233 15 76380128 to 76381143 1015 CpG island CpG island 7233
Mroh1 15 76380467 to 76453039 72572 + protein coding gene maestro heat-like repeat family member 1
Tssr131789 15 76380468 to 76380479 11 + TSS region transcription start site region 131789
Tssr131790 15 76380492 to 76380542 50 + TSS region transcription start site region 131790
Mir6954 15 76433214 to 76433273 59 + miRNA gene microRNA 6954
Tssr131791 15 76441064 to 76441069 5 + TSS region transcription start site region 131791
Bop1 15 76452996 to 76477269 24273 - protein coding gene block of proliferation 1
Cpgi7234 15 76457081 to 76458406 1325 CpG island CpG island 7234
Tssr131792 15 76457446 to 76457464 18 + TSS region transcription start site region 131792
Scx 15 76457452 to 76459458 2006 + protein coding gene scleraxis
Cpgi7235 15 76476784 to 76478176 1392 CpG island CpG island 7235
Tssr134988 15 76477239 to 76477259 20 - TSS region transcription start site region 134988
Tssr134989 15 76477273 to 76477284 11 - TSS region transcription start site region 134989
Hsf1 15 76477367 to 76500982 23615 + protein coding gene heat shock factor 1
Tssr131793 15 76477404 to 76477461 57 + TSS region transcription start site region 131793
Dgat1 15 76502015 to 76511953 9938 - protein coding gene diacylglycerol O-acyltransferase 1
Tssr134990 15 76507721 to 76507725 4 - TSS region transcription start site region 134990
Tssr134991 15 76509649 to 76509683 34 - TSS region transcription start site region 134991
Tssr134992 15 76509705 to 76509723 18 - TSS region transcription start site region 134992
Cpgi7236 15 76511337 to 76512543 1206 CpG island CpG island 7236
Tssr134993 15 76511824 to 76511851 27 - TSS region transcription start site region 134993
Tssr134994 15 76511856 to 76511868 12 - TSS region transcription start site region 134994
Tssr134995 15 76511960 to 76511974 14 - TSS region transcription start site region 134995
Tssr134996 15 76511997 to 76512008 11 - TSS region transcription start site region 134996
Tssr134997 15 76512183 to 76512194 11 - TSS region transcription start site region 134997
Tssr134998 15 76512199 to 76512211 12 - TSS region transcription start site region 134998
Tssr134999 15 76512268 to 76512277 9 - TSS region transcription start site region 134999
Tssr131794 15 76512382 to 76512405 23 + TSS region transcription start site region 131794
Scrt1 15 76516203 to 76522129 5926 - protein coding gene scratch family zinc finger 1
Cpgi7237 15 76517613 to 76520136 2523 CpG island CpG island 7237
Tssr135000 15 76518357 to 76518381 24 - TSS region transcription start site region 135000
Tssr135001 15 76518547 to 76518552 5 - TSS region transcription start site region 135001
Tssr135002 15 76519863 to 76519891 28 - TSS region transcription start site region 135002
Tssr131795 15 76520904 to 76520919 15 + TSS region transcription start site region 131795
Tssr131796 15 76520927 to 76520937 10 + TSS region transcription start site region 131796
Cpgi7238 15 76521449 to 76523993 2544 CpG island CpG island 7238
Tssr135003 15 76522004 to 76522058 54 - TSS region transcription start site region 135003
Tssr135004 15 76522247 to 76522307 60 - TSS region transcription start site region 135004
Tssr135005 15 76522310 to 76522351 41 - TSS region transcription start site region 135005
Tssr135006 15 76522369 to 76522379 10 - TSS region transcription start site region 135006
Tssr135007 15 76522402 to 76522470 68 - TSS region transcription start site region 135007
Tssr135008 15 76522575 to 76522591 16 - TSS region transcription start site region 135008
Tssr135009 15 76522599 to 76522608 9 - TSS region transcription start site region 135009
Gm46533 15 76522618 to 76529155 6537 + lncRNA gene predicted gene, 46533
Tssr135010 15 76523236 to 76523248 12 - TSS region transcription start site region 135010
Tssr131797 15 76526449 to 76526452 3 + TSS region transcription start site region 131797
Gm49550 15 76526770 to 76527021 251 - pseudogene predicted gene, 49550
Tmem249 15 76533213 to 76535366 2153 - protein coding gene transmembrane protein 249
Tssr135011 15 76534938 to 76535010 72 - TSS region transcription start site region 135011
Fbxl6 15 76535723 to 76538746 3023 - protein coding gene F-box and leucine-rich repeat protein 6
Cpgi7239 15 76537777 to 76539193 1416 CpG island CpG island 7239
Tssr135012 15 76538702 to 76538721 19 - TSS region transcription start site region 135012
Tssr135013 15 76538728 to 76538773 45 - TSS region transcription start site region 135013
Tssr131798 15 76538812 to 76538876 64 + TSS region transcription start site region 131798
Slc52a2 15 76538832 to 76544608 5776 + protein coding gene solute carrier protein 52, member 2
Tssr131799 15 76538877 to 76538903 26 + TSS region transcription start site region 131799
Tssr131800 15 76538934 to 76538961 27 + TSS region transcription start site region 131800
Tssr131801 15 76538967 to 76539002 35 + TSS region transcription start site region 131801
Tssr131802 15 76539038 to 76539057 19 + TSS region transcription start site region 131802
Gm35739 15 76557435 to 76559860 2425 + lncRNA gene predicted gene, 35739
Cpgi7240 15 76576173 to 76576753 580 CpG island CpG island 7240
Gm10869 15 76576181 to 76576892 711 protein coding gene predicted gene 10869
Tssr131803 15 76576352 to 76576380 28 + TSS region transcription start site region 131803
Adck5 15 76576359 to 76595812 19453 + protein coding gene aarF domain containing kinase 5
Tssr131804 15 76576386 to 76576457 71 + TSS region transcription start site region 131804
Tssr135014 15 76576748 to 76576752 4 - TSS region transcription start site region 135014
Tssr135015 15 76576807 to 76576814 7 - TSS region transcription start site region 135015
Gm49413 15 76577825 to 76580863 3038 + unclassified gene predicted gene, 49413
Tssr135016 15 76583969 to 76583978 9 - TSS region transcription start site region 135016
5730521K06Rik 15 76590120 to 76591727 1607 + unclassified gene RIKEN cDNA 5730521K06 gene
Cpsf1 15 76595808 to 76607591 11783 - protein coding gene cleavage and polyadenylation specific factor 1
Cpgi7241 15 76607054 to 76607945 891 CpG island CpG island 7241
Tssr135017 15 76607484 to 76607542 58 - TSS region transcription start site region 135017
Tssr135018 15 76607568 to 76607593 25 - TSS region transcription start site region 135018
Slc39a4 15 76612383 to 76617379 4996 - protein coding gene solute carrier family 39 (zinc transporter), member 4
Cpgi7242 15 76612554 to 76613443 889 CpG island CpG island 7242
Tssr135019 15 76612700 to 76612715 15 - TSS region transcription start site region 135019
Tssr135020 15 76612923 to 76612962 39 - TSS region transcription start site region 135020
Tssr135021 15 76612965 to 76612972 7 - TSS region transcription start site region 135021
Tssr135022 15 76614217 to 76614251 34 - TSS region transcription start site region 135022
Tssr135023 15 76614357 to 76614367 10 - TSS region transcription start site region 135023
Tssr135024 15 76615041 to 76615055 14 - TSS region transcription start site region 135024
Tssr135025 15 76615912 to 76615960 48 - TSS region transcription start site region 135025
Tssr135026 15 76616458 to 76616479 21 - TSS region transcription start site region 135026
Tssr131805 15 76616646 to 76616651 5 + TSS region transcription start site region 131805
Tssr135027 15 76616825 to 76616837 12 - TSS region transcription start site region 135027
Tssr135028 15 76616841 to 76616876 35 - TSS region transcription start site region 135028
Tssr135029 15 76617115 to 76617126 11 - TSS region transcription start site region 135029
Tssr135030 15 76617129 to 76617146 17 - TSS region transcription start site region 135030
Tssr135031 15 76617325 to 76617374 49 - TSS region transcription start site region 135031
Vps28 15 76622086 to 76626084 3998 - protein coding gene vacuolar protein sorting 28
Cpgi7243 15 76625606 to 76626297 691 CpG island CpG island 7243
Tssr135032 15 76626007 to 76626089 82 - TSS region transcription start site region 135032
Tssr131806 15 76626189 to 76626208 19 + TSS region transcription start site region 131806
Tssr131807 15 76626213 to 76626226 13 + TSS region transcription start site region 131807
Tonsl 15 76626237 to 76639929 13692 - protein coding gene tonsoku-like, DNA repair protein
Cpgi7244 15 76639410 to 76640086 676 CpG island CpG island 7244
Tssr135033 15 76639795 to 76639798 3 - TSS region transcription start site region 135033
Tssr135034 15 76639898 to 76639952 54 - TSS region transcription start site region 135034
Cyhr1 15 76643395 to 76660117 16722 - protein coding gene cysteine and histidine rich 1
Cpgi7245 15 76656131 to 76657418 1287 CpG island CpG island 7245
Tssr135035 15 76656735 to 76656747 12 - TSS region transcription start site region 135035
Tssr135036 15 76656750 to 76656769 19 - TSS region transcription start site region 135036
Tssr135037 15 76656905 to 76656934 29 - TSS region transcription start site region 135037
Cpgi7246 15 76659599 to 76661422 1823 CpG island CpG island 7246
Tssr135038 15 76659658 to 76659681 23 - TSS region transcription start site region 135038
Tssr135039 15 76659691 to 76659743 52 - TSS region transcription start site region 135039
Tssr131808 15 76659849 to 76659903 54 + TSS region transcription start site region 131808
Kifc2 15 76659858 to 76668196 8338 + protein coding gene kinesin family member C2
Tssr135040 15 76660087 to 76660098 11 - TSS region transcription start site region 135040
Tssr135041 15 76660111 to 76660142 31 - TSS region transcription start site region 135041
Tssr131809 15 76660328 to 76660361 33 + TSS region transcription start site region 131809
Tssr131810 15 76660564 to 76660610 46 + TSS region transcription start site region 131810
Tssr131811 15 76667479 to 76667496 17 + TSS region transcription start site region 131811
Tssr131812 15 76667689 to 76667700 11 + TSS region transcription start site region 131812
Foxh1 15 76668225 to 76669948 1723 - protein coding gene forkhead box H1
Cpgi7247 15 76668996 to 76669221 225 CpG island CpG island 7247
Tssr135042 15 76669669 to 76669681 12 - TSS region transcription start site region 135042
Tssr135043 15 76669799 to 76669804 5 - TSS region transcription start site region 135043
Tssr135044 15 76669811 to 76669820 9 - TSS region transcription start site region 135044
Tssr135045 15 76669832 to 76669851 19 - TSS region transcription start site region 135045
Tssr135046 15 76669865 to 76669890 25 - TSS region transcription start site region 135046
Cpgi7248 15 76671478 to 76672041 563 CpG island CpG island 7248
Ppp1r16a 15 76671620 to 76694919 23299 + protein coding gene protein phosphatase 1, regulatory subunit 16A
Tssr131813 15 76671626 to 76671710 84 + TSS region transcription start site region 131813
Tssr4643 15 76671713 to 76671731 18 + TSS region transcription start site region 4643
Tssr131814 15 76690558 to 76690579 21 + TSS region transcription start site region 131814
Tssr131815 15 76690584 to 76690610 26 + TSS region transcription start site region 131815
Tssr131816 15 76691238 to 76691258 20 + TSS region transcription start site region 131816
Tssr131817 15 76695685 to 76695702 17 + TSS region transcription start site region 131817
Tssr131818 15 76695765 to 76695787 22 + TSS region transcription start site region 131818
Tssr135047 15 76695975 to 76695979 4 - TSS region transcription start site region 135047
Tssr131819 15 76696725 to 76696747 22 + TSS region transcription start site region 131819
Gpt 15 76696726 to 76699675 2949 + protein coding gene glutamic pyruvic transaminase, soluble
Cpgi7249 15 76697604 to 76698847 1243 CpG island CpG island 7249
Tssr135048 15 76697961 to 76697992 31 - TSS region transcription start site region 135048
Tssr135049 15 76698015 to 76698025 10 - TSS region transcription start site region 135049
Tssr131820 15 76698172 to 76698221 49 + TSS region transcription start site region 131820
Cpgi7250 15 76701324 to 76701982 658 CpG island CpG island 7250
Tssr131821 15 76701455 to 76701496 41 + TSS region transcription start site region 131821
Tssr131822 15 76701526 to 76701574 48 + TSS region transcription start site region 131822
Mfsd3 15 76701542 to 76704239 2697 + protein coding gene major facilitator superfamily domain containing 3
Recql4 15 76703553 to 76710548 6995 - protein coding gene RecQ protein-like 4
Cpgi7251 15 76709936 to 76711341 1405 CpG island CpG island 7251
Tssr135050 15 76710486 to 76710511 25 - TSS region transcription start site region 135050
Tssr135051 15 76710523 to 76710556 33 - TSS region transcription start site region 135051
Tssr131823 15 76710610 to 76710665 55 + TSS region transcription start site region 131823
Lrrc14 15 76710641 to 76715130 4489 + protein coding gene leucine rich repeat containing 14
Tssr131824 15 76712277 to 76712281 4 + TSS region transcription start site region 131824
Cpgi7252 15 76715230 to 76716236 1006 CpG island CpG island 7252
Lrrc24 15 76715276 to 76722173 6897 - protein coding gene leucine rich repeat containing 24
Cpgi7253 15 76718135 to 76718857 722 CpG island CpG island 7253