Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:76281064-76601069

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spatc1 15 76268089 to 76292572 24483 + protein coding gene spermatogenesis and centriole associated 1
Cpgi7223 15 76284584 to 76285015 431 CpG island CpG island 7223
Tssr134974 15 76287750 to 76287771 21 - TSS region transcription start site region 134974
Mir3079 15 76290879 to 76290968 89 - miRNA gene microRNA 3079
Cpgi7224 15 76292216 to 76292533 317 CpG island CpG island 7224
Cpgi7225 15 76294301 to 76295423 1122 CpG island CpG island 7225
Tssr131764 15 76294343 to 76294355 12 + TSS region transcription start site region 131764
Smpd5 15 76294348 to 76296896 2548 + protein coding gene sphingomyelin phosphodiesterase 5
Tssr131765 15 76294357 to 76294380 23 + TSS region transcription start site region 131765
Tssr131766 15 76294391 to 76294409 18 + TSS region transcription start site region 131766
Tssr134975 15 76294722 to 76294754 32 - TSS region transcription start site region 134975
Tssr131767 15 76294788 to 76294821 33 + TSS region transcription start site region 131767
Tssr131768 15 76294825 to 76294856 31 + TSS region transcription start site region 131768
Tssr131769 15 76295228 to 76295292 64 + TSS region transcription start site region 131769
Tssr131770 15 76295304 to 76295310 6 + TSS region transcription start site region 131770
Oplah 15 76296601 to 76328015 31414 - protein coding gene 5-oxoprolinase (ATP-hydrolysing)
Tssr134976 15 76306694 to 76306705 11 - TSS region transcription start site region 134976
Cpgi7226 15 76307138 to 76307537 399 CpG island CpG island 7226
Tssr134977 15 76307217 to 76307230 13 - TSS region transcription start site region 134977
Tssr134978 15 76307231 to 76307296 65 - TSS region transcription start site region 134978
Tssr134979 15 76309766 to 76309783 17 - TSS region transcription start site region 134979
Tssr134980 15 76309792 to 76309799 7 - TSS region transcription start site region 134980
Tssr131771 15 76309866 to 76309877 11 + TSS region transcription start site region 131771
Cpgi7227 15 76327210 to 76327860 650 CpG island CpG island 7227
Exosc4 15 76327397 to 76330670 3273 + protein coding gene exosome component 4
Tssr131772 15 76327429 to 76327491 62 + TSS region transcription start site region 131772
Tssr131773 15 76328251 to 76328255 4 + TSS region transcription start site region 131773
Cpgi7228 15 76330838 to 76332354 1516 CpG island CpG island 7228
Tssr131774 15 76331244 to 76331255 11 + TSS region transcription start site region 131774
Tssr131775 15 76331288 to 76331361 73 + TSS region transcription start site region 131775
Gpaa1 15 76331294 to 76334900 3606 + protein coding gene GPI anchor attachment protein 1
Tssr131776 15 76331510 to 76331540 30 + TSS region transcription start site region 131776
Tssr131777 15 76337572 to 76337597 25 + TSS region transcription start site region 131777
Rps6-ps1 15 76337616 to 76338362 746 + pseudogene ribosomal protein S6, pseudogene 1
Cpgi7229 15 76343175 to 76344542 1367 CpG island CpG island 7229
Tssr131778 15 76343504 to 76343558 54 + TSS region transcription start site region 131778
Cyc1 15 76343523 to 76345934 2411 + protein coding gene cytochrome c-1
Tssr131779 15 76343572 to 76343583 11 + TSS region transcription start site region 131779
Tssr131780 15 76344380 to 76344395 15 + TSS region transcription start site region 131780
Tssr131781 15 76344431 to 76344452 21 + TSS region transcription start site region 131781
Sharpin 15 76347040 to 76351111 4071 - protein coding gene SHANK-associated RH domain interacting protein
Cpgi7230 15 76350112 to 76351946 1834 CpG island CpG island 7230
Tssr134981 15 76350191 to 76350239 48 - TSS region transcription start site region 134981
Tssr134982 15 76350496 to 76350526 30 - TSS region transcription start site region 134982
Tssr134983 15 76350646 to 76350657 11 - TSS region transcription start site region 134983
Tssr134984 15 76350674 to 76350745 71 - TSS region transcription start site region 134984
Tssr134985 15 76351008 to 76351131 123 - TSS region transcription start site region 134985
Tssr131782 15 76351288 to 76351299 11 + TSS region transcription start site region 131782
Maf1 15 76351294 to 76354378 3084 + protein coding gene MAF1 homolog, negative regulator of RNA polymerase III
Tssr131783 15 76351303 to 76351337 34 + TSS region transcription start site region 131783
Tssr131784 15 76351347 to 76351372 25 + TSS region transcription start site region 131784
Tssr131785 15 76354449 to 76354468 19 + TSS region transcription start site region 131785
Gm35339 15 76354449 to 76364941 10492 + protein coding gene predicted gene, 35339
Tssr131786 15 76354473 to 76354492 19 + TSS region transcription start site region 131786
Tssr131787 15 76354497 to 76354503 6 + TSS region transcription start site region 131787
Cpgi7231 15 76356417 to 76356841 424 CpG island CpG island 7231
Cpgi7232 15 76368529 to 76369817 1288 CpG island CpG island 7232
Tssr131788 15 76368884 to 76368936 52 + TSS region transcription start site region 131788
Hgh1 15 76368898 to 76371437 2539 + protein coding gene HGH1 homolog
Tssk5 15 76371952 to 76374938 2986 - protein coding gene testis-specific serine kinase 5
Tssr134986 15 76374915 to 76374925 10 - TSS region transcription start site region 134986
Tssr134987 15 76374926 to 76374942 16 - TSS region transcription start site region 134987
Cpgi7233 15 76380128 to 76381143 1015 CpG island CpG island 7233
Mroh1 15 76380467 to 76453039 72572 + protein coding gene maestro heat-like repeat family member 1
Tssr131789 15 76380468 to 76380479 11 + TSS region transcription start site region 131789
Tssr131790 15 76380492 to 76380542 50 + TSS region transcription start site region 131790
Mir6954 15 76433214 to 76433273 59 + miRNA gene microRNA 6954
Tssr131791 15 76441064 to 76441069 5 + TSS region transcription start site region 131791
Bop1 15 76452996 to 76477269 24273 - protein coding gene block of proliferation 1
Cpgi7234 15 76457081 to 76458406 1325 CpG island CpG island 7234
Tssr131792 15 76457446 to 76457464 18 + TSS region transcription start site region 131792
Scx 15 76457452 to 76459458 2006 + protein coding gene scleraxis
Cpgi7235 15 76476784 to 76478176 1392 CpG island CpG island 7235
Tssr134988 15 76477239 to 76477259 20 - TSS region transcription start site region 134988
Tssr134989 15 76477273 to 76477284 11 - TSS region transcription start site region 134989
Hsf1 15 76477367 to 76500982 23615 + protein coding gene heat shock factor 1
Tssr131793 15 76477404 to 76477461 57 + TSS region transcription start site region 131793
Dgat1 15 76502015 to 76511953 9938 - protein coding gene diacylglycerol O-acyltransferase 1
Tssr134990 15 76507721 to 76507725 4 - TSS region transcription start site region 134990
Tssr134991 15 76509649 to 76509683 34 - TSS region transcription start site region 134991
Tssr134992 15 76509705 to 76509723 18 - TSS region transcription start site region 134992
Cpgi7236 15 76511337 to 76512543 1206 CpG island CpG island 7236
Tssr134993 15 76511824 to 76511851 27 - TSS region transcription start site region 134993
Tssr134994 15 76511856 to 76511868 12 - TSS region transcription start site region 134994
Tssr134995 15 76511960 to 76511974 14 - TSS region transcription start site region 134995
Tssr134996 15 76511997 to 76512008 11 - TSS region transcription start site region 134996
Tssr134997 15 76512183 to 76512194 11 - TSS region transcription start site region 134997
Tssr134998 15 76512199 to 76512211 12 - TSS region transcription start site region 134998
Tssr134999 15 76512268 to 76512277 9 - TSS region transcription start site region 134999
Tssr131794 15 76512382 to 76512405 23 + TSS region transcription start site region 131794
Scrt1 15 76516203 to 76522129 5926 - protein coding gene scratch family zinc finger 1
Cpgi7237 15 76517613 to 76520136 2523 CpG island CpG island 7237
Tssr135000 15 76518357 to 76518381 24 - TSS region transcription start site region 135000
Tssr135001 15 76518547 to 76518552 5 - TSS region transcription start site region 135001
Tssr135002 15 76519863 to 76519891 28 - TSS region transcription start site region 135002
Tssr131795 15 76520904 to 76520919 15 + TSS region transcription start site region 131795
Tssr131796 15 76520927 to 76520937 10 + TSS region transcription start site region 131796
Cpgi7238 15 76521449 to 76523993 2544 CpG island CpG island 7238
Tssr135003 15 76522004 to 76522058 54 - TSS region transcription start site region 135003
Tssr135004 15 76522247 to 76522307 60 - TSS region transcription start site region 135004
Tssr135005 15 76522310 to 76522351 41 - TSS region transcription start site region 135005
Tssr135006 15 76522369 to 76522379 10 - TSS region transcription start site region 135006
Tssr135007 15 76522402 to 76522470 68 - TSS region transcription start site region 135007
Tssr135008 15 76522575 to 76522591 16 - TSS region transcription start site region 135008
Tssr135009 15 76522599 to 76522608 9 - TSS region transcription start site region 135009
Gm46533 15 76522618 to 76529155 6537 + lncRNA gene predicted gene, 46533
Tssr135010 15 76523236 to 76523248 12 - TSS region transcription start site region 135010
Tssr131797 15 76526449 to 76526452 3 + TSS region transcription start site region 131797
Gm49550 15 76526770 to 76527021 251 - pseudogene predicted gene, 49550
Tmem249 15 76533213 to 76535366 2153 - protein coding gene transmembrane protein 249
Tssr135011 15 76534938 to 76535010 72 - TSS region transcription start site region 135011
Fbxl6 15 76535723 to 76538746 3023 - protein coding gene F-box and leucine-rich repeat protein 6
Cpgi7239 15 76537777 to 76539193 1416 CpG island CpG island 7239
Tssr135012 15 76538702 to 76538721 19 - TSS region transcription start site region 135012
Tssr135013 15 76538728 to 76538773 45 - TSS region transcription start site region 135013
Tssr131798 15 76538812 to 76538876 64 + TSS region transcription start site region 131798
Slc52a2 15 76538832 to 76544608 5776 + protein coding gene solute carrier protein 52, member 2
Tssr131799 15 76538877 to 76538903 26 + TSS region transcription start site region 131799
Tssr131800 15 76538934 to 76538961 27 + TSS region transcription start site region 131800
Tssr131801 15 76538967 to 76539002 35 + TSS region transcription start site region 131801
Tssr131802 15 76539038 to 76539057 19 + TSS region transcription start site region 131802
Gm35739 15 76557435 to 76559860 2425 + lncRNA gene predicted gene, 35739
Cpgi7240 15 76576173 to 76576753 580 CpG island CpG island 7240
Gm10869 15 76576181 to 76576892 711 protein coding gene predicted gene 10869
Tssr131803 15 76576352 to 76576380 28 + TSS region transcription start site region 131803
Adck5 15 76576359 to 76595812 19453 + protein coding gene aarF domain containing kinase 5
Tssr131804 15 76576386 to 76576457 71 + TSS region transcription start site region 131804
Tssr135014 15 76576748 to 76576752 4 - TSS region transcription start site region 135014
Tssr135015 15 76576807 to 76576814 7 - TSS region transcription start site region 135015
Gm49413 15 76577825 to 76580863 3038 + unclassified gene predicted gene, 49413
Tssr135016 15 76583969 to 76583978 9 - TSS region transcription start site region 135016
5730521K06Rik 15 76590120 to 76591727 1607 + unclassified gene RIKEN cDNA 5730521K06 gene
Cpsf1 15 76595808 to 76607591 11783 - protein coding gene cleavage and polyadenylation specific factor 1