Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:72377387-75037414

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462 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfnq3 15 40313626 to 72500731 32187105 QTL lung function QTL 3
Hwtf1 15 71800000 to 73000000 1200000 QTL heart weight by femur 1
Gm24390 15 72490958 to 72491019 61 - snRNA gene predicted gene, 24390
Emo2 15 72500610 to 76910293 4409683 QTL emotionality 2
D15Mit105 15 72500610 to 72500731 121 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 105
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Kcnk9 15 72501089 to 72546340 45251 - protein coding gene potassium channel, subfamily K, member 9
A930009L07Rik 15 72506988 to 72509257 2269 unclassified non-coding RNA gene RIKEN cDNA A930009L07 gene
Cpgi7151 15 72512126 to 72512586 460 CpG island CpG island 7151
D15Mit93 15 72539670 to 72539813 143 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 93
Cpgi7152 15 72545815 to 72548092 2277 CpG island CpG island 7152
Tssr134650 15 72547637 to 72547644 7 - TSS region transcription start site region 134650
Tssr134651 15 72547688 to 72547707 19 - TSS region transcription start site region 134651
Cpgi7153 15 72549399 to 72549645 246 CpG island CpG island 7153
Gm49460 15 72588283 to 72606053 17770 + antisense lncRNA gene predicted gene, 49460
Trappc9 15 72589620 to 73061204 471584 - protein coding gene trafficking protein particle complex 9
Cpgi7154 15 72668493 to 72668758 265 CpG island CpG island 7154
Gm28020 15 72721321 to 72721387 66 - snRNA gene predicted gene, 28020
Gm49459 15 72725404 to 72725860 456 + pseudogene predicted gene, 49459
3100002H20Rik 15 72785715 to 72787085 1370 unclassified gene RIKEN cDNA 3100002H20 gene
Peg13 15 72805604 to 72810324 4720 - sense intronic lncRNA gene paternally expressed 13
Tssr134652 15 72806225 to 72806245 20 - TSS region transcription start site region 134652
Tssr134653 15 72806425 to 72806446 21 - TSS region transcription start site region 134653
Tssr134654 15 72806714 to 72806726 12 - TSS region transcription start site region 134654
Cpgi7155 15 72809377 to 72810812 1435 CpG island CpG island 7155
Tssr134655 15 72809928 to 72809939 11 - TSS region transcription start site region 134655
Tssr134656 15 72809945 to 72809960 15 - TSS region transcription start site region 134656
Tssr134657 15 72809965 to 72810013 48 - TSS region transcription start site region 134657
Tssr134658 15 72810026 to 72810037 11 - TSS region transcription start site region 134658
Tssr134659 15 72810296 to 72810332 36 - TSS region transcription start site region 134659
Tssr4617 15 72814418 to 72814435 17 + TSS region transcription start site region 4617
D15Mit169 15 72816943 to 72817073 130 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 169
Tssr134660 15 72820012 to 72820018 6 - TSS region transcription start site region 134660
Gm41343 15 72845973 to 72848834 2861 + lncRNA gene predicted gene, 41343
Tssr4618 15 72848881 to 72848882 1 + TSS region transcription start site region 4618
Gm3150 15 72913357 to 72913560 203 + pseudogene predicted gene 3150
Tssr134661 15 72921420 to 72921452 32 - TSS region transcription start site region 134661
Tssr134662 15 72925602 to 72925611 9 - TSS region transcription start site region 134662
Tssr134663 15 72925627 to 72925636 9 - TSS region transcription start site region 134663
Tssr134664 15 72925711 to 72925723 12 - TSS region transcription start site region 134664
Tssr134665 15 72930189 to 72930216 27 - TSS region transcription start site region 134665
Gm31665 15 72969876 to 72975798 5922 + lncRNA gene predicted gene, 31665
Tssr131513 15 72972077 to 72972094 17 + TSS region transcription start site region 131513
Tssr4619 15 73021593 to 73021605 12 + TSS region transcription start site region 4619
Tssr134666 15 73030822 to 73030829 7 - TSS region transcription start site region 134666
Tssr134667 15 73038625 to 73038636 11 - TSS region transcription start site region 134667
Tssr134668 15 73038638 to 73038658 20 - TSS region transcription start site region 134668
Tssr134669 15 73038790 to 73038815 25 - TSS region transcription start site region 134669
Tssr134670 15 73040766 to 73040773 7 - TSS region transcription start site region 134670
Tssr134671 15 73052237 to 73052245 8 - TSS region transcription start site region 134671
Cpgi7156 15 73058046 to 73058544 498 CpG island CpG island 7156
Tssr134672 15 73060213 to 73060259 46 - TSS region transcription start site region 134672
Cpgi7157 15 73060405 to 73061314 909 CpG island CpG island 7157
Tssr134673 15 73061004 to 73061096 92 - TSS region transcription start site region 134673
Tssr134674 15 73061223 to 73061234 11 - TSS region transcription start site region 134674
Cpgi7158 15 73067385 to 73067975 590 CpG island CpG island 7158
Cpgi7159 15 73090031 to 73091218 1187 CpG island CpG island 7159
Tssr131514 15 73090392 to 73090441 49 + TSS region transcription start site region 131514
Chrac1 15 73090412 to 73094075 3663 + protein coding gene chromatin accessibility complex 1
Tssr131515 15 73090847 to 73090886 39 + TSS region transcription start site region 131515
Tssr131516 15 73091452 to 73091457 5 + TSS region transcription start site region 131516
Tssr134675 15 73096922 to 73096937 15 - TSS region transcription start site region 134675
Ago2 15 73101625 to 73184947 83322 - protein coding gene argonaute RISC catalytic subunit 2
Tssr134676 15 73102879 to 73102881 2 - TSS region transcription start site region 134676
Gm31725 15 73108884 to 73113618 4734 + lncRNA gene predicted gene, 31725
D15Mit197 15 73117593 to 73117703 110 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 197
Tssr134677 15 73140169 to 73140179 10 - TSS region transcription start site region 134677
Cpgi7160 15 73140294 to 73140564 270 CpG island CpG island 7160
Tssr134678 15 73147861 to 73147879 18 - TSS region transcription start site region 134678
Tssr131517 15 73148142 to 73148185 43 + TSS region transcription start site region 131517
Tssr4620 15 73148552 to 73148565 13 - TSS region transcription start site region 4620
Tssr131518 15 73149022 to 73149030 8 + TSS region transcription start site region 131518
Tssr131519 15 73149835 to 73149884 49 + TSS region transcription start site region 131519
Tssr131520 15 73153498 to 73153526 28 + TSS region transcription start site region 131520
Tssr134679 15 73154631 to 73154643 12 - TSS region transcription start site region 134679
Tssr131521 15 73155571 to 73155578 7 + TSS region transcription start site region 131521
Tssr131522 15 73155585 to 73155590 5 + TSS region transcription start site region 131522
Tssr131523 15 73155596 to 73155606 10 + TSS region transcription start site region 131523
Tssr134680 15 73156557 to 73156604 47 - TSS region transcription start site region 134680
Tssr134681 15 73157204 to 73157227 23 - TSS region transcription start site region 134681
Tssr134682 15 73162029 to 73162047 18 - TSS region transcription start site region 134682
Tssr134683 15 73162227 to 73162233 6 - TSS region transcription start site region 134683
Tssr131524 15 73162395 to 73162404 9 + TSS region transcription start site region 131524
Tssr131525 15 73176138 to 73176142 4 + TSS region transcription start site region 131525
Tssr131526 15 73176183 to 73176218 35 + TSS region transcription start site region 131526
Tssr131527 15 73182662 to 73182671 9 + TSS region transcription start site region 131527
Cpgi7161 15 73183784 to 73185744 1960 CpG island CpG island 7161
Tssr134684 15 73184863 to 73184971 108 - TSS region transcription start site region 134684
Tssr134685 15 73185245 to 73185256 11 - TSS region transcription start site region 134685
Tssr134686 15 73185270 to 73185283 13 - TSS region transcription start site region 134686
Tssr134687 15 73185302 to 73185317 15 - TSS region transcription start site region 134687
Tssr134688 15 73185321 to 73185351 30 - TSS region transcription start site region 134688
Ptk2 15 73205102 to 73423275 218173 - protein coding gene PTK2 protein tyrosine kinase 2
8030476L19Rik 15 73227003 to 73228095 1092 unclassified gene RIKEN cDNA 8030476L19 gene
Tssr134689 15 73243006 to 73243037 31 - TSS region transcription start site region 134689
1700085D07Rik 15 73249546 to 73264120 14574 + antisense lncRNA gene RIKEN cDNA 1700085D07 gene
Mir151 15 73254815 to 73254882 67 - miRNA gene microRNA 151
Tssr134690 15 73268367 to 73268370 3 - TSS region transcription start site region 134690
Tssr134691 15 73268491 to 73268528 37 - TSS region transcription start site region 134691
Tssr134692 15 73284761 to 73284771 10 - TSS region transcription start site region 134692
Tssr134693 15 73296670 to 73296692 22 - TSS region transcription start site region 134693
Tssr134694 15 73296711 to 73296724 13 - TSS region transcription start site region 134694
Tssr134695 15 73311064 to 73311066 2 - TSS region transcription start site region 134695
Gm41344 15 73318363 to 73325120 6757 + lncRNA gene predicted gene, 41344
Gm24787 15 73349799 to 73349921 122 + snoRNA gene predicted gene, 24787
Tssr134696 15 73360435 to 73360451 16 - TSS region transcription start site region 134696
Tssr134697 15 73363783 to 73363788 5 - TSS region transcription start site region 134697
C130079B09Rik 15 73400762 to 73403173 2411 unclassified gene RIKEN cDNA C130079B09 gene
Gm7908 15 73407492 to 73408238 746 - pseudogene predicted gene 7908
Cpgi7162 15 73422510 to 73423848 1338 CpG island CpG island 7162
Tssr134698 15 73423035 to 73423055 20 - TSS region transcription start site region 134698
Tssr134699 15 73423077 to 73423179 102 - TSS region transcription start site region 134699
Tssr134700 15 73423180 to 73423218 38 - TSS region transcription start site region 134700
Tssr134701 15 73423226 to 73423239 13 - TSS region transcription start site region 134701
Tssr131528 15 73423281 to 73423326 45 + TSS region transcription start site region 131528
Gm49066 15 73423311 to 73424109 798 + bidirectional promoter lncRNA gene predicted gene, 49066
Gm10362 15 73428359 to 73428910 551 - pseudogene predicted gene 10362
Tssr134702 15 73487268 to 73487278 10 - TSS region transcription start site region 134702
Tssr134703 15 73487308 to 73487318 10 - TSS region transcription start site region 134703
Tssr134704 15 73487323 to 73487333 10 - TSS region transcription start site region 134704
Tssr134705 15 73487335 to 73487342 7 - TSS region transcription start site region 134705
Tssr4621 15 73487822 to 73487831 9 + TSS region transcription start site region 4621
Tssr131529 15 73487834 to 73487860 26 + TSS region transcription start site region 131529
Tssr4622 15 73487884 to 73487894 10 + TSS region transcription start site region 4622
Gm19811 15 73497038 to 73497297 259 - pseudogene predicted gene, 19811
Cpgi7163 15 73512222 to 73513213 991 CpG island CpG island 7163
Tssr131530 15 73512559 to 73512607 48 + TSS region transcription start site region 131530
Dennd3 15 73512560 to 73572242 59682 + protein coding gene DENN/MADD domain containing 3
Tssr131531 15 73512614 to 73512640 26 + TSS region transcription start site region 131531
Tssr131532 15 73512644 to 73512690 46 + TSS region transcription start site region 131532
Tssr131533 15 73512693 to 73512705 12 + TSS region transcription start site region 131533
Tssr131534 15 73518567 to 73518615 48 + TSS region transcription start site region 131534
Tssr131535 15 73558391 to 73558395 4 + TSS region transcription start site region 131535
Slc45a4 15 73577424 to 73645762 68338 - protein coding gene solute carrier family 45, member 4
Tssr134706 15 73622046 to 73622050 4 - TSS region transcription start site region 134706
Tssr134707 15 73643255 to 73643260 5 - TSS region transcription start site region 134707
Cpgi7164 15 73644783 to 73646331 1548 CpG island CpG island 7164
Tssr134708 15 73645665 to 73645750 85 - TSS region transcription start site region 134708
1700010B13Rik 15 73645852 to 73652347 6495 + unclassified non-coding RNA gene RIKEN cDNA 1700010B13 gene
Tssr134709 15 73676443 to 73676461 18 - TSS region transcription start site region 134709
Tssr131536 15 73676661 to 73676675 14 + TSS region transcription start site region 131536
Tssr134710 15 73677338 to 73677355 17 - TSS region transcription start site region 134710
Gpr20 15 73694604 to 73707505 12901 - protein coding gene G protein-coupled receptor 20
Tssr134711 15 73707387 to 73707414 27 - TSS region transcription start site region 134711
Tssr131537 15 73723124 to 73723129 5 + TSS region transcription start site region 131537
Tssr131538 15 73723131 to 73723151 20 + TSS region transcription start site region 131538
Ptp4a3 15 73723145 to 73758766 35621 + protein coding gene protein tyrosine phosphatase 4a3
Tssr4623 15 73723156 to 73723159 3 + TSS region transcription start site region 4623
Tssr131539 15 73723164 to 73723174 10 + TSS region transcription start site region 131539
Cpgi7165 15 73724206 to 73725550 1344 CpG island CpG island 7165
Tssr131540 15 73724754 to 73724826 72 + TSS region transcription start site region 131540
Tssr131541 15 73727690 to 73727714 24 + TSS region transcription start site region 131541
Tssr131542 15 73729148 to 73729167 19 + TSS region transcription start site region 131542
Gm22106 15 73729164 to 73729290 126 + snRNA gene predicted gene, 22106
Tssr134712 15 73735071 to 73735127 56 - TSS region transcription start site region 134712
Tssr131543 15 73742856 to 73742859 3 + TSS region transcription start site region 131543
Cpgi7166 15 73747700 to 73748920 1220 CpG island CpG island 7166
Tssr131544 15 73748365 to 73748384 19 + TSS region transcription start site region 131544
Tssr131545 15 73748416 to 73748418 2 + TSS region transcription start site region 131545
Tssr131546 15 73749582 to 73749596 14 + TSS region transcription start site region 131546
Tssr131547 15 73750778 to 73750783 5 + TSS region transcription start site region 131547
Tssr131548 15 73751309 to 73751325 16 + TSS region transcription start site region 131548
Tssr131549 15 73751393 to 73751402 9 + TSS region transcription start site region 131549
Tssr4624 15 73751415 to 73751439 24 + TSS region transcription start site region 4624
Tssr134713 15 73751971 to 73752009 38 - TSS region transcription start site region 134713
Tssr134714 15 73761075 to 73761090 15 - TSS region transcription start site region 134714
Tssr131550 15 73761420 to 73761428 8 + TSS region transcription start site region 131550
Tssr134715 15 73765735 to 73765739 4 - TSS region transcription start site region 134715
Mroh5 15 73786936 to 73839671 52735 - protein coding gene maestro heat-like repeat family member 5
Ndufb4c 15 73809507 to 73809896 389 - pseudogene NADH:ubiquinone oxidoreductase subunit B4C
Tssr131551 15 73830073 to 73830095 22 + TSS region transcription start site region 131551
Tssr134716 15 73830978 to 73830988 10 - TSS region transcription start site region 134716
Tssr134717 15 73830995 to 73831003 8 - TSS region transcription start site region 134717
Tssr134718 15 73831008 to 73831024 16 - TSS region transcription start site region 134718
Gm6569 15 73834561 to 73839908 5347 + protein coding gene predicted gene 6569
Tssr131552 15 73836130 to 73836138 8 + TSS region transcription start site region 131552
Tssr131553 15 73836139 to 73836163 24 + TSS region transcription start site region 131553
Cpgi7167 15 73838839 to 73840485 1646 CpG island CpG island 7167
D15Mit237 15 73880362 to 73880480 118 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 237
Tssr131554 15 73920014 to 73920018 4 + TSS region transcription start site region 131554
Tssr131555 15 73957121 to 73957158 37 + TSS region transcription start site region 131555
Tssr134719 15 73986112 to 73986153 41 - TSS region transcription start site region 134719
D15Mit235 15 73986731 to 73986853 122 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 235
Gm32355 15 73990025 to 73994048 4023 + lncRNA gene predicted gene, 32355
Gm32405 15 73994102 to 74000010 5908 - lincRNA gene predicted gene, 32405
Tssr131556 15 74044160 to 74044162 2 + TSS region transcription start site region 131556
Gm7935 15 74080234 to 74081511 1277 - pseudogene predicted pseudogene 7935
Gm15387 15 74093686 to 74094333 647 - pseudogene predicted gene 15387
D15Mit1002 15 74180895 to 74181069 174 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1002
D15Mit1001 15 74181102 to 74181208 106 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1001
Gm32918 15 74195213 to 74204449 9236 - lncRNA gene predicted gene, 32918
D15Mit279 15 74219017 to 74219123 106 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-279
Gm19859 15 74234588 to 74399215 164627 - lncRNA gene predicted gene, 19859
Pfat4 15 74245156 to 74245304 148 QTL predicted fat percentage 4
Ses3 15 74245156 to 74245304 148 QTL salmonella enteritidis susceptibility 3
D15Mit29 15 74245156 to 74245304 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 29
7120482A17Rik 15 74268889 to 74270040 1151 unclassified gene RIKEN cDNA 7120482A17 gene
Gm41345 15 74280642 to 74285397 4755 - lncRNA gene predicted gene, 41345
Gm32839 15 74285568 to 74293815 8247 + lncRNA gene predicted gene, 32839
Gm32168 15 74411114 to 74481140 70026 - protein coding gene predicted gene, 32168