Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:66689278-69829282

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tg 15 66670754 to 66850721 179967 + protein coding gene thyroglobulin
Lcho4 15 66670754 to 66850721 179967 QTL liver cholesterol 4
Tssr131476 15 66700956 to 66700961 5 + TSS region transcription start site region 131476
Tssr134568 15 66702583 to 66702612 29 - TSS region transcription start site region 134568
Tssr134569 15 66702664 to 66702686 22 - TSS region transcription start site region 134569
Gm17140 15 66739059 to 66744327 5268 - antisense lncRNA gene predicted gene 17140
D15Mit211 15 66754868 to 66754992 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 211
Sla 15 66780819 to 66831829 51010 - protein coding gene src-like adaptor
Tssr4614 15 66782880 to 66782882 2 - TSS region transcription start site region 4614
Tssr134570 15 66783070 to 66783108 38 - TSS region transcription start site region 134570
Tssr134571 15 66792787 to 66792800 13 - TSS region transcription start site region 134571
Tssr134572 15 66792857 to 66792858 1 - TSS region transcription start site region 134572
Tssr131477 15 66798697 to 66798706 9 + TSS region transcription start site region 131477
Tssr131478 15 66798732 to 66798742 10 + TSS region transcription start site region 131478
Tssr131479 15 66798744 to 66798751 7 + TSS region transcription start site region 131479
Tssr134573 15 66801542 to 66801567 25 - TSS region transcription start site region 134573
Tssr134574 15 66801577 to 66801599 22 - TSS region transcription start site region 134574
Tssr134575 15 66801605 to 66801620 15 - TSS region transcription start site region 134575
Tssr134576 15 66801621 to 66801637 16 - TSS region transcription start site region 134576
Tssr131480 15 66801666 to 66801670 4 + TSS region transcription start site region 131480
Tssr134577 15 66801674 to 66801693 19 - TSS region transcription start site region 134577
Tssr134578 15 66803844 to 66803857 13 - TSS region transcription start site region 134578
Tssr131481 15 66803979 to 66804001 22 + TSS region transcription start site region 131481
Tssr134579 15 66804018 to 66804034 16 - TSS region transcription start site region 134579
Tssr134580 15 66804043 to 66804054 11 - TSS region transcription start site region 134580
Tssr134581 15 66804060 to 66804069 9 - TSS region transcription start site region 134581
Tssr134582 15 66804078 to 66804093 15 - TSS region transcription start site region 134582
Tssr131482 15 66804157 to 66804205 48 + TSS region transcription start site region 131482
Tssr131483 15 66807506 to 66807528 22 + TSS region transcription start site region 131483
Tssr134583 15 66810140 to 66810143 3 - TSS region transcription start site region 134583
Tssr134584 15 66810613 to 66810627 14 - TSS region transcription start site region 134584
Tssr134585 15 66812058 to 66812103 45 - TSS region transcription start site region 134585
Tssr134586 15 66812112 to 66812135 23 - TSS region transcription start site region 134586
Tssr134587 15 66812187 to 66812214 27 - TSS region transcription start site region 134587
Tssr131484 15 66812234 to 66812244 10 + TSS region transcription start site region 131484
Tssr131485 15 66812360 to 66812378 18 + TSS region transcription start site region 131485
Tssr134588 15 66812637 to 66812649 12 - TSS region transcription start site region 134588
Tssr134589 15 66812659 to 66812680 21 - TSS region transcription start site region 134589
Tssr134590 15 66812685 to 66812710 25 - TSS region transcription start site region 134590
Tssr134591 15 66812716 to 66812732 16 - TSS region transcription start site region 134591
Tssr134592 15 66813197 to 66813226 29 - TSS region transcription start site region 134592
Tssr134593 15 66831625 to 66831668 43 - TSS region transcription start site region 134593
D15Mit106 15 66843674 to 66843764 90 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 106
Tssr134594 15 66865197 to 66865207 10 - TSS region transcription start site region 134594
Tssr131486 15 66868800 to 66868805 5 + TSS region transcription start site region 131486
Gm46514 15 66876880 to 66891331 14451 - lncRNA gene predicted gene, 46514
Ccn4 15 66891325 to 66923205 31880 + protein coding gene cellular communication network factor 4
Tssr131487 15 66891363 to 66891375 12 + TSS region transcription start site region 131487
Tssr131488 15 66891378 to 66891389 11 + TSS region transcription start site region 131488
Cpgi7143 15 66891391 to 66891572 181 CpG island CpG island 7143
Tssr131489 15 66891414 to 66891430 16 + TSS region transcription start site region 131489
Tssr131490 15 66891457 to 66891468 11 + TSS region transcription start site region 131490
Tssr131491 15 66891477 to 66891495 18 + TSS region transcription start site region 131491
Tssr131492 15 66891539 to 66891546 7 + TSS region transcription start site region 131492
Tssr131493 15 66909255 to 66909272 17 + TSS region transcription start site region 131493
Tssr131494 15 66909289 to 66909300 11 + TSS region transcription start site region 131494
Ndrg1 15 66929318 to 66969640 40322 - protein coding gene N-myc downstream regulated gene 1
Gm17035 15 66929607 to 66931107 1500 + antisense lncRNA gene predicted gene 17035
Tssr134595 15 66935115 to 66935123 8 - TSS region transcription start site region 134595
Tssr134596 15 66940216 to 66940229 13 - TSS region transcription start site region 134596
Tssr134597 15 66943113 to 66943136 23 - TSS region transcription start site region 134597
Tssr134598 15 66944025 to 66944063 38 - TSS region transcription start site region 134598
Tssr134599 15 66948419 to 66948427 8 - TSS region transcription start site region 134599
Tssr134600 15 66949050 to 66949068 18 - TSS region transcription start site region 134600
Tssr134601 15 66949228 to 66949234 6 - TSS region transcription start site region 134601
Cpgi7144 15 66968530 to 66970456 1926 CpG island CpG island 7144
Tssr134602 15 66969632 to 66969647 15 - TSS region transcription start site region 134602
Gm2895 15 66969780 to 67012703 42923 + bidirectional promoter lncRNA gene predicted gene 2895
Tssr134603 15 66969938 to 66969953 15 - TSS region transcription start site region 134603
Tssr134604 15 66978407 to 66978408 1 - TSS region transcription start site region 134604
Gm31286 15 67020386 to 67033257 12871 + lncRNA gene predicted gene, 31286
Gm31342 15 67040058 to 67040824 766 + lincRNA gene predicted gene, 31342
Tssr134605 15 67083065 to 67083072 7 - TSS region transcription start site region 134605
Tssr134606 15 67102023 to 67102041 18 - TSS region transcription start site region 134606
St3gal1 15 67102875 to 67176830 73955 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Tssr134607 15 67104954 to 67104964 10 - TSS region transcription start site region 134607
Tssr134608 15 67105063 to 67105085 22 - TSS region transcription start site region 134608
Tssr134609 15 67105136 to 67105178 42 - TSS region transcription start site region 134609
Tssr4615 15 67107395 to 67107396 1 + TSS region transcription start site region 4615
Tssr134610 15 67113909 to 67113946 37 - TSS region transcription start site region 134610
Tssr134611 15 67114888 to 67114909 21 - TSS region transcription start site region 134611
Tssr134612 15 67115176 to 67115193 17 - TSS region transcription start site region 134612
Tssr134613 15 67128852 to 67128874 22 - TSS region transcription start site region 134613
Tssr134614 15 67128895 to 67128896 1 - TSS region transcription start site region 134614
Tssr134615 15 67128920 to 67128929 9 - TSS region transcription start site region 134615
Tssr134616 15 67128952 to 67128963 11 - TSS region transcription start site region 134616
Tssr134617 15 67128987 to 67129005 18 - TSS region transcription start site region 134617
Tssr134618 15 67129013 to 67129027 14 - TSS region transcription start site region 134618
Tssr134619 15 67131562 to 67131568 6 - TSS region transcription start site region 134619
Tssr134620 15 67146453 to 67146497 44 - TSS region transcription start site region 134620
Gm31400 15 67169705 to 67171881 2176 + lncRNA gene predicted gene, 31400
Cpgi7145 15 67174889 to 67177581 2692 CpG island CpG island 7145
Tssr134621 15 67176718 to 67176735 17 - TSS region transcription start site region 134621
Tssr134622 15 67176747 to 67176791 44 - TSS region transcription start site region 134622
Tssr134623 15 67176800 to 67176807 7 - TSS region transcription start site region 134623
Tssr134624 15 67176824 to 67176841 17 - TSS region transcription start site region 134624
Tssr131495 15 67176990 to 67177055 65 + TSS region transcription start site region 131495
1700012I11Rik 15 67226769 to 67377094 150325 + lincRNA gene RIKEN cDNA 1700012I11 gene
D15Mit123 15 67294616 to 67294756 140 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 123
Tssr131496 15 67336505 to 67336506 1 + TSS region transcription start site region 131496
Tssr131497 15 67873781 to 67873786 5 + TSS region transcription start site region 131497
Gm49408 15 67873828 to 67874067 239 + pseudogene predicted gene, 49408
Tssr134625 15 67903088 to 67903116 28 - TSS region transcription start site region 134625
Gm49409 15 67942552 to 67942804 252 - pseudogene predicted gene, 49409
D15Mit257 15 67978673 to 67978795 122 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 257
Tssr131498 15 67996653 to 67996655 2 + TSS region transcription start site region 131498
D15Mit213 15 68081542 to 68081666 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 213
Zfat 15 68083764 to 68258856 175092 - protein coding gene zinc finger and AT hook domain containing
Tssr134626 15 68252708 to 68252717 9 - TSS region transcription start site region 134626
Cpgi7146 15 68258006 to 68259250 1244 CpG island CpG island 7146
Tssr131499 15 68258274 to 68258320 46 + TSS region transcription start site region 131499
Tssr131500 15 68258591 to 68258604 13 + TSS region transcription start site region 131500
Tssr134627 15 68258834 to 68258880 46 - TSS region transcription start site region 134627
Tssr131501 15 68259278 to 68259282 4 + TSS region transcription start site region 131501
Hbtq 15 68288859 to 68288984 125 QTL habituation QTL
D15Mit144 15 68288859 to 68288984 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 144
Tssr131502 15 68309776 to 68309784 8 + TSS region transcription start site region 131502
Gm10240 15 68309819 to 68310301 482 + pseudogene predicted gene 10240
Gm37320 15 68321381 to 68326333 4952 - unclassified gene predicted gene, 37320
Gm26621 15 68334715 to 68337430 2715 - unclassified non-coding RNA gene predicted gene, 26621
Mirc26 15 68337415 to 68341289 3874 complex/cluster/region microRNA cluster 26, including Mir30b through Mir30d
Mir30b 15 68337415 to 68337510 95 - miRNA gene microRNA 30b
Tssr134628 15 68337427 to 68337432 5 - TSS region transcription start site region 134628
Gm37296 15 68338295 to 68341216 2921 - unclassified gene predicted gene, 37296
Tssr134629 15 68340475 to 68340488 13 - TSS region transcription start site region 134629
Gm20732 15 68340983 to 68363176 22193 - lincRNA gene predicted gene 20732
Mir30d 15 68341208 to 68341289 81 - miRNA gene microRNA 30d
Tssr134630 15 68341210 to 68341215 5 - TSS region transcription start site region 134630
Tssr134631 15 68362090 to 68362104 14 - TSS region transcription start site region 134631
Cpgi7147 15 68362096 to 68363733 1637 CpG island CpG island 7147
Tssr134632 15 68363139 to 68363160 21 - TSS region transcription start site region 134632
Tssr134633 15 68363200 to 68363228 28 - TSS region transcription start site region 134633
Tssr134634 15 68393043 to 68393066 23 - TSS region transcription start site region 134634
Tssr131503 15 68395327 to 68395338 11 + TSS region transcription start site region 131503
Tssr134635 15 68401607 to 68401624 17 - TSS region transcription start site region 134635
D15Mit185 15 68402207 to 68402324 117 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 185
Tssr131504 15 68403753 to 68403755 2 + TSS region transcription start site region 131504
D15Mit66 15 68546512 to 68546662 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 66
Heal27 15 68546512 to 68546662 150 QTL wound healing/regeneration 29
Gm49414 15 68611410 to 68611707 297 - pseudogene predicted gene, 49414
Gm25987 15 68671416 to 68671522 106 + snRNA gene predicted gene, 25987
D15Mit212 15 68680304 to 68680390 86 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 212
Gm7859 15 68715009 to 68715763 754 - pseudogene predicted gene 7859
Gm49415 15 68755500 to 68760811 5311 + lincRNA gene predicted gene, 49415
Gm18930 15 68762491 to 68764253 1762 + pseudogene predicted gene, 18930
D15Mit277 15 68773490 to 68773777 287 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-277
Pain2 15 68773490 to 68773777 287 QTL pain 2
Szs13 15 68813983 to 68822600 8617 QTL seizure susceptibility 13
Gm7125 15 68876693 to 68877786 1093 + pseudogene predicted pseudogene 7125
Gm41341 15 68878315 to 68883576 5261 + lncRNA gene predicted gene, 41341
Cpgi7148 15 68927791 to 68929536 1745 CpG island CpG island 7148
Tssr131505 15 68928380 to 68928393 13 + TSS region transcription start site region 131505
Tssr131506 15 68928395 to 68928409 14 + TSS region transcription start site region 131506
Tssr131507 15 68928414 to 68928421 7 + TSS region transcription start site region 131507
Khdrbs3 15 68928420 to 69101211 172791 + protein coding gene KH domain containing, RNA binding, signal transduction associated 3
Tssr131508 15 68928423 to 68928452 29 + TSS region transcription start site region 131508
Tssr131509 15 68928462 to 68928483 21 + TSS region transcription start site region 131509
Tssr131510 15 68928703 to 68928729 26 + TSS region transcription start site region 131510
Tssr131511 15 68929359 to 68929376 17 + TSS region transcription start site region 131511
D15Mit3 15 68934666 to 68934802 136 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 3
Cocrb14 15 68934666 to 68934802 136 QTL cocaine related behavior 14
Gm49422 15 68959531 to 68994444 34913 + sense intronic lncRNA gene predicted gene, 49422
Gm31550 15 69022087 to 69024020 1933 + lncRNA gene predicted gene, 31550
Tssr131512 15 69041007 to 69041010 3 + TSS region transcription start site region 131512
D15Mit90 15 69138786 to 69138900 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 90
4930573C08Rik 15 69233931 to 69234999 1068 - unclassified non-coding RNA gene RIKEN cDNA 4930573C08 gene
Tssr134636 15 69234991 to 69234999 8 - TSS region transcription start site region 134636
4930504C09Rik 15 69270533 to 69274718 4185 + lincRNA gene RIKEN cDNA 4930504C09 gene
n-TMcat3 15 69396623 to 69396694 71 - tRNA gene nuclear encoded tRNA methionine 3 (anticodon CAT)
D15Dcr2 15 69412986 to 69413081 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 2
Gm24232 15 69451015 to 69451146 131 - snoRNA gene predicted gene, 24232
D15Mit89 15 69490424 to 69490623 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 89
Gm23987 15 69685578 to 69685706 128 - snoRNA gene predicted gene, 23987