Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:65771917-66805243

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41339 15 65778741 to 65786963 8222 - lncRNA gene predicted gene, 41339
Cpgi7140 15 65786681 to 65787783 1102 CpG island CpG island 7140
Tssr134552 15 65786982 to 65786993 11 - TSS region transcription start site region 134552
Tssr131458 15 65787023 to 65787090 67 + TSS region transcription start site region 131458
Efr3a 15 65787034 to 65873816 86782 + protein coding gene EFR3 homolog A
Tssr131459 15 65787100 to 65787117 17 + TSS region transcription start site region 131459
Gm41338 15 65787253 to 65793156 5903 + lncRNA gene predicted gene, 41338
Tssr131460 15 65805005 to 65805012 7 + TSS region transcription start site region 131460
Tssr131461 15 65810179 to 65810186 7 + TSS region transcription start site region 131461
Tssr131462 15 65810217 to 65810228 11 + TSS region transcription start site region 131462
Gm20405 15 65857869 to 65858356 487 + unclassified non-coding RNA gene predicted gene 20405
Tssr131463 15 65865663 to 65865698 35 + TSS region transcription start site region 131463
Oc90 15 65876053 to 65912397 36344 - protein coding gene otoconin 90
Tssr134553 15 65912285 to 65912292 7 - TSS region transcription start site region 134553
Tssr134554 15 65912347 to 65912357 10 - TSS region transcription start site region 134554
Tssr134555 15 65912419 to 65912437 18 - TSS region transcription start site region 134555
Hhla1 15 65922443 to 65976804 54361 - protein coding gene HERV-H LTR-associating 1
Tssr131464 15 65926814 to 65926821 7 + TSS region transcription start site region 131464
Gm2991 15 65928454 to 65928933 479 - pseudogene predicted pseudogene 2991
Tssr4613 15 65947346 to 65947347 1 + TSS region transcription start site region 4613
Tssr134556 15 65976800 to 65976805 5 - TSS region transcription start site region 134556
Kcnq3 15 65986390 to 66286636 300246 - protein coding gene potassium voltage-gated channel, subfamily Q, member 3
Tssr134557 15 65993084 to 65993092 8 - TSS region transcription start site region 134557
Gm27153 15 66074552 to 66091807 17255 + antisense lncRNA gene predicted gene 27153
Tssr134558 15 66135457 to 66135459 2 - TSS region transcription start site region 134558
Tssr131465 15 66152702 to 66152709 7 + TSS region transcription start site region 131465
D15Mit233 15 66247272 to 66247376 104 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 233
Cpgi7141 15 66285603 to 66287307 1704 CpG island CpG island 7141
Tssr134559 15 66286596 to 66286661 65 - TSS region transcription start site region 134559
Tssr134560 15 66286765 to 66286802 37 - TSS region transcription start site region 134560
Tssr134561 15 66286803 to 66286821 18 - TSS region transcription start site region 134561
Gm27242 15 66286917 to 66290243 3326 + lincRNA gene predicted gene 27242
Gm30929 15 66335133 to 66340714 5581 - lincRNA gene predicted gene, 30929
Gm41340 15 66354228 to 66357518 3290 + lncRNA gene predicted gene, 41340
Gm19077 15 66357519 to 66358391 872 - pseudogene predicted gene, 19077
Lrrc6 15 66379858 to 66500910 121052 - protein coding gene leucine rich repeat containing 6 (testis)
Tssr131466 15 66445559 to 66445597 38 + TSS region transcription start site region 131466
Tssr134562 15 66453842 to 66453846 4 - TSS region transcription start site region 134562
Tssr134563 15 66500857 to 66500905 48 - TSS region transcription start site region 134563
Gm31006 15 66500908 to 66507723 6815 + lncRNA gene predicted gene, 31006
Tmem71 15 66526212 to 66561103 34891 - protein coding gene transmembrane protein 71
Tssr131467 15 66541587 to 66541608 21 + TSS region transcription start site region 131467
Tssr134564 15 66560936 to 66560984 48 - TSS region transcription start site region 134564
Tssr134565 15 66560997 to 66561067 70 - TSS region transcription start site region 134565
Tssr134566 15 66561070 to 66561081 11 - TSS region transcription start site region 134566
Tssr134567 15 66561089 to 66561100 11 - TSS region transcription start site region 134567
D15Mit101 15 66570909 to 66571106 197 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 101
Cpgi7142 15 66577282 to 66578206 924 CpG island CpG island 7142
Phf20l1 15 66577519 to 66647043 69524 + protein coding gene PHD finger protein 20-like 1
Tssr131468 15 66577522 to 66577533 11 + TSS region transcription start site region 131468
Tssr131469 15 66577536 to 66577637 101 + TSS region transcription start site region 131469
Tssr131470 15 66579182 to 66579185 3 + TSS region transcription start site region 131470
Tssr131471 15 66604080 to 66604091 11 + TSS region transcription start site region 131471
Tssr131472 15 66615717 to 66615734 17 + TSS region transcription start site region 131472
Tssr131473 15 66615763 to 66615799 36 + TSS region transcription start site region 131473
Tssr131474 15 66642899 to 66642924 25 + TSS region transcription start site region 131474
D15Ertd509e 15 66646789 to 66647019 230 DNA segment DNA segment, Chr 15, ERATO Doi 509, expressed
Tssr131475 15 66670749 to 66670754 5 + TSS region transcription start site region 131475
Tg 15 66670754 to 66850721 179967 + protein coding gene thyroglobulin
Lcho4 15 66670754 to 66850721 179967 QTL liver cholesterol 4
Tssr131476 15 66700956 to 66700961 5 + TSS region transcription start site region 131476
Tssr134568 15 66702583 to 66702612 29 - TSS region transcription start site region 134568
Tssr134569 15 66702664 to 66702686 22 - TSS region transcription start site region 134569
Gm17140 15 66739059 to 66744327 5268 - antisense lncRNA gene predicted gene 17140
D15Mit211 15 66754868 to 66754992 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 211
Sla 15 66780819 to 66831829 51010 - protein coding gene src-like adaptor
Tssr4614 15 66782880 to 66782882 2 - TSS region transcription start site region 4614
Tssr134570 15 66783070 to 66783108 38 - TSS region transcription start site region 134570
Tssr134571 15 66792787 to 66792800 13 - TSS region transcription start site region 134571
Tssr134572 15 66792857 to 66792858 1 - TSS region transcription start site region 134572
Tssr131477 15 66798697 to 66798706 9 + TSS region transcription start site region 131477
Tssr131478 15 66798732 to 66798742 10 + TSS region transcription start site region 131478
Tssr131479 15 66798744 to 66798751 7 + TSS region transcription start site region 131479
Tssr134573 15 66801542 to 66801567 25 - TSS region transcription start site region 134573
Tssr134574 15 66801577 to 66801599 22 - TSS region transcription start site region 134574
Tssr134575 15 66801605 to 66801620 15 - TSS region transcription start site region 134575
Tssr134576 15 66801621 to 66801637 16 - TSS region transcription start site region 134576
Tssr131480 15 66801666 to 66801670 4 + TSS region transcription start site region 131480
Tssr134577 15 66801674 to 66801693 19 - TSS region transcription start site region 134577
Tssr134578 15 66803844 to 66803857 13 - TSS region transcription start site region 134578
Tssr131481 15 66803979 to 66804001 22 + TSS region transcription start site region 131481
Tssr134579 15 66804018 to 66804034 16 - TSS region transcription start site region 134579
Tssr134580 15 66804043 to 66804054 11 - TSS region transcription start site region 134580
Tssr134581 15 66804060 to 66804069 9 - TSS region transcription start site region 134581
Tssr134582 15 66804078 to 66804093 15 - TSS region transcription start site region 134582
Tssr131482 15 66804157 to 66804205 48 + TSS region transcription start site region 131482