Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:65585457-66685459

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D15Mit62 15 65593513 to 65593647 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 62
Pcir3 15 65593513 to 65593647 134 QTL periosteal circumference 3
Gm49243 15 65687828 to 65688148 320 - pseudogene predicted gene, 49243
Gm23907 15 65694549 to 65694737 188 + snRNA gene predicted gene, 23907
Gm41339 15 65778741 to 65786963 8222 - lncRNA gene predicted gene, 41339
Cpgi7140 15 65786681 to 65787783 1102 CpG island CpG island 7140
Tssr134552 15 65786982 to 65786993 11 - TSS region transcription start site region 134552
Tssr131458 15 65787023 to 65787090 67 + TSS region transcription start site region 131458
Efr3a 15 65787034 to 65873816 86782 + protein coding gene EFR3 homolog A
Tssr131459 15 65787100 to 65787117 17 + TSS region transcription start site region 131459
Gm41338 15 65787253 to 65793156 5903 + lncRNA gene predicted gene, 41338
Tssr131460 15 65805005 to 65805012 7 + TSS region transcription start site region 131460
Tssr131461 15 65810179 to 65810186 7 + TSS region transcription start site region 131461
Tssr131462 15 65810217 to 65810228 11 + TSS region transcription start site region 131462
Gm20405 15 65857869 to 65858356 487 + unclassified non-coding RNA gene predicted gene 20405
Tssr131463 15 65865663 to 65865698 35 + TSS region transcription start site region 131463
Oc90 15 65876053 to 65912397 36344 - protein coding gene otoconin 90
Tssr134553 15 65912285 to 65912292 7 - TSS region transcription start site region 134553
Tssr134554 15 65912347 to 65912357 10 - TSS region transcription start site region 134554
Tssr134555 15 65912419 to 65912437 18 - TSS region transcription start site region 134555
Hhla1 15 65922443 to 65976804 54361 - protein coding gene HERV-H LTR-associating 1
Tssr131464 15 65926814 to 65926821 7 + TSS region transcription start site region 131464
Gm2991 15 65928454 to 65928933 479 - pseudogene predicted pseudogene 2991
Tssr4613 15 65947346 to 65947347 1 + TSS region transcription start site region 4613
Tssr134556 15 65976800 to 65976805 5 - TSS region transcription start site region 134556
Kcnq3 15 65986390 to 66286636 300246 - protein coding gene potassium voltage-gated channel, subfamily Q, member 3
Tssr134557 15 65993084 to 65993092 8 - TSS region transcription start site region 134557
Gm27153 15 66074552 to 66091807 17255 + antisense lncRNA gene predicted gene 27153
Tssr134558 15 66135457 to 66135459 2 - TSS region transcription start site region 134558
Tssr131465 15 66152702 to 66152709 7 + TSS region transcription start site region 131465
D15Mit233 15 66247272 to 66247376 104 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 233
Cpgi7141 15 66285603 to 66287307 1704 CpG island CpG island 7141
Tssr134559 15 66286596 to 66286661 65 - TSS region transcription start site region 134559
Tssr134560 15 66286765 to 66286802 37 - TSS region transcription start site region 134560
Tssr134561 15 66286803 to 66286821 18 - TSS region transcription start site region 134561
Gm27242 15 66286917 to 66290243 3326 + lincRNA gene predicted gene 27242
Gm30929 15 66335133 to 66340714 5581 - lincRNA gene predicted gene, 30929
Gm41340 15 66354228 to 66357518 3290 + lncRNA gene predicted gene, 41340
Gm19077 15 66357519 to 66358391 872 - pseudogene predicted gene, 19077
Lrrc6 15 66379858 to 66500910 121052 - protein coding gene leucine rich repeat containing 6 (testis)
Tssr131466 15 66445559 to 66445597 38 + TSS region transcription start site region 131466
Tssr134562 15 66453842 to 66453846 4 - TSS region transcription start site region 134562
Tssr134563 15 66500857 to 66500905 48 - TSS region transcription start site region 134563
Gm31006 15 66500908 to 66507723 6815 + lncRNA gene predicted gene, 31006
Tmem71 15 66526212 to 66561103 34891 - protein coding gene transmembrane protein 71
Tssr131467 15 66541587 to 66541608 21 + TSS region transcription start site region 131467
Tssr134564 15 66560936 to 66560984 48 - TSS region transcription start site region 134564
Tssr134565 15 66560997 to 66561067 70 - TSS region transcription start site region 134565
Tssr134566 15 66561070 to 66561081 11 - TSS region transcription start site region 134566
Tssr134567 15 66561089 to 66561100 11 - TSS region transcription start site region 134567
D15Mit101 15 66570909 to 66571106 197 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 101
Cpgi7142 15 66577282 to 66578206 924 CpG island CpG island 7142
Phf20l1 15 66577519 to 66647043 69524 + protein coding gene PHD finger protein 20-like 1
Tssr131468 15 66577522 to 66577533 11 + TSS region transcription start site region 131468
Tssr131469 15 66577536 to 66577637 101 + TSS region transcription start site region 131469
Tssr131470 15 66579182 to 66579185 3 + TSS region transcription start site region 131470
Tssr131471 15 66604080 to 66604091 11 + TSS region transcription start site region 131471
Tssr131472 15 66615717 to 66615734 17 + TSS region transcription start site region 131472
Tssr131473 15 66615763 to 66615799 36 + TSS region transcription start site region 131473
Tssr131474 15 66642899 to 66642924 25 + TSS region transcription start site region 131474
D15Ertd509e 15 66646789 to 66647019 230 DNA segment DNA segment, Chr 15, ERATO Doi 509, expressed
Tssr131475 15 66670749 to 66670754 5 + TSS region transcription start site region 131475
Lcho4 15 66670754 to 66850721 179967 QTL liver cholesterol 4
Tg 15 66670754 to 66850721 179967 + protein coding gene thyroglobulin