Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:63275669-64210351

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49014 15 63255904 to 63278780 22876 + lincRNA gene predicted gene, 49014
Gm41335 15 63353241 to 63357026 3785 - lincRNA gene predicted gene, 41335
Gm20740 15 63414397 to 63479608 65211 - lncRNA gene predicted gene, 20740
Tssr134493 15 63470893 to 63470897 4 - TSS region transcription start site region 134493
Tssr131449 15 63476200 to 63476204 4 + TSS region transcription start site region 131449
Tssr134494 15 63479543 to 63479554 11 - TSS region transcription start site region 134494
Tssr134495 15 63479622 to 63479646 24 - TSS region transcription start site region 134495
Tssr134496 15 63479661 to 63479670 9 - TSS region transcription start site region 134496
Gm25702 15 63481214 to 63481276 62 - snRNA gene predicted gene, 25702
Gm4942 15 63490962 to 63492293 1331 - pseudogene predicted gene 4942
Amzn3 15 63517797 to 63517996 199 QTL anatomical modifier of Zfp423 3
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
D15Mit270 15 63517797 to 63517996 199 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 270
Alaa4 15 63517797 to 63517996 199 QTL alopecia areata 4
Tssr4608 15 63530300 to 63530302 2 + TSS region transcription start site region 4608
Cpgi7134 15 63572957 to 63573277 320 CpG island CpG island 7134
Tssr134497 15 63611212 to 63611224 12 - TSS region transcription start site region 134497
Tssr131450 15 63611447 to 63611471 24 + TSS region transcription start site region 131450
Gm5473 15 63631697 to 63632338 641 + pseudogene predicted pseudogene 5473
Tssr134498 15 63647890 to 63647904 14 - TSS region transcription start site region 134498
Tssr134499 15 63649119 to 63649129 10 - TSS region transcription start site region 134499
Tssr134500 15 63718246 to 63718292 46 - TSS region transcription start site region 134500
4930449C09Rik 15 63718318 to 63737296 18978 + lincRNA gene RIKEN cDNA 4930449C09 gene
Tssr131451 15 63718341 to 63718373 32 + TSS region transcription start site region 131451
Gm41336 15 63740669 to 63745351 4682 + lincRNA gene predicted gene, 41336
Gm49019 15 63751659 to 63755435 3776 + lincRNA gene predicted gene, 49019
Gm46499 15 63760161 to 63760580 419 + pseudogene predicted gene, 46499
Gsdmc 15 63775971 to 63808739 32768 - protein coding gene gasdermin C
Tssr134501 15 63808733 to 63808745 12 - TSS region transcription start site region 134501
Tssr134502 15 63808747 to 63808752 5 - TSS region transcription start site region 134502
Tssr4609 15 63814339 to 63814360 21 - TSS region transcription start site region 4609
1700065I16Rik 15 63817188 to 63819540 2352 + pseudogene RIKEN cDNA 1700065I16 gene
Gsdmc2 15 63824346 to 63845177 20831 - protein coding gene gasdermin C2
Gsdmcl1 15 63847309 to 63850942 3633 + pseudogene gasdermin C-like 1
Gsdmc3 15 63857724 to 63878558 20834 - protein coding gene gasdermin C3
Tssr4610 15 63878548 to 63878549 1 - TSS region transcription start site region 4610
Gsdmcl2 15 63880707 to 63889073 8366 + pseudogene gasdermin C-like 2
Gsdmc4 15 63891264 to 63912297 21033 - protein coding gene gasdermin C4
Tssr134503 15 63912287 to 63912297 10 - TSS region transcription start site region 134503
Gsdmcl-ps 15 63914461 to 63925453 10992 + pseudogene gasdermin C-like, pseudogene
Fam49b 15 63929094 to 64060452 131358 - protein coding gene family with sequence similarity 49, member B
Tssr134504 15 63943261 to 63943308 47 - TSS region transcription start site region 134504
Tssr134505 15 63963665 to 63963679 14 - TSS region transcription start site region 134505
Tssr134506 15 63975451 to 63975455 4 - TSS region transcription start site region 134506
Tssr134507 15 63985528 to 63985532 4 - TSS region transcription start site region 134507
Tssr134508 15 63990618 to 63990621 3 - TSS region transcription start site region 134508
Cpgi7135 15 63997434 to 63998804 1370 CpG island CpG island 7135
Tssr134509 15 63998043 to 63998054 11 - TSS region transcription start site region 134509
Tssr134510 15 63998071 to 63998101 30 - TSS region transcription start site region 134510
Tssr4611 15 63998135 to 63998138 3 - TSS region transcription start site region 4611
Tssr134511 15 63998174 to 63998185 11 - TSS region transcription start site region 134511
Tssr134512 15 64012829 to 64012836 7 - TSS region transcription start site region 134512
Tssr134513 15 64015524 to 64015540 16 - TSS region transcription start site region 134513
Tssr134514 15 64022989 to 64022993 4 - TSS region transcription start site region 134514
Tssr131452 15 64024087 to 64024094 7 + TSS region transcription start site region 131452
Gm25628 15 64025948 to 64026052 104 + snRNA gene predicted gene, 25628
A230048O21Rik 15 64027262 to 64030952 3690 unclassified gene RIKEN cDNA A230048O21 gene
Tssr131453 15 64055373 to 64055386 13 + TSS region transcription start site region 131453
Tssr134515 15 64058998 to 64059001 3 - TSS region transcription start site region 134515
Cpgi7136 15 64059555 to 64060956 1401 CpG island CpG island 7136
Tssr134516 15 64059782 to 64059786 4 - TSS region transcription start site region 134516
Tssr134517 15 64060218 to 64060278 60 - TSS region transcription start site region 134517
Tssr134518 15 64060309 to 64060318 9 - TSS region transcription start site region 134518
Tssr134519 15 64060327 to 64060435 108 - TSS region transcription start site region 134519
Tssr134520 15 64060439 to 64060478 39 - TSS region transcription start site region 134520
Tssr134521 15 64060676 to 64060690 14 - TSS region transcription start site region 134521
Asap1 15 64086857 to 64382919 296062 - protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain1
Tssr134522 15 64095339 to 64095341 2 - TSS region transcription start site region 134522
Tssr131454 15 64098316 to 64098351 35 + TSS region transcription start site region 131454
Gm20717 15 64098317 to 64101397 3080 + antisense lncRNA gene predicted gene 20717
Tssr134523 15 64110988 to 64111003 15 - TSS region transcription start site region 134523
Tssr134524 15 64133247 to 64133264 17 - TSS region transcription start site region 134524
Tssr134525 15 64135803 to 64135806 3 - TSS region transcription start site region 134525
Tssr134526 15 64156259 to 64156264 5 - TSS region transcription start site region 134526
Tssr131455 15 64173270 to 64173278 8 + TSS region transcription start site region 131455
Tssr134527 15 64182423 to 64182428 5 - TSS region transcription start site region 134527