Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:60943201-64643334

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930402D18Rik 15 60953304 to 60967339 14035 + antisense lncRNA gene RIKEN cDNA 4930402D18 gene
Tssr131403 15 61157829 to 61157848 19 + TSS region transcription start site region 131403
Gm38563 15 61157869 to 61165735 7866 + lincRNA gene predicted gene, 38563
Gm49497 15 61184151 to 61241065 56914 + lincRNA gene predicted gene, 49497
Gm29904 15 61288441 to 61331370 42929 + lincRNA gene predicted gene, 29904
D15Mit88 15 61353425 to 61353634 209 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 88
Gm24696 15 61357871 to 61358004 133 - snoRNA gene predicted gene, 24696
Tssr131404 15 61389635 to 61389636 1 + TSS region transcription start site region 131404
Tssr134482 15 61441657 to 61441686 29 - TSS region transcription start site region 134482
Gm49498 15 61534676 to 61544183 9507 - lincRNA gene predicted gene, 49498
Tssr134483 15 61546439 to 61546450 11 - TSS region transcription start site region 134483
D15Ertd489e 15 61557801 to 61558037 236 DNA segment DNA segment, Chr 15, ERATO Doi 489, expressed
D15Mit207 15 61648168 to 61648276 108 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 207
D15Mit209 15 61681464 to 61681588 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 209
Vtbt17 15 61681464 to 61681588 124 QTL vertebral trabecular bone trait 17
D030024E09Rik 15 61699284 to 61774451 75167 - lincRNA gene RIKEN cDNA D030024E09 gene
Gm18154 15 61826247 to 61826835 588 + pseudogene predicted gene, 18154
D15Mit168 15 61921442 to 61921590 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 168
D15Mit27 15 61934830 to 61935034 204 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 27
Gm18788 15 61962870 to 61963483 613 + pseudogene predicted gene, 18788
Gm37947 15 61979241 to 61983302 4061 - unclassified gene predicted gene, 37947
Cpgi7130 15 61984876 to 61988361 3485 CpG island CpG island 7130
Tssr134484 15 61985157 to 61985174 17 - TSS region transcription start site region 134484
Tssr131405 15 61985377 to 61985397 20 + TSS region transcription start site region 131405
Myc 15 61985391 to 61990374 4983 + protein coding gene myelocytomatosis oncogene
Tssr131406 15 61985540 to 61985556 16 + TSS region transcription start site region 131406
Tssr131407 15 61987038 to 61987059 21 + TSS region transcription start site region 131407
D15Kyo1 15 61987280 to 61987432 152 DNA segment DNA segment, Chr 15, Kyoto University 1
D15Mit17 15 61987292 to 61987432 140 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 17
Tria2 15 61987292 to 61987432 140 QTL T cell receptor induced activation 2
Tssr131408 15 61987304 to 61987318 14 + TSS region transcription start site region 131408
Tssr131409 15 61987359 to 61987388 29 + TSS region transcription start site region 131409
Tssr131410 15 61987410 to 61987491 81 + TSS region transcription start site region 131410
Tssr131411 15 61987492 to 61987521 29 + TSS region transcription start site region 131411
Tssr131412 15 61987608 to 61987623 15 + TSS region transcription start site region 131412
Tssr131413 15 61987679 to 61987753 74 + TSS region transcription start site region 131413
Tssr131414 15 61987791 to 61987800 9 + TSS region transcription start site region 131414
Tssr131415 15 61988018 to 61988116 98 + TSS region transcription start site region 131415
Tssr131416 15 61988164 to 61988173 9 + TSS region transcription start site region 131416
Tssr131417 15 61988226 to 61988237 11 + TSS region transcription start site region 131417
Tssr131418 15 61988244 to 61988251 7 + TSS region transcription start site region 131418
Tssr131419 15 61988957 to 61988961 4 + TSS region transcription start site region 131419
Tssr131420 15 61989392 to 61989405 13 + TSS region transcription start site region 131420
Tssr131421 15 61989417 to 61989435 18 + TSS region transcription start site region 131421
Cpgi7131 15 61989432 to 61989731 299 CpG island CpG island 7131
Tssr131422 15 61989441 to 61989454 13 + TSS region transcription start site region 131422
Tssr131423 15 61989482 to 61989494 12 + TSS region transcription start site region 131423
Tssr134485 15 61989543 to 61989558 15 - TSS region transcription start site region 134485
Tssr131424 15 61989556 to 61989567 11 + TSS region transcription start site region 131424
Tssr131425 15 61990034 to 61990058 24 + TSS region transcription start site region 131425
Tssr131426 15 61990104 to 61990109 5 + TSS region transcription start site region 131426
Cpgi7132 15 62037045 to 62037273 228 CpG island CpG island 7132
Cpgi7133 15 62037636 to 62038285 649 CpG island CpG island 7133
Pvt1 15 62037986 to 62260215 222229 + lincRNA gene Pvt1 oncogene
Tssr131427 15 62037996 to 62038058 62 + TSS region transcription start site region 131427
Gm27913 15 62038029 to 62038201 172 + unclassified non-coding RNA gene predicted gene, 27913
Tssr134486 15 62039138 to 62039154 16 - TSS region transcription start site region 134486
Tssr134487 15 62039159 to 62039172 13 - TSS region transcription start site region 134487
Tssr131428 15 62039216 to 62039262 46 + TSS region transcription start site region 131428
Tssr131429 15 62039284 to 62039292 8 + TSS region transcription start site region 131429
Tssr131430 15 62056799 to 62056803 4 + TSS region transcription start site region 131430
Tssr131431 15 62060777 to 62060782 5 + TSS region transcription start site region 131431
Tssr131432 15 62080019 to 62080024 5 + TSS region transcription start site region 131432
Gm27782 15 62080245 to 62080443 198 + unclassified non-coding RNA gene predicted gene, 27782
Tssr131433 15 62086289 to 62086293 4 + TSS region transcription start site region 131433
Tssr134488 15 62092718 to 62092756 38 - TSS region transcription start site region 134488
Gm27718 15 62107187 to 62107272 85 + unclassified non-coding RNA gene predicted gene, 27718
Tssr131434 15 62152949 to 62152999 50 + TSS region transcription start site region 131434
Tssr131435 15 62169963 to 62169967 4 + TSS region transcription start site region 131435
Gm27957 15 62175422 to 62175548 126 + unclassified non-coding RNA gene predicted gene, 27957
Tssr131436 15 62178262 to 62178286 24 + TSS region transcription start site region 131436
Tssr131437 15 62181745 to 62181761 16 + TSS region transcription start site region 131437
H2afy3 15 62218221 to 62219332 1111 - pseudogene H2A histone family, member Y3
Tssr134489 15 62219446 to 62219452 6 - TSS region transcription start site region 134489
Tssr131438 15 62220510 to 62220517 7 + TSS region transcription start site region 131438
Tssr131439 15 62246524 to 62246528 4 + TSS region transcription start site region 131439
Tssr131440 15 62250553 to 62250556 3 + TSS region transcription start site region 131440
2900056L01Rik 15 62259291 to 62260214 923 unclassified gene RIKEN cDNA 2900056L01 gene
Tssr131441 15 62264414 to 62264418 4 + TSS region transcription start site region 131441
Tssr131442 15 62328715 to 62328721 6 + TSS region transcription start site region 131442
Tssr4607 15 62339522 to 62339524 2 - TSS region transcription start site region 4607
Tssr134490 15 62547960 to 62547968 8 - TSS region transcription start site region 134490
Gm24810 15 62652935 to 62653004 69 - miRNA gene predicted gene, 24810
Gm41333 15 62669184 to 62679142 9958 + lincRNA gene predicted gene, 41333
Tssr131443 15 62730821 to 62730841 20 + TSS region transcription start site region 131443
Tssr131444 15 62741060 to 62741070 10 + TSS region transcription start site region 131444
Gm22521 15 62793201 to 62793334 133 + snoRNA gene predicted gene, 22521
Tssr134491 15 62809289 to 62809298 9 - TSS region transcription start site region 134491
D15Mit208 15 62826050 to 62826194 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 208
Tssr131445 15 62886369 to 62886375 6 + TSS region transcription start site region 131445
Tssr131446 15 62893880 to 62893890 10 + TSS region transcription start site region 131446
Gm30113 15 62954216 to 62957872 3656 + lncRNA gene predicted gene, 30113
Tsg101-ps 15 62980648 to 62981817 1169 + pseudogene tumor susceptibility gene 101, pseudogene
Tssr131447 15 62981153 to 62981179 26 + TSS region transcription start site region 131447
Gm41334 15 63067500 to 63070764 3264 - lncRNA gene predicted gene, 41334
Gm30159 15 63110465 to 63145446 34981 - lincRNA gene predicted gene, 30159
Gm49013 15 63146233 to 63146716 483 + pseudogene predicted gene, 49013
Gm49014 15 63255904 to 63278780 22876 + lincRNA gene predicted gene, 49014
Tssr131448 15 63255938 to 63255953 15 + TSS region transcription start site region 131448
Tssr134492 15 63270456 to 63270461 5 - TSS region transcription start site region 134492
Gm41335 15 63353241 to 63357026 3785 - lincRNA gene predicted gene, 41335
Gm20740 15 63414397 to 63479608 65211 - lncRNA gene predicted gene, 20740
Tssr134493 15 63470893 to 63470897 4 - TSS region transcription start site region 134493
Tssr131449 15 63476200 to 63476204 4 + TSS region transcription start site region 131449
Tssr134494 15 63479543 to 63479554 11 - TSS region transcription start site region 134494
Tssr134495 15 63479622 to 63479646 24 - TSS region transcription start site region 134495
Tssr134496 15 63479661 to 63479670 9 - TSS region transcription start site region 134496
Gm25702 15 63481214 to 63481276 62 - snRNA gene predicted gene, 25702
Gm4942 15 63490962 to 63492293 1331 - pseudogene predicted gene 4942
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
D15Mit270 15 63517797 to 63517996 199 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 270
Alaa4 15 63517797 to 63517996 199 QTL alopecia areata 4
Amzn3 15 63517797 to 63517996 199 QTL anatomical modifier of Zfp423 3
Tssr4608 15 63530300 to 63530302 2 + TSS region transcription start site region 4608
Cpgi7134 15 63572957 to 63573277 320 CpG island CpG island 7134
Tssr134497 15 63611212 to 63611224 12 - TSS region transcription start site region 134497
Tssr131450 15 63611447 to 63611471 24 + TSS region transcription start site region 131450
Gm5473 15 63631697 to 63632338 641 + pseudogene predicted pseudogene 5473
Tssr134498 15 63647890 to 63647904 14 - TSS region transcription start site region 134498
Tssr134499 15 63649119 to 63649129 10 - TSS region transcription start site region 134499
Tssr134500 15 63718246 to 63718292 46 - TSS region transcription start site region 134500
4930449C09Rik 15 63718318 to 63737296 18978 + lincRNA gene RIKEN cDNA 4930449C09 gene
Tssr131451 15 63718341 to 63718373 32 + TSS region transcription start site region 131451
Gm41336 15 63740669 to 63745351 4682 + lincRNA gene predicted gene, 41336
Gm49019 15 63751659 to 63755435 3776 + lincRNA gene predicted gene, 49019
Gm46499 15 63760161 to 63760580 419 + pseudogene predicted gene, 46499
Gsdmc 15 63775971 to 63808739 32768 - protein coding gene gasdermin C
Tssr134501 15 63808733 to 63808745 12 - TSS region transcription start site region 134501
Tssr134502 15 63808747 to 63808752 5 - TSS region transcription start site region 134502
Tssr4609 15 63814339 to 63814360 21 - TSS region transcription start site region 4609
1700065I16Rik 15 63817188 to 63819540 2352 + pseudogene RIKEN cDNA 1700065I16 gene
Gsdmc2 15 63824346 to 63845177 20831 - protein coding gene gasdermin C2
Gsdmcl1 15 63847309 to 63850942 3633 + pseudogene gasdermin C-like 1
Gsdmc3 15 63857724 to 63878558 20834 - protein coding gene gasdermin C3
Tssr4610 15 63878548 to 63878549 1 - TSS region transcription start site region 4610
Gsdmcl2 15 63880707 to 63889073 8366 + pseudogene gasdermin C-like 2
Gsdmc4 15 63891264 to 63912297 21033 - protein coding gene gasdermin C4
Tssr134503 15 63912287 to 63912297 10 - TSS region transcription start site region 134503
Gsdmcl-ps 15 63914461 to 63925453 10992 + pseudogene gasdermin C-like, pseudogene
Fam49b 15 63929094 to 64060452 131358 - protein coding gene family with sequence similarity 49, member B
Tssr134504 15 63943261 to 63943308 47 - TSS region transcription start site region 134504
Tssr134505 15 63963665 to 63963679 14 - TSS region transcription start site region 134505
Tssr134506 15 63975451 to 63975455 4 - TSS region transcription start site region 134506
Tssr134507 15 63985528 to 63985532 4 - TSS region transcription start site region 134507
Tssr134508 15 63990618 to 63990621 3 - TSS region transcription start site region 134508
Cpgi7135 15 63997434 to 63998804 1370 CpG island CpG island 7135
Tssr134509 15 63998043 to 63998054 11 - TSS region transcription start site region 134509
Tssr134510 15 63998071 to 63998101 30 - TSS region transcription start site region 134510
Tssr4611 15 63998135 to 63998138 3 - TSS region transcription start site region 4611
Tssr134511 15 63998174 to 63998185 11 - TSS region transcription start site region 134511
Tssr134512 15 64012829 to 64012836 7 - TSS region transcription start site region 134512
Tssr134513 15 64015524 to 64015540 16 - TSS region transcription start site region 134513
Tssr134514 15 64022989 to 64022993 4 - TSS region transcription start site region 134514
Tssr131452 15 64024087 to 64024094 7 + TSS region transcription start site region 131452
Gm25628 15 64025948 to 64026052 104 + snRNA gene predicted gene, 25628
A230048O21Rik 15 64027262 to 64030952 3690 unclassified gene RIKEN cDNA A230048O21 gene
Tssr131453 15 64055373 to 64055386 13 + TSS region transcription start site region 131453
Tssr134515 15 64058998 to 64059001 3 - TSS region transcription start site region 134515
Cpgi7136 15 64059555 to 64060956 1401 CpG island CpG island 7136
Tssr134516 15 64059782 to 64059786 4 - TSS region transcription start site region 134516
Tssr134517 15 64060218 to 64060278 60 - TSS region transcription start site region 134517
Tssr134518 15 64060309 to 64060318 9 - TSS region transcription start site region 134518
Tssr134519 15 64060327 to 64060435 108 - TSS region transcription start site region 134519
Tssr134520 15 64060439 to 64060478 39 - TSS region transcription start site region 134520
Tssr134521 15 64060676 to 64060690 14 - TSS region transcription start site region 134521
Asap1 15 64086857 to 64382919 296062 - protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain1
Tssr134522 15 64095339 to 64095341 2 - TSS region transcription start site region 134522
Tssr131454 15 64098316 to 64098351 35 + TSS region transcription start site region 131454
Gm20717 15 64098317 to 64101397 3080 + antisense lncRNA gene predicted gene 20717
Tssr134523 15 64110988 to 64111003 15 - TSS region transcription start site region 134523
Tssr134524 15 64133247 to 64133264 17 - TSS region transcription start site region 134524
Tssr134525 15 64135803 to 64135806 3 - TSS region transcription start site region 134525
Tssr134526 15 64156259 to 64156264 5 - TSS region transcription start site region 134526
Tssr131455 15 64173270 to 64173278 8 + TSS region transcription start site region 131455
Tssr134527 15 64182423 to 64182428 5 - TSS region transcription start site region 134527
Tssr131456 15 64220503 to 64220508 5 + TSS region transcription start site region 131456
Tssr134528 15 64242690 to 64242698 8 - TSS region transcription start site region 134528
Tssr134529 15 64285288 to 64285296 8 - TSS region transcription start site region 134529
Tssr134530 15 64303182 to 64303187 5 - TSS region transcription start site region 134530
Tssr134531 15 64304952 to 64304970 18 - TSS region transcription start site region 134531
Tssr134532 15 64304996 to 64305018 22 - TSS region transcription start site region 134532
Cpgi7137 15 64311779 to 64313251 1472 CpG island CpG island 7137
Tssr134533 15 64312492 to 64312508 16 - TSS region transcription start site region 134533
Tssr134534 15 64312513 to 64312539 26 - TSS region transcription start site region 134534
Tssr134535 15 64312546 to 64312584 38 - TSS region transcription start site region 134535
Tssr134536 15 64312604 to 64312630 26 - TSS region transcription start site region 134536
Tssr134537 15 64312636 to 64312692 56 - TSS region transcription start site region 134537
Tssr134538 15 64312793 to 64312814 21 - TSS region transcription start site region 134538
1700010G06Rik 15 64314497 to 64316076 1579 + antisense lncRNA gene RIKEN cDNA 1700010G06 gene
Gm10926 15 64328028 to 64329017 989 - unclassified non-coding RNA gene predicted gene 10926
Cpgi7138 15 64382151 to 64383262 1111 CpG island CpG island 7138
Tssr134539 15 64382736 to 64382845 109 - TSS region transcription start site region 134539
Tssr134540 15 64382908 to 64382936 28 - TSS region transcription start site region 134540
Tssr134541 15 64382937 to 64382958 21 - TSS region transcription start site region 134541
Tssr134542 15 64383023 to 64383035 12 - TSS region transcription start site region 134542
Tssr134543 15 64383039 to 64383069 30 - TSS region transcription start site region 134543
Tssr134544 15 64383076 to 64383087 11 - TSS region transcription start site region 134544
Gm30563 15 64396379 to 64433598 37219 + lincRNA gene predicted gene, 30563
D15Mit122 15 64434485 to 64434630 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 122
Hfib1 15 64434485 to 64434630 145 QTL hepatic fibrogenesis 1