Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:58899289-59849302

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045
Gm7691 15 59238489 to 59239002 513 + pseudogene predicted gene 7691
Tssr134431 15 59269789 to 59269794 5 - TSS region transcription start site region 134431
Tssr134432 15 59270224 to 59270234 10 - TSS region transcription start site region 134432
Tssr134433 15 59273296 to 59273300 4 - TSS region transcription start site region 134433
Tssr134434 15 59275191 to 59275194 3 - TSS region transcription start site region 134434
Tssr134435 15 59275202 to 59275246 44 - TSS region transcription start site region 134435
Tssr131359 15 59275356 to 59275374 18 + TSS region transcription start site region 131359
Tssr131360 15 59275379 to 59275392 13 + TSS region transcription start site region 131360
Tssr4600 15 59275394 to 59275397 3 + TSS region transcription start site region 4600
Gm36617 15 59275396 to 59291946 16550 + lincRNA gene predicted gene, 36617
Tssr131361 15 59275412 to 59275417 5 + TSS region transcription start site region 131361
Tssr131362 15 59302626 to 59302635 9 + TSS region transcription start site region 131362
Cpgi7123 15 59306782 to 59306982 200 CpG island CpG island 7123
Zfp572 15 59306948 to 59312013 5065 + pseudogene zinc finger protein 572
Cpgi7124 15 59314473 to 59315564 1091 CpG island CpG island 7124
Tssr131363 15 59315030 to 59315087 57 + TSS region transcription start site region 131363
Tssr131364 15 59315088 to 59315128 40 + TSS region transcription start site region 131364
Sqle 15 59315092 to 59331193 16101 + protein coding gene squalene epoxidase
Tssr131365 15 59315148 to 59315173 25 + TSS region transcription start site region 131365
Tssr131366 15 59315195 to 59315210 15 + TSS region transcription start site region 131366
Cpgi7125 15 59315891 to 59316059 168 CpG island CpG island 7125
Tssr131367 15 59323609 to 59323645 36 + TSS region transcription start site region 131367
Washc5 15 59331997 to 59374167 42170 - protein coding gene WASH complex subunit 5
Cpgi7126 15 59373805 to 59374484 679 CpG island CpG island 7126
Tssr134436 15 59374133 to 59374144 11 - TSS region transcription start site region 134436
Tssr134437 15 59374149 to 59374199 50 - TSS region transcription start site region 134437
Tssr131368 15 59374231 to 59374279 48 + TSS region transcription start site region 131368
Nsmce2 15 59374247 to 59601684 227437 + protein coding gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Tssr131369 15 59374289 to 59374302 13 + TSS region transcription start site region 131369
Tssr4601 15 59416622 to 59416640 18 - TSS region transcription start site region 4601
Tssr4602 15 59425129 to 59425132 3 + TSS region transcription start site region 4602
Tssr131370 15 59441038 to 59441043 5 + TSS region transcription start site region 131370
Tssr131371 15 59459775 to 59459814 39 + TSS region transcription start site region 131371
Tssr131372 15 59461996 to 59462023 27 + TSS region transcription start site region 131372
Tssr131373 15 59469389 to 59469392 3 + TSS region transcription start site region 131373
6330417A16Rik 15 59486879 to 59488626 1747 unclassified gene RIKEN cDNA 6330417A16 gene
Tssr131374 15 59489992 to 59490024 32 + TSS region transcription start site region 131374
Tssr131375 15 59494697 to 59494728 31 + TSS region transcription start site region 131375
Tssr131376 15 59522988 to 59522993 5 + TSS region transcription start site region 131376
Tssr134438 15 59524580 to 59524588 8 - TSS region transcription start site region 134438
Tssr134439 15 59524623 to 59524662 39 - TSS region transcription start site region 134439
Tssr134440 15 59525575 to 59525588 13 - TSS region transcription start site region 134440
Tssr131377 15 59525892 to 59525894 2 + TSS region transcription start site region 131377
Tssr134441 15 59542200 to 59542203 3 - TSS region transcription start site region 134441
Tssr131378 15 59599108 to 59599136 28 + TSS region transcription start site region 131378
Tssr134442 15 59604300 to 59604323 23 - TSS region transcription start site region 134442
Tssr131379 15 59612105 to 59612110 5 + TSS region transcription start site region 131379
Tssr131380 15 59618285 to 59618295 10 + TSS region transcription start site region 131380
Gm36677 15 59618590 to 59619055 465 + lincRNA gene predicted gene, 36677
Tssr131381 15 59618684 to 59618715 31 + TSS region transcription start site region 131381
Tssr131382 15 59620088 to 59620104 16 + TSS region transcription start site region 131382
Tssr131383 15 59620265 to 59620279 14 + TSS region transcription start site region 131383
Tssr134443 15 59646354 to 59646358 4 - TSS region transcription start site region 134443
Cpgi7127 15 59647439 to 59649845 2406 CpG island CpG island 7127
Tssr134444 15 59648095 to 59648136 41 - TSS region transcription start site region 134444
Tssr134445 15 59648142 to 59648168 26 - TSS region transcription start site region 134445
Tssr131384 15 59648297 to 59648307 10 + TSS region transcription start site region 131384
Tssr131385 15 59648356 to 59648369 13 + TSS region transcription start site region 131385
Tssr131386 15 59648422 to 59648431 9 + TSS region transcription start site region 131386
Tssr131387 15 59648503 to 59648537 34 + TSS region transcription start site region 131387
Tssr131388 15 59648550 to 59648561 11 + TSS region transcription start site region 131388
Tssr131389 15 59648578 to 59648589 11 + TSS region transcription start site region 131389
Tssr131390 15 59648644 to 59648687 43 + TSS region transcription start site region 131390
Trib1 15 59648654 to 59657099 8445 + protein coding gene tribbles pseudokinase 1
Tssr131391 15 59648694 to 59648705 11 + TSS region transcription start site region 131391
Tssr4603 15 59650270 to 59650277 7 - TSS region transcription start site region 4603
Tssr134446 15 59650603 to 59650614 11 - TSS region transcription start site region 134446
Tssr131392 15 59650724 to 59650757 33 + TSS region transcription start site region 131392
Tssr134447 15 59652831 to 59652842 11 - TSS region transcription start site region 134447
Tssr134448 15 59652844 to 59652856 12 - TSS region transcription start site region 134448
Tssr134449 15 59652902 to 59652914 12 - TSS region transcription start site region 134449
Tssr131393 15 59653085 to 59653133 48 + TSS region transcription start site region 131393
Tssr131394 15 59653411 to 59653423 12 + TSS region transcription start site region 131394
Gm20150 15 59671622 to 59672101 479 - pseudogene predicted gene, 20150
Tssr131395 15 59695818 to 59695819 1 + TSS region transcription start site region 131395
D15Mit50 15 59719678 to 59719820 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 50
Tssr4604 15 59739279 to 59739305 26 - TSS region transcription start site region 4604
Gm19510 15 59788417 to 59794959 6542 - lincRNA gene predicted gene, 19510
Tssr134450 15 59794954 to 59794959 5 - TSS region transcription start site region 134450
Tssr134451 15 59795766 to 59795777 11 - TSS region transcription start site region 134451
Gm36819 15 59823417 to 59831605 8188 + lncRNA gene predicted gene, 36819