Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:58850412-59700417

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045
Gm7691 15 59238489 to 59239002 513 + pseudogene predicted gene 7691
Tssr134431 15 59269789 to 59269794 5 - TSS region transcription start site region 134431
Tssr134432 15 59270224 to 59270234 10 - TSS region transcription start site region 134432
Tssr134433 15 59273296 to 59273300 4 - TSS region transcription start site region 134433
Tssr134434 15 59275191 to 59275194 3 - TSS region transcription start site region 134434
Tssr134435 15 59275202 to 59275246 44 - TSS region transcription start site region 134435
Tssr131359 15 59275356 to 59275374 18 + TSS region transcription start site region 131359
Tssr131360 15 59275379 to 59275392 13 + TSS region transcription start site region 131360
Tssr4600 15 59275394 to 59275397 3 + TSS region transcription start site region 4600
Gm36617 15 59275396 to 59291946 16550 + lincRNA gene predicted gene, 36617
Tssr131361 15 59275412 to 59275417 5 + TSS region transcription start site region 131361
Tssr131362 15 59302626 to 59302635 9 + TSS region transcription start site region 131362
Cpgi7123 15 59306782 to 59306982 200 CpG island CpG island 7123
Zfp572 15 59306948 to 59312013 5065 + pseudogene zinc finger protein 572
Cpgi7124 15 59314473 to 59315564 1091 CpG island CpG island 7124
Tssr131363 15 59315030 to 59315087 57 + TSS region transcription start site region 131363
Tssr131364 15 59315088 to 59315128 40 + TSS region transcription start site region 131364
Sqle 15 59315092 to 59331193 16101 + protein coding gene squalene epoxidase
Tssr131365 15 59315148 to 59315173 25 + TSS region transcription start site region 131365
Tssr131366 15 59315195 to 59315210 15 + TSS region transcription start site region 131366
Cpgi7125 15 59315891 to 59316059 168 CpG island CpG island 7125
Tssr131367 15 59323609 to 59323645 36 + TSS region transcription start site region 131367
Washc5 15 59331997 to 59374167 42170 - protein coding gene WASH complex subunit 5
Cpgi7126 15 59373805 to 59374484 679 CpG island CpG island 7126
Tssr134436 15 59374133 to 59374144 11 - TSS region transcription start site region 134436
Tssr134437 15 59374149 to 59374199 50 - TSS region transcription start site region 134437
Tssr131368 15 59374231 to 59374279 48 + TSS region transcription start site region 131368
Nsmce2 15 59374247 to 59601684 227437 + protein coding gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Tssr131369 15 59374289 to 59374302 13 + TSS region transcription start site region 131369
Tssr4601 15 59416622 to 59416640 18 - TSS region transcription start site region 4601
Tssr4602 15 59425129 to 59425132 3 + TSS region transcription start site region 4602
Tssr131370 15 59441038 to 59441043 5 + TSS region transcription start site region 131370
Tssr131371 15 59459775 to 59459814 39 + TSS region transcription start site region 131371
Tssr131372 15 59461996 to 59462023 27 + TSS region transcription start site region 131372
Tssr131373 15 59469389 to 59469392 3 + TSS region transcription start site region 131373
6330417A16Rik 15 59486879 to 59488626 1747 unclassified gene RIKEN cDNA 6330417A16 gene
Tssr131374 15 59489992 to 59490024 32 + TSS region transcription start site region 131374
Tssr131375 15 59494697 to 59494728 31 + TSS region transcription start site region 131375
Tssr131376 15 59522988 to 59522993 5 + TSS region transcription start site region 131376
Tssr134438 15 59524580 to 59524588 8 - TSS region transcription start site region 134438
Tssr134439 15 59524623 to 59524662 39 - TSS region transcription start site region 134439
Tssr134440 15 59525575 to 59525588 13 - TSS region transcription start site region 134440
Tssr131377 15 59525892 to 59525894 2 + TSS region transcription start site region 131377
Tssr134441 15 59542200 to 59542203 3 - TSS region transcription start site region 134441
Tssr131378 15 59599108 to 59599136 28 + TSS region transcription start site region 131378
Tssr134442 15 59604300 to 59604323 23 - TSS region transcription start site region 134442
Tssr131379 15 59612105 to 59612110 5 + TSS region transcription start site region 131379
Tssr131380 15 59618285 to 59618295 10 + TSS region transcription start site region 131380
Gm36677 15 59618590 to 59619055 465 + lincRNA gene predicted gene, 36677
Tssr131381 15 59618684 to 59618715 31 + TSS region transcription start site region 131381
Tssr131382 15 59620088 to 59620104 16 + TSS region transcription start site region 131382
Tssr131383 15 59620265 to 59620279 14 + TSS region transcription start site region 131383
Tssr134443 15 59646354 to 59646358 4 - TSS region transcription start site region 134443
Cpgi7127 15 59647439 to 59649845 2406 CpG island CpG island 7127
Tssr134444 15 59648095 to 59648136 41 - TSS region transcription start site region 134444
Tssr134445 15 59648142 to 59648168 26 - TSS region transcription start site region 134445
Tssr131384 15 59648297 to 59648307 10 + TSS region transcription start site region 131384
Tssr131385 15 59648356 to 59648369 13 + TSS region transcription start site region 131385
Tssr131386 15 59648422 to 59648431 9 + TSS region transcription start site region 131386
Tssr131387 15 59648503 to 59648537 34 + TSS region transcription start site region 131387
Tssr131388 15 59648550 to 59648561 11 + TSS region transcription start site region 131388
Tssr131389 15 59648578 to 59648589 11 + TSS region transcription start site region 131389
Tssr131390 15 59648644 to 59648687 43 + TSS region transcription start site region 131390
Trib1 15 59648654 to 59657099 8445 + protein coding gene tribbles pseudokinase 1
Tssr131391 15 59648694 to 59648705 11 + TSS region transcription start site region 131391
Tssr4603 15 59650270 to 59650277 7 - TSS region transcription start site region 4603
Tssr134446 15 59650603 to 59650614 11 - TSS region transcription start site region 134446
Tssr131392 15 59650724 to 59650757 33 + TSS region transcription start site region 131392
Tssr134447 15 59652831 to 59652842 11 - TSS region transcription start site region 134447
Tssr134448 15 59652844 to 59652856 12 - TSS region transcription start site region 134448
Tssr134449 15 59652902 to 59652914 12 - TSS region transcription start site region 134449
Tssr131393 15 59653085 to 59653133 48 + TSS region transcription start site region 131393
Tssr131394 15 59653411 to 59653423 12 + TSS region transcription start site region 131394
Gm20150 15 59671622 to 59672101 479 - pseudogene predicted gene, 20150
Tssr131395 15 59695818 to 59695819 1 + TSS region transcription start site region 131395