Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:58682109-59482122

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41329 15 58759887 to 58763828 3941 + lncRNA gene predicted gene, 41329
Gm20712 15 58780461 to 58781951 1490 - sense overlapping lncRNA gene predicted gene 20712
Tmem65 15 58782269 to 58823638 41369 - protein coding gene transmembrane protein 65
Tssr131346 15 58802783 to 58802794 11 + TSS region transcription start site region 131346
Tssr134402 15 58818128 to 58818133 5 - TSS region transcription start site region 134402
Gm24041 15 58819323 to 58819478 155 - snRNA gene predicted gene, 24041
Cpgi7117 15 58822511 to 58824170 1659 CpG island CpG island 7117
Tssr134403 15 58823407 to 58823459 52 - TSS region transcription start site region 134403
Tssr134404 15 58823465 to 58823468 3 - TSS region transcription start site region 134404
Tssr134405 15 58823471 to 58823482 11 - TSS region transcription start site region 134405
Tssr134406 15 58823566 to 58823581 15 - TSS region transcription start site region 134406
Tssr134407 15 58823584 to 58823602 18 - TSS region transcription start site region 134407
Tssr134408 15 58823610 to 58823621 11 - TSS region transcription start site region 134408
Tssr134409 15 58823631 to 58823643 12 - TSS region transcription start site region 134409
Tssr131347 15 58823772 to 58823783 11 + TSS region transcription start site region 131347
Tssr131348 15 58823820 to 58823825 5 + TSS region transcription start site region 131348
Ube2d4 15 58846590 to 58847321 731 - protein coding gene ubiquitin-conjugating enzyme E2D 4
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045
Gm7691 15 59238489 to 59239002 513 + pseudogene predicted gene 7691
Tssr134431 15 59269789 to 59269794 5 - TSS region transcription start site region 134431
Tssr134432 15 59270224 to 59270234 10 - TSS region transcription start site region 134432
Tssr134433 15 59273296 to 59273300 4 - TSS region transcription start site region 134433
Tssr134434 15 59275191 to 59275194 3 - TSS region transcription start site region 134434
Tssr134435 15 59275202 to 59275246 44 - TSS region transcription start site region 134435
Tssr131359 15 59275356 to 59275374 18 + TSS region transcription start site region 131359
Tssr131360 15 59275379 to 59275392 13 + TSS region transcription start site region 131360
Tssr4600 15 59275394 to 59275397 3 + TSS region transcription start site region 4600
Gm36617 15 59275396 to 59291946 16550 + lincRNA gene predicted gene, 36617
Tssr131361 15 59275412 to 59275417 5 + TSS region transcription start site region 131361
Tssr131362 15 59302626 to 59302635 9 + TSS region transcription start site region 131362
Cpgi7123 15 59306782 to 59306982 200 CpG island CpG island 7123
Zfp572 15 59306948 to 59312013 5065 + pseudogene zinc finger protein 572
Cpgi7124 15 59314473 to 59315564 1091 CpG island CpG island 7124
Tssr131363 15 59315030 to 59315087 57 + TSS region transcription start site region 131363
Tssr131364 15 59315088 to 59315128 40 + TSS region transcription start site region 131364
Sqle 15 59315092 to 59331193 16101 + protein coding gene squalene epoxidase
Tssr131365 15 59315148 to 59315173 25 + TSS region transcription start site region 131365
Tssr131366 15 59315195 to 59315210 15 + TSS region transcription start site region 131366
Cpgi7125 15 59315891 to 59316059 168 CpG island CpG island 7125
Tssr131367 15 59323609 to 59323645 36 + TSS region transcription start site region 131367
Washc5 15 59331997 to 59374167 42170 - protein coding gene WASH complex subunit 5
Cpgi7126 15 59373805 to 59374484 679 CpG island CpG island 7126
Tssr134436 15 59374133 to 59374144 11 - TSS region transcription start site region 134436
Tssr134437 15 59374149 to 59374199 50 - TSS region transcription start site region 134437
Tssr131368 15 59374231 to 59374279 48 + TSS region transcription start site region 131368
Nsmce2 15 59374247 to 59601684 227437 + protein coding gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Tssr131369 15 59374289 to 59374302 13 + TSS region transcription start site region 131369
Tssr4601 15 59416622 to 59416640 18 - TSS region transcription start site region 4601
Tssr4602 15 59425129 to 59425132 3 + TSS region transcription start site region 4602
Tssr131370 15 59441038 to 59441043 5 + TSS region transcription start site region 131370
Tssr131371 15 59459775 to 59459814 39 + TSS region transcription start site region 131371
Tssr131372 15 59461996 to 59462023 27 + TSS region transcription start site region 131372
Tssr131373 15 59469389 to 59469392 3 + TSS region transcription start site region 131373