Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:58563973-59214010

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fer1l6 15 58542112 to 58665087 122975 + protein coding gene fer-1-like 6 (C. elegans)
Gm23789 15 58565614 to 58565914 300 + unclassified non-coding RNA gene predicted gene, 23789
Gm36451 15 58589003 to 58597096 8093 - lncRNA gene predicted gene, 36451
Tssr131344 15 58648506 to 58648511 5 + TSS region transcription start site region 131344
Tssr131345 15 58648516 to 58648539 23 + TSS region transcription start site region 131345
Gm41329 15 58759887 to 58763828 3941 + lncRNA gene predicted gene, 41329
Gm20712 15 58780461 to 58781951 1490 - sense overlapping lncRNA gene predicted gene 20712
Tmem65 15 58782269 to 58823638 41369 - protein coding gene transmembrane protein 65
Tssr131346 15 58802783 to 58802794 11 + TSS region transcription start site region 131346
Tssr134402 15 58818128 to 58818133 5 - TSS region transcription start site region 134402
Gm24041 15 58819323 to 58819478 155 - snRNA gene predicted gene, 24041
Cpgi7117 15 58822511 to 58824170 1659 CpG island CpG island 7117
Tssr134403 15 58823407 to 58823459 52 - TSS region transcription start site region 134403
Tssr134404 15 58823465 to 58823468 3 - TSS region transcription start site region 134404
Tssr134405 15 58823471 to 58823482 11 - TSS region transcription start site region 134405
Tssr134406 15 58823566 to 58823581 15 - TSS region transcription start site region 134406
Tssr134407 15 58823584 to 58823602 18 - TSS region transcription start site region 134407
Tssr134408 15 58823610 to 58823621 11 - TSS region transcription start site region 134408
Tssr134409 15 58823631 to 58823643 12 - TSS region transcription start site region 134409
Tssr131347 15 58823772 to 58823783 11 + TSS region transcription start site region 131347
Tssr131348 15 58823820 to 58823825 5 + TSS region transcription start site region 131348
Ube2d4 15 58846590 to 58847321 731 - protein coding gene ubiquitin-conjugating enzyme E2D 4
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045