Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:58393471-59253482

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D15Mit61 15 58394138 to 58394234 96 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 61
Gm2675 15 58405824 to 58411326 5502 + lincRNA gene predicted gene 2675
Tssr131337 15 58405830 to 58405845 15 + TSS region transcription start site region 131337
Cpgi7116 15 58414995 to 58416336 1341 CpG island CpG island 7116
Tssr131338 15 58415456 to 58415512 56 + TSS region transcription start site region 131338
Fam91a1 15 58415468 to 58457740 42272 + protein coding gene family with sequence similarity 91, member A1
Tssr131339 15 58415521 to 58415534 13 + TSS region transcription start site region 131339
Tssr131340 15 58432751 to 58432761 10 + TSS region transcription start site region 131340
Tssr131341 15 58449661 to 58449673 12 + TSS region transcription start site region 131341
Tssr131342 15 58510037 to 58510053 16 + TSS region transcription start site region 131342
Tssr131343 15 58528325 to 58528337 12 + TSS region transcription start site region 131343
Fer1l6 15 58542112 to 58665087 122975 + protein coding gene fer-1-like 6 (C. elegans)
Gm23789 15 58565614 to 58565914 300 + unclassified non-coding RNA gene predicted gene, 23789
Gm36451 15 58589003 to 58597096 8093 - lncRNA gene predicted gene, 36451
Tssr131344 15 58648506 to 58648511 5 + TSS region transcription start site region 131344
Tssr131345 15 58648516 to 58648539 23 + TSS region transcription start site region 131345
Gm41329 15 58759887 to 58763828 3941 + lncRNA gene predicted gene, 41329
Gm20712 15 58780461 to 58781951 1490 - sense overlapping lncRNA gene predicted gene 20712
Tmem65 15 58782269 to 58823638 41369 - protein coding gene transmembrane protein 65
Tssr131346 15 58802783 to 58802794 11 + TSS region transcription start site region 131346
Tssr134402 15 58818128 to 58818133 5 - TSS region transcription start site region 134402
Gm24041 15 58819323 to 58819478 155 - snRNA gene predicted gene, 24041
Cpgi7117 15 58822511 to 58824170 1659 CpG island CpG island 7117
Tssr134403 15 58823407 to 58823459 52 - TSS region transcription start site region 134403
Tssr134404 15 58823465 to 58823468 3 - TSS region transcription start site region 134404
Tssr134405 15 58823471 to 58823482 11 - TSS region transcription start site region 134405
Tssr134406 15 58823566 to 58823581 15 - TSS region transcription start site region 134406
Tssr134407 15 58823584 to 58823602 18 - TSS region transcription start site region 134407
Tssr134408 15 58823610 to 58823621 11 - TSS region transcription start site region 134408
Tssr134409 15 58823631 to 58823643 12 - TSS region transcription start site region 134409
Tssr131347 15 58823772 to 58823783 11 + TSS region transcription start site region 131347
Tssr131348 15 58823820 to 58823825 5 + TSS region transcription start site region 131348
Ube2d4 15 58846590 to 58847321 731 - protein coding gene ubiquitin-conjugating enzyme E2D 4
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045
Gm7691 15 59238489 to 59239002 513 + pseudogene predicted gene 7691