Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:57908309-59958344

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241 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore5 15 40156045 to 58158901 18002856 QTL loss of righting induced by ethanol 5
Cpgi7106 15 57912034 to 57912650 616 CpG island CpG island 7106
Tbc1d31 15 57912199 to 57970067 57868 + protein coding gene TBC1 domain family, member 31
Tssr131322 15 57912224 to 57912278 54 + TSS region transcription start site region 131322
Tssr134373 15 57912902 to 57912917 15 - TSS region transcription start site region 134373
Tssr131323 15 57919234 to 57919255 21 + TSS region transcription start site region 131323
Cpgi7107 15 57923007 to 57923170 163 CpG island CpG island 7107
Tssr131324 15 57975386 to 57975395 9 + TSS region transcription start site region 131324
Cpgi7108 15 57975618 to 57976611 993 CpG island CpG island 7108
Tssr4598 15 57975688 to 57975703 15 - TSS region transcription start site region 4598
n-TMcat16 15 57975983 to 57976055 72 - tRNA gene nuclear encoded tRNA methionine 16 (anticodon CAT)
Tssr131325 15 57976139 to 57976150 11 + TSS region transcription start site region 131325
Tssr131326 15 57976156 to 57976172 16 + TSS region transcription start site region 131326
Fam83a 15 57985419 to 58011009 25590 + protein coding gene family with sequence similarity 83, member A
Tssr131327 15 57985873 to 57985894 21 + TSS region transcription start site region 131327
Tssr131328 15 58002107 to 58002118 11 + TSS region transcription start site region 131328
Cpgi7109 15 58009492 to 58009745 253 CpG island CpG island 7109
Gm46512 15 58013782 to 58015664 1882 - lncRNA gene predicted gene, 46512
9130401M01Rik 15 58022270 to 58034294 12024 - protein coding gene RIKEN cDNA 9130401M01 gene
Gm29394 15 58028243 to 58076425 48182 - protein coding gene predicted gene 29394
Cpgi7110 15 58033822 to 58034528 706 CpG island CpG island 7110
Tssr131329 15 58033944 to 58033967 23 + TSS region transcription start site region 131329
Tssr131330 15 58033968 to 58033987 19 + TSS region transcription start site region 131330
Tssr134374 15 58034208 to 58034224 16 - TSS region transcription start site region 134374
Tssr134375 15 58034276 to 58034287 11 - TSS region transcription start site region 134375
Tssr134376 15 58034289 to 58034298 9 - TSS region transcription start site region 134376
Tssr134377 15 58034308 to 58034335 27 - TSS region transcription start site region 134377
Tssr134378 15 58034336 to 58034349 13 - TSS region transcription start site region 134378
Tssr131331 15 58040369 to 58040380 11 + TSS region transcription start site region 131331
Gm22299 15 58041516 to 58041651 135 - snoRNA gene predicted gene, 22299
Zhx1 15 58047003 to 58076508 29505 - protein coding gene zinc fingers and homeoboxes 1
Cpgi7111 15 58075542 to 58077326 1784 CpG island CpG island 7111
Tssr134379 15 58076192 to 58076243 51 - TSS region transcription start site region 134379
Tssr134380 15 58076436 to 58076455 19 - TSS region transcription start site region 134380
Tssr134381 15 58076456 to 58076515 59 - TSS region transcription start site region 134381
Atad2 15 58094044 to 58135082 41038 - protein coding gene ATPase family, AAA domain containing 2
Tssr134382 15 58112133 to 58112137 4 - TSS region transcription start site region 134382
Tssr134383 15 58113272 to 58113277 5 - TSS region transcription start site region 134383
Tssr134384 15 58119307 to 58119321 14 - TSS region transcription start site region 134384
Tssr134385 15 58119328 to 58119335 7 - TSS region transcription start site region 134385
Tssr134386 15 58119349 to 58119354 5 - TSS region transcription start site region 134386
Gm7552 15 58121069 to 58122161 1092 + pseudogene predicted gene 7552
Tssr134387 15 58125681 to 58125685 4 - TSS region transcription start site region 134387
Tssr134388 15 58132315 to 58132342 27 - TSS region transcription start site region 134388
Cpgi7112 15 58133894 to 58135454 1560 CpG island CpG island 7112
Tssr4599 15 58134991 to 58134998 7 - TSS region transcription start site region 4599
Tssr134389 15 58135001 to 58135012 11 - TSS region transcription start site region 134389
Tssr134390 15 58135047 to 58135095 48 - TSS region transcription start site region 134390
Tssr134391 15 58135111 to 58135122 11 - TSS region transcription start site region 134391
Tssr131332 15 58140928 to 58140967 39 + TSS region transcription start site region 131332
Cpgi7113 15 58141048 to 58142020 972 CpG island CpG island 7113
Tssr131333 15 58141342 to 58141394 52 + TSS region transcription start site region 131333
Wdyhv1 15 58141377 to 58158665 17288 + protein coding gene WDYHV motif containing 1
Tssr131334 15 58141397 to 58141417 20 + TSS region transcription start site region 131334
Tssr131335 15 58141435 to 58141442 7 + TSS region transcription start site region 131335
Gm23475 15 58143208 to 58143269 61 - snRNA gene predicted gene, 23475
Gm22488 15 58146616 to 58146742 126 + snoRNA gene predicted gene, 22488
5430408I23Rik 15 58155874 to 58156613 739 unclassified gene RIKEN cDNA 5430408I23 gene
D15Mit121 15 58158759 to 58158901 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 121
Tssr134392 15 58164826 to 58164865 39 - TSS region transcription start site region 134392
Gm36112 15 58166128 to 58171728 5600 + lncRNA gene predicted gene, 36112
Fbxo32 15 58175879 to 58214892 39013 - protein coding gene F-box protein 32
Tssr134393 15 58182977 to 58182981 4 - TSS region transcription start site region 134393
Tssr134394 15 58191411 to 58191440 29 - TSS region transcription start site region 134394
Cpgi7114 15 58213770 to 58215626 1856 CpG island CpG island 7114
Gm15943 15 58214475 to 58324053 109578 + antisense lncRNA gene predicted gene 15943
Tssr134395 15 58214837 to 58214848 11 - TSS region transcription start site region 134395
Tssr134396 15 58214882 to 58214926 44 - TSS region transcription start site region 134396
Tssr131336 15 58245823 to 58245841 18 + TSS region transcription start site region 131336
Gm36193 15 58245922 to 58253360 7438 + lncRNA gene predicted gene, 36193
Klhl38 15 58314573 to 58324169 9596 - protein coding gene kelch-like 38
Tssr134397 15 58324119 to 58324143 24 - TSS region transcription start site region 134397
Tssr134398 15 58324161 to 58324178 17 - TSS region transcription start site region 134398
Anxa13 15 58341471 to 58389244 47773 - protein coding gene annexin A13
Cpgi7115 15 58352576 to 58352933 357 CpG island CpG island 7115
Tssr134399 15 58352728 to 58352749 21 - TSS region transcription start site region 134399
Tssr134400 15 58352843 to 58352860 17 - TSS region transcription start site region 134400
Tssr134401 15 58389263 to 58389280 17 - TSS region transcription start site region 134401
D15Mit61 15 58394138 to 58394234 96 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 61
Gm2675 15 58405824 to 58411326 5502 + lincRNA gene predicted gene 2675
Tssr131337 15 58405830 to 58405845 15 + TSS region transcription start site region 131337
Cpgi7116 15 58414995 to 58416336 1341 CpG island CpG island 7116
Tssr131338 15 58415456 to 58415512 56 + TSS region transcription start site region 131338
Fam91a1 15 58415468 to 58457740 42272 + protein coding gene family with sequence similarity 91, member A1
Tssr131339 15 58415521 to 58415534 13 + TSS region transcription start site region 131339
Tssr131340 15 58432751 to 58432761 10 + TSS region transcription start site region 131340
Tssr131341 15 58449661 to 58449673 12 + TSS region transcription start site region 131341
Tssr131342 15 58510037 to 58510053 16 + TSS region transcription start site region 131342
Tssr131343 15 58528325 to 58528337 12 + TSS region transcription start site region 131343
Fer1l6 15 58542112 to 58665087 122975 + protein coding gene fer-1-like 6 (C. elegans)
Gm23789 15 58565614 to 58565914 300 + unclassified non-coding RNA gene predicted gene, 23789
Gm36451 15 58589003 to 58597096 8093 - lncRNA gene predicted gene, 36451
Tssr131344 15 58648506 to 58648511 5 + TSS region transcription start site region 131344
Tssr131345 15 58648516 to 58648539 23 + TSS region transcription start site region 131345
Gm41329 15 58759887 to 58763828 3941 + lncRNA gene predicted gene, 41329
Gm20712 15 58780461 to 58781951 1490 - sense overlapping lncRNA gene predicted gene 20712
Tmem65 15 58782269 to 58823638 41369 - protein coding gene transmembrane protein 65
Tssr131346 15 58802783 to 58802794 11 + TSS region transcription start site region 131346
Tssr134402 15 58818128 to 58818133 5 - TSS region transcription start site region 134402
Gm24041 15 58819323 to 58819478 155 - snRNA gene predicted gene, 24041
Cpgi7117 15 58822511 to 58824170 1659 CpG island CpG island 7117
Tssr134403 15 58823407 to 58823459 52 - TSS region transcription start site region 134403
Tssr134404 15 58823465 to 58823468 3 - TSS region transcription start site region 134404
Tssr134405 15 58823471 to 58823482 11 - TSS region transcription start site region 134405
Tssr134406 15 58823566 to 58823581 15 - TSS region transcription start site region 134406
Tssr134407 15 58823584 to 58823602 18 - TSS region transcription start site region 134407
Tssr134408 15 58823610 to 58823621 11 - TSS region transcription start site region 134408
Tssr134409 15 58823631 to 58823643 12 - TSS region transcription start site region 134409
Tssr131347 15 58823772 to 58823783 11 + TSS region transcription start site region 131347
Tssr131348 15 58823820 to 58823825 5 + TSS region transcription start site region 131348
Ube2d4 15 58846590 to 58847321 731 - protein coding gene ubiquitin-conjugating enzyme E2D 4
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1
Tssr131356 15 58899566 to 58899584 18 + TSS region transcription start site region 131356
Gm36559 15 58929672 to 58932032 2360 - lncRNA gene predicted gene, 36559
Tssr134410 15 58929837 to 58929840 3 - TSS region transcription start site region 134410
Tssr134411 15 58933309 to 58933344 35 - TSS region transcription start site region 134411
Cpgi7121 15 58933425 to 58934117 692 CpG island CpG island 7121
Tssr134412 15 58933661 to 58933675 14 - TSS region transcription start site region 134412
Tssr134413 15 58933688 to 58933745 57 - TSS region transcription start site region 134413
Tssr131357 15 58933774 to 58933836 62 + TSS region transcription start site region 131357
Ndufb9 15 58933810 to 58939489 5679 + protein coding gene NADH:ubiquinone oxidoreductase subunit B9
Tssr131358 15 58936421 to 58936432 11 + TSS region transcription start site region 131358
Mtss1 15 58941234 to 59082005 140771 - protein coding gene MTSS I-BAR domain containing 1
Tssr134414 15 58942803 to 58942812 9 - TSS region transcription start site region 134414
Tssr134415 15 58956504 to 58956515 11 - TSS region transcription start site region 134415
Tssr134416 15 58956581 to 58956585 4 - TSS region transcription start site region 134416
4930544F09Rik 15 58984136 to 58988905 4769 + antisense lncRNA gene RIKEN cDNA 4930544F09 gene
Gm41330 15 58988896 to 58996658 7762 - lncRNA gene predicted gene, 41330
Tssr134417 15 59016223 to 59016228 5 - TSS region transcription start site region 134417
Tssr134418 15 59019263 to 59019285 22 - TSS region transcription start site region 134418
Tssr134419 15 59024283 to 59024288 5 - TSS region transcription start site region 134419
Tssr134420 15 59044531 to 59044538 7 - TSS region transcription start site region 134420
Tssr134421 15 59051241 to 59051253 12 - TSS region transcription start site region 134421
Tssr134422 15 59051985 to 59051999 14 - TSS region transcription start site region 134422
Tssr134423 15 59075973 to 59075978 5 - TSS region transcription start site region 134423
Tssr134424 15 59079839 to 59079846 7 - TSS region transcription start site region 134424
Cpgi7122 15 59081009 to 59082707 1698 CpG island CpG island 7122
Tssr134425 15 59081877 to 59081889 12 - TSS region transcription start site region 134425
Tssr134426 15 59081992 to 59082017 25 - TSS region transcription start site region 134426
Tssr134427 15 59082026 to 59082090 64 - TSS region transcription start site region 134427
Tssr134428 15 59082092 to 59082101 9 - TSS region transcription start site region 134428
Tssr134429 15 59082109 to 59082122 13 - TSS region transcription start site region 134429
Tssr134430 15 59082295 to 59082323 28 - TSS region transcription start site region 134430
D15Mit195 15 59190179 to 59190356 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 195
Gm5045 15 59210908 to 59211717 809 + pseudogene predicted gene 5045
Gm7691 15 59238489 to 59239002 513 + pseudogene predicted gene 7691
Tssr134431 15 59269789 to 59269794 5 - TSS region transcription start site region 134431
Tssr134432 15 59270224 to 59270234 10 - TSS region transcription start site region 134432
Tssr134433 15 59273296 to 59273300 4 - TSS region transcription start site region 134433
Tssr134434 15 59275191 to 59275194 3 - TSS region transcription start site region 134434
Tssr134435 15 59275202 to 59275246 44 - TSS region transcription start site region 134435
Tssr131359 15 59275356 to 59275374 18 + TSS region transcription start site region 131359
Tssr131360 15 59275379 to 59275392 13 + TSS region transcription start site region 131360
Tssr4600 15 59275394 to 59275397 3 + TSS region transcription start site region 4600
Gm36617 15 59275396 to 59291946 16550 + lincRNA gene predicted gene, 36617
Tssr131361 15 59275412 to 59275417 5 + TSS region transcription start site region 131361
Tssr131362 15 59302626 to 59302635 9 + TSS region transcription start site region 131362
Cpgi7123 15 59306782 to 59306982 200 CpG island CpG island 7123
Zfp572 15 59306948 to 59312013 5065 + pseudogene zinc finger protein 572
Cpgi7124 15 59314473 to 59315564 1091 CpG island CpG island 7124
Tssr131363 15 59315030 to 59315087 57 + TSS region transcription start site region 131363
Tssr131364 15 59315088 to 59315128 40 + TSS region transcription start site region 131364
Sqle 15 59315092 to 59331193 16101 + protein coding gene squalene epoxidase
Tssr131365 15 59315148 to 59315173 25 + TSS region transcription start site region 131365
Tssr131366 15 59315195 to 59315210 15 + TSS region transcription start site region 131366
Cpgi7125 15 59315891 to 59316059 168 CpG island CpG island 7125
Tssr131367 15 59323609 to 59323645 36 + TSS region transcription start site region 131367
Washc5 15 59331997 to 59374167 42170 - protein coding gene WASH complex subunit 5
Cpgi7126 15 59373805 to 59374484 679 CpG island CpG island 7126
Tssr134436 15 59374133 to 59374144 11 - TSS region transcription start site region 134436
Tssr134437 15 59374149 to 59374199 50 - TSS region transcription start site region 134437
Tssr131368 15 59374231 to 59374279 48 + TSS region transcription start site region 131368
Nsmce2 15 59374247 to 59601684 227437 + protein coding gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
Tssr131369 15 59374289 to 59374302 13 + TSS region transcription start site region 131369
Tssr4601 15 59416622 to 59416640 18 - TSS region transcription start site region 4601
Tssr4602 15 59425129 to 59425132 3 + TSS region transcription start site region 4602
Tssr131370 15 59441038 to 59441043 5 + TSS region transcription start site region 131370
Tssr131371 15 59459775 to 59459814 39 + TSS region transcription start site region 131371
Tssr131372 15 59461996 to 59462023 27 + TSS region transcription start site region 131372
Tssr131373 15 59469389 to 59469392 3 + TSS region transcription start site region 131373
6330417A16Rik 15 59486879 to 59488626 1747 unclassified gene RIKEN cDNA 6330417A16 gene
Tssr131374 15 59489992 to 59490024 32 + TSS region transcription start site region 131374
Tssr131375 15 59494697 to 59494728 31 + TSS region transcription start site region 131375
Tssr131376 15 59522988 to 59522993 5 + TSS region transcription start site region 131376
Tssr134438 15 59524580 to 59524588 8 - TSS region transcription start site region 134438
Tssr134439 15 59524623 to 59524662 39 - TSS region transcription start site region 134439