Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:57807576-58897933

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore5 15 40156045 to 58158901 18002856 QTL loss of righting induced by ethanol 5
Zhx2 15 57694667 to 57839832 145165 + protein coding gene zinc fingers and homeoboxes 2
Tssr131320 15 57839598 to 57839604 6 + TSS region transcription start site region 131320
Derl1 15 57869502 to 57892418 22916 - protein coding gene Der1-like domain family, member 1
Cpgi7105 15 57891791 to 57892823 1032 CpG island CpG island 7105
Tssr134370 15 57892312 to 57892323 11 - TSS region transcription start site region 134370
Tssr134371 15 57892336 to 57892347 11 - TSS region transcription start site region 134371
Tssr134372 15 57892358 to 57892483 125 - TSS region transcription start site region 134372
Tssr131321 15 57892748 to 57892761 13 + TSS region transcription start site region 131321
Cpgi7106 15 57912034 to 57912650 616 CpG island CpG island 7106
Tbc1d31 15 57912199 to 57970067 57868 + protein coding gene TBC1 domain family, member 31
Tssr131322 15 57912224 to 57912278 54 + TSS region transcription start site region 131322
Tssr134373 15 57912902 to 57912917 15 - TSS region transcription start site region 134373
Tssr131323 15 57919234 to 57919255 21 + TSS region transcription start site region 131323
Cpgi7107 15 57923007 to 57923170 163 CpG island CpG island 7107
Tssr131324 15 57975386 to 57975395 9 + TSS region transcription start site region 131324
Cpgi7108 15 57975618 to 57976611 993 CpG island CpG island 7108
Tssr4598 15 57975688 to 57975703 15 - TSS region transcription start site region 4598
n-TMcat16 15 57975983 to 57976055 72 - tRNA gene nuclear encoded tRNA methionine 16 (anticodon CAT)
Tssr131325 15 57976139 to 57976150 11 + TSS region transcription start site region 131325
Tssr131326 15 57976156 to 57976172 16 + TSS region transcription start site region 131326
Fam83a 15 57985419 to 58011009 25590 + protein coding gene family with sequence similarity 83, member A
Tssr131327 15 57985873 to 57985894 21 + TSS region transcription start site region 131327
Tssr131328 15 58002107 to 58002118 11 + TSS region transcription start site region 131328
Cpgi7109 15 58009492 to 58009745 253 CpG island CpG island 7109
Gm46512 15 58013782 to 58015664 1882 - lncRNA gene predicted gene, 46512
9130401M01Rik 15 58022270 to 58034294 12024 - protein coding gene RIKEN cDNA 9130401M01 gene
Gm29394 15 58028243 to 58076425 48182 - protein coding gene predicted gene 29394
Cpgi7110 15 58033822 to 58034528 706 CpG island CpG island 7110
Tssr131329 15 58033944 to 58033967 23 + TSS region transcription start site region 131329
Tssr131330 15 58033968 to 58033987 19 + TSS region transcription start site region 131330
Tssr134374 15 58034208 to 58034224 16 - TSS region transcription start site region 134374
Tssr134375 15 58034276 to 58034287 11 - TSS region transcription start site region 134375
Tssr134376 15 58034289 to 58034298 9 - TSS region transcription start site region 134376
Tssr134377 15 58034308 to 58034335 27 - TSS region transcription start site region 134377
Tssr134378 15 58034336 to 58034349 13 - TSS region transcription start site region 134378
Tssr131331 15 58040369 to 58040380 11 + TSS region transcription start site region 131331
Gm22299 15 58041516 to 58041651 135 - snoRNA gene predicted gene, 22299
Zhx1 15 58047003 to 58076508 29505 - protein coding gene zinc fingers and homeoboxes 1
Cpgi7111 15 58075542 to 58077326 1784 CpG island CpG island 7111
Tssr134379 15 58076192 to 58076243 51 - TSS region transcription start site region 134379
Tssr134380 15 58076436 to 58076455 19 - TSS region transcription start site region 134380
Tssr134381 15 58076456 to 58076515 59 - TSS region transcription start site region 134381
Atad2 15 58094044 to 58135082 41038 - protein coding gene ATPase family, AAA domain containing 2
Tssr134382 15 58112133 to 58112137 4 - TSS region transcription start site region 134382
Tssr134383 15 58113272 to 58113277 5 - TSS region transcription start site region 134383
Tssr134384 15 58119307 to 58119321 14 - TSS region transcription start site region 134384
Tssr134385 15 58119328 to 58119335 7 - TSS region transcription start site region 134385
Tssr134386 15 58119349 to 58119354 5 - TSS region transcription start site region 134386
Gm7552 15 58121069 to 58122161 1092 + pseudogene predicted gene 7552
Tssr134387 15 58125681 to 58125685 4 - TSS region transcription start site region 134387
Tssr134388 15 58132315 to 58132342 27 - TSS region transcription start site region 134388
Cpgi7112 15 58133894 to 58135454 1560 CpG island CpG island 7112
Tssr4599 15 58134991 to 58134998 7 - TSS region transcription start site region 4599
Tssr134389 15 58135001 to 58135012 11 - TSS region transcription start site region 134389
Tssr134390 15 58135047 to 58135095 48 - TSS region transcription start site region 134390
Tssr134391 15 58135111 to 58135122 11 - TSS region transcription start site region 134391
Tssr131332 15 58140928 to 58140967 39 + TSS region transcription start site region 131332
Cpgi7113 15 58141048 to 58142020 972 CpG island CpG island 7113
Tssr131333 15 58141342 to 58141394 52 + TSS region transcription start site region 131333
Wdyhv1 15 58141377 to 58158665 17288 + protein coding gene WDYHV motif containing 1
Tssr131334 15 58141397 to 58141417 20 + TSS region transcription start site region 131334
Tssr131335 15 58141435 to 58141442 7 + TSS region transcription start site region 131335
Gm23475 15 58143208 to 58143269 61 - snRNA gene predicted gene, 23475
Gm22488 15 58146616 to 58146742 126 + snoRNA gene predicted gene, 22488
5430408I23Rik 15 58155874 to 58156613 739 unclassified gene RIKEN cDNA 5430408I23 gene
D15Mit121 15 58158759 to 58158901 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 121
Tssr134392 15 58164826 to 58164865 39 - TSS region transcription start site region 134392
Gm36112 15 58166128 to 58171728 5600 + lncRNA gene predicted gene, 36112
Fbxo32 15 58175879 to 58214892 39013 - protein coding gene F-box protein 32
Tssr134393 15 58182977 to 58182981 4 - TSS region transcription start site region 134393
Tssr134394 15 58191411 to 58191440 29 - TSS region transcription start site region 134394
Cpgi7114 15 58213770 to 58215626 1856 CpG island CpG island 7114
Gm15943 15 58214475 to 58324053 109578 + antisense lncRNA gene predicted gene 15943
Tssr134395 15 58214837 to 58214848 11 - TSS region transcription start site region 134395
Tssr134396 15 58214882 to 58214926 44 - TSS region transcription start site region 134396
Tssr131336 15 58245823 to 58245841 18 + TSS region transcription start site region 131336
Gm36193 15 58245922 to 58253360 7438 + lncRNA gene predicted gene, 36193
Klhl38 15 58314573 to 58324169 9596 - protein coding gene kelch-like 38
Tssr134397 15 58324119 to 58324143 24 - TSS region transcription start site region 134397
Tssr134398 15 58324161 to 58324178 17 - TSS region transcription start site region 134398
Anxa13 15 58341471 to 58389244 47773 - protein coding gene annexin A13
Cpgi7115 15 58352576 to 58352933 357 CpG island CpG island 7115
Tssr134399 15 58352728 to 58352749 21 - TSS region transcription start site region 134399
Tssr134400 15 58352843 to 58352860 17 - TSS region transcription start site region 134400
Tssr134401 15 58389263 to 58389280 17 - TSS region transcription start site region 134401
D15Mit61 15 58394138 to 58394234 96 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 61
Gm2675 15 58405824 to 58411326 5502 + lincRNA gene predicted gene 2675
Tssr131337 15 58405830 to 58405845 15 + TSS region transcription start site region 131337
Cpgi7116 15 58414995 to 58416336 1341 CpG island CpG island 7116
Tssr131338 15 58415456 to 58415512 56 + TSS region transcription start site region 131338
Fam91a1 15 58415468 to 58457740 42272 + protein coding gene family with sequence similarity 91, member A1
Tssr131339 15 58415521 to 58415534 13 + TSS region transcription start site region 131339
Tssr131340 15 58432751 to 58432761 10 + TSS region transcription start site region 131340
Tssr131341 15 58449661 to 58449673 12 + TSS region transcription start site region 131341
Tssr131342 15 58510037 to 58510053 16 + TSS region transcription start site region 131342
Tssr131343 15 58528325 to 58528337 12 + TSS region transcription start site region 131343
Fer1l6 15 58542112 to 58665087 122975 + protein coding gene fer-1-like 6 (C. elegans)
Gm23789 15 58565614 to 58565914 300 + unclassified non-coding RNA gene predicted gene, 23789
Gm36451 15 58589003 to 58597096 8093 - lncRNA gene predicted gene, 36451
Tssr131344 15 58648506 to 58648511 5 + TSS region transcription start site region 131344
Tssr131345 15 58648516 to 58648539 23 + TSS region transcription start site region 131345
Gm41329 15 58759887 to 58763828 3941 + lncRNA gene predicted gene, 41329
Gm20712 15 58780461 to 58781951 1490 - sense overlapping lncRNA gene predicted gene 20712
Tmem65 15 58782269 to 58823638 41369 - protein coding gene transmembrane protein 65
Tssr131346 15 58802783 to 58802794 11 + TSS region transcription start site region 131346
Tssr134402 15 58818128 to 58818133 5 - TSS region transcription start site region 134402
Gm24041 15 58819323 to 58819478 155 - snRNA gene predicted gene, 24041
Cpgi7117 15 58822511 to 58824170 1659 CpG island CpG island 7117
Tssr134403 15 58823407 to 58823459 52 - TSS region transcription start site region 134403
Tssr134404 15 58823465 to 58823468 3 - TSS region transcription start site region 134404
Tssr134405 15 58823471 to 58823482 11 - TSS region transcription start site region 134405
Tssr134406 15 58823566 to 58823581 15 - TSS region transcription start site region 134406
Tssr134407 15 58823584 to 58823602 18 - TSS region transcription start site region 134407
Tssr134408 15 58823610 to 58823621 11 - TSS region transcription start site region 134408
Tssr134409 15 58823631 to 58823643 12 - TSS region transcription start site region 134409
Tssr131347 15 58823772 to 58823783 11 + TSS region transcription start site region 131347
Tssr131348 15 58823820 to 58823825 5 + TSS region transcription start site region 131348
Ube2d4 15 58846590 to 58847321 731 - protein coding gene ubiquitin-conjugating enzyme E2D 4
Cpgi7118 15 58853254 to 58853539 285 CpG island CpG island 7118
Cpgi7119 15 58872555 to 58873455 900 CpG island CpG island 7119
Tssr131349 15 58872646 to 58872696 50 + TSS region transcription start site region 131349
Trmt12 15 58872649 to 58876781 4132 + protein coding gene tRNA methyltranferase 12
Gm36509 15 58882623 to 58886595 3972 + lncRNA gene predicted gene, 36509
Cpgi7120 15 58888451 to 58889871 1420 CpG island CpG island 7120
Tssr131350 15 58888920 to 58888969 49 + TSS region transcription start site region 131350
Tssr131351 15 58888973 to 58889010 37 + TSS region transcription start site region 131351
Tssr131352 15 58889014 to 58889028 14 + TSS region transcription start site region 131352
Tssr131353 15 58889071 to 58889151 80 + TSS region transcription start site region 131353
Tssr131354 15 58889208 to 58889231 23 + TSS region transcription start site region 131354
Rnf139 15 58889229 to 58902390 13161 + protein coding gene ring finger protein 139
Tssr131355 15 58889269 to 58889311 42 + TSS region transcription start site region 131355
Gm49356 15 58889298 to 58937359 48061 + protein coding gene predicted gene, 49356
Tatdn1 15 58890155 to 58933738 43583 - protein coding gene TatD DNase domain containing 1