Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:57796156-58156172

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zhx2 15 57694667 to 57839832 145165 + protein coding gene zinc fingers and homeoboxes 2
Tssr131320 15 57839598 to 57839604 6 + TSS region transcription start site region 131320
Derl1 15 57869502 to 57892418 22916 - protein coding gene Der1-like domain family, member 1
Cpgi7105 15 57891791 to 57892823 1032 CpG island CpG island 7105
Tssr134370 15 57892312 to 57892323 11 - TSS region transcription start site region 134370
Tssr134371 15 57892336 to 57892347 11 - TSS region transcription start site region 134371
Tssr134372 15 57892358 to 57892483 125 - TSS region transcription start site region 134372
Tssr131321 15 57892748 to 57892761 13 + TSS region transcription start site region 131321
Cpgi7106 15 57912034 to 57912650 616 CpG island CpG island 7106
Tbc1d31 15 57912199 to 57970067 57868 + protein coding gene TBC1 domain family, member 31
Tssr131322 15 57912224 to 57912278 54 + TSS region transcription start site region 131322
Tssr134373 15 57912902 to 57912917 15 - TSS region transcription start site region 134373
Tssr131323 15 57919234 to 57919255 21 + TSS region transcription start site region 131323
Cpgi7107 15 57923007 to 57923170 163 CpG island CpG island 7107
Tssr131324 15 57975386 to 57975395 9 + TSS region transcription start site region 131324
Cpgi7108 15 57975618 to 57976611 993 CpG island CpG island 7108
Tssr4598 15 57975688 to 57975703 15 - TSS region transcription start site region 4598
n-TMcat16 15 57975983 to 57976055 72 - tRNA gene nuclear encoded tRNA methionine 16 (anticodon CAT)
Tssr131325 15 57976139 to 57976150 11 + TSS region transcription start site region 131325
Tssr131326 15 57976156 to 57976172 16 + TSS region transcription start site region 131326
Fam83a 15 57985419 to 58011009 25590 + protein coding gene family with sequence similarity 83, member A
Tssr131327 15 57985873 to 57985894 21 + TSS region transcription start site region 131327
Tssr131328 15 58002107 to 58002118 11 + TSS region transcription start site region 131328
Cpgi7109 15 58009492 to 58009745 253 CpG island CpG island 7109
Gm46512 15 58013782 to 58015664 1882 - lncRNA gene predicted gene, 46512
9130401M01Rik 15 58022270 to 58034294 12024 - protein coding gene RIKEN cDNA 9130401M01 gene
Gm29394 15 58028243 to 58076425 48182 - protein coding gene predicted gene 29394
Cpgi7110 15 58033822 to 58034528 706 CpG island CpG island 7110
Tssr131329 15 58033944 to 58033967 23 + TSS region transcription start site region 131329
Tssr131330 15 58033968 to 58033987 19 + TSS region transcription start site region 131330
Tssr134374 15 58034208 to 58034224 16 - TSS region transcription start site region 134374
Tssr134375 15 58034276 to 58034287 11 - TSS region transcription start site region 134375
Tssr134376 15 58034289 to 58034298 9 - TSS region transcription start site region 134376
Tssr134377 15 58034308 to 58034335 27 - TSS region transcription start site region 134377
Tssr134378 15 58034336 to 58034349 13 - TSS region transcription start site region 134378
Tssr131331 15 58040369 to 58040380 11 + TSS region transcription start site region 131331
Gm22299 15 58041516 to 58041651 135 - snoRNA gene predicted gene, 22299
Zhx1 15 58047003 to 58076508 29505 - protein coding gene zinc fingers and homeoboxes 1
Cpgi7111 15 58075542 to 58077326 1784 CpG island CpG island 7111
Tssr134379 15 58076192 to 58076243 51 - TSS region transcription start site region 134379
Tssr134380 15 58076436 to 58076455 19 - TSS region transcription start site region 134380
Tssr134381 15 58076456 to 58076515 59 - TSS region transcription start site region 134381
Atad2 15 58094044 to 58135082 41038 - protein coding gene ATPase family, AAA domain containing 2
Tssr134382 15 58112133 to 58112137 4 - TSS region transcription start site region 134382
Tssr134383 15 58113272 to 58113277 5 - TSS region transcription start site region 134383
Tssr134384 15 58119307 to 58119321 14 - TSS region transcription start site region 134384
Tssr134385 15 58119328 to 58119335 7 - TSS region transcription start site region 134385
Tssr134386 15 58119349 to 58119354 5 - TSS region transcription start site region 134386
Gm7552 15 58121069 to 58122161 1092 + pseudogene predicted gene 7552
Tssr134387 15 58125681 to 58125685 4 - TSS region transcription start site region 134387
Tssr134388 15 58132315 to 58132342 27 - TSS region transcription start site region 134388
Cpgi7112 15 58133894 to 58135454 1560 CpG island CpG island 7112
Tssr4599 15 58134991 to 58134998 7 - TSS region transcription start site region 4599
Tssr134389 15 58135001 to 58135012 11 - TSS region transcription start site region 134389
Tssr134390 15 58135047 to 58135095 48 - TSS region transcription start site region 134390
Tssr134391 15 58135111 to 58135122 11 - TSS region transcription start site region 134391
Tssr131332 15 58140928 to 58140967 39 + TSS region transcription start site region 131332
Cpgi7113 15 58141048 to 58142020 972 CpG island CpG island 7113
Tssr131333 15 58141342 to 58141394 52 + TSS region transcription start site region 131333
Wdyhv1 15 58141377 to 58158665 17288 + protein coding gene WDYHV motif containing 1
Tssr131334 15 58141397 to 58141417 20 + TSS region transcription start site region 131334
Tssr131335 15 58141435 to 58141442 7 + TSS region transcription start site region 131335
Gm23475 15 58143208 to 58143269 61 - snRNA gene predicted gene, 23475
Gm22488 15 58146616 to 58146742 126 + snoRNA gene predicted gene, 22488
5430408I23Rik 15 58155874 to 58156613 739 unclassified gene RIKEN cDNA 5430408I23 gene