Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:56329007-58149113

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41326 15 56410155 to 56435878 25723 + lncRNA gene predicted gene, 41326
Gm49213 15 56415013 to 56415226 213 + pseudogene predicted gene, 49213
Tssr134358 15 56429232 to 56429233 1 - TSS region transcription start site region 134358
Has2 15 56665627 to 56694539 28912 - protein coding gene hyaluronan synthase 2
Has2os 15 56689944 to 56694460 4516 + lncRNA gene hyaluronan synthase 2, opposite strand
Cpgi7103 15 56692777 to 56693514 737 CpG island CpG island 7103
Tssr134359 15 56694509 to 56694523 14 - TSS region transcription start site region 134359
Tssr134360 15 56694525 to 56694554 29 - TSS region transcription start site region 134360
Tssr134361 15 56694579 to 56694603 24 - TSS region transcription start site region 134361
Tssr131308 15 56695483 to 56695485 2 + TSS region transcription start site region 131308
Gm41327 15 56758362 to 56776362 18000 + lncRNA gene predicted gene, 41327
Gm38516 15 56765401 to 56768626 3225 + lncRNA gene predicted gene, 38516
Gm5673 15 56782642 to 56783428 786 - pseudogene predicted gene 5673
Gm2582 15 56880409 to 57006624 126215 - lincRNA gene predicted gene 2582
D15Mit278 15 57168342 to 57168620 278 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-278
Gm26178 15 57239007 to 57239113 106 - snRNA gene predicted gene, 26178
Slc22a22 15 57243767 to 57477625 233858 - protein coding gene solute carrier family 22 (organic cation transporter), member 22
Tssr134362 15 57265126 to 57265150 24 - TSS region transcription start site region 134362
Tssr4597 15 57347684 to 57347695 11 + TSS region transcription start site region 4597
Gm49229 15 57347749 to 57348090 341 + pseudogene predicted gene, 49229
Gm18094 15 57429984 to 57430713 729 + pseudogene predicted gene, 18094
Gm49235 15 57487947 to 57488871 924 - pseudogene predicted gene, 49235
Gm35627 15 57516100 to 57518262 2162 - lncRNA gene predicted gene, 35627
Gm41328 15 57522591 to 57546495 23904 - lncRNA gene predicted gene, 41328
Gm35682 15 57578749 to 57660115 81366 - lncRNA gene predicted gene, 35682
Gm35771 15 57578930 to 57592827 13897 + lncRNA gene predicted gene, 35771
Tssr134363 15 57660051 to 57660058 7 - TSS region transcription start site region 134363
D15Dcr1 15 57684865 to 57684960 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 1
Cpgi7104 15 57693090 to 57696301 3211 CpG island CpG island 7104
Tssr134364 15 57693770 to 57693783 13 - TSS region transcription start site region 134364
Tssr131309 15 57694101 to 57694117 16 + TSS region transcription start site region 131309
Tssr131310 15 57694651 to 57694686 35 + TSS region transcription start site region 131310
Zhx2 15 57694667 to 57839832 145165 + protein coding gene zinc fingers and homeoboxes 2
Tssr131311 15 57694761 to 57694777 16 + TSS region transcription start site region 131311
Tssr131312 15 57694790 to 57694837 47 + TSS region transcription start site region 131312
Tssr131313 15 57694839 to 57694849 10 + TSS region transcription start site region 131313
Tssr131314 15 57694860 to 57694870 10 + TSS region transcription start site region 131314
Tssr131315 15 57694914 to 57694979 65 + TSS region transcription start site region 131315
Tssr131316 15 57695217 to 57695221 4 + TSS region transcription start site region 131316
Tssr134365 15 57695340 to 57695376 36 - TSS region transcription start site region 134365
Tssr134366 15 57695544 to 57695560 16 - TSS region transcription start site region 134366
Tssr131317 15 57695662 to 57695685 23 + TSS region transcription start site region 131317
Tssr131318 15 57695690 to 57695702 12 + TSS region transcription start site region 131318
Tssr134367 15 57696094 to 57696115 21 - TSS region transcription start site region 134367
Gm16006 15 57708114 to 57708927 813 - antisense lncRNA gene predicted gene 16006
Tssr134368 15 57708921 to 57708936 15 - TSS region transcription start site region 134368
9330154K18Rik 15 57736563 to 57738666 2103 - antisense lncRNA gene RIKEN cDNA 9330154K18 gene
Tssr134369 15 57772831 to 57772842 11 - TSS region transcription start site region 134369
Tssr131319 15 57777312 to 57777315 3 + TSS region transcription start site region 131319
Tssr131320 15 57839598 to 57839604 6 + TSS region transcription start site region 131320
Derl1 15 57869502 to 57892418 22916 - protein coding gene Der1-like domain family, member 1
Cpgi7105 15 57891791 to 57892823 1032 CpG island CpG island 7105
Tssr134370 15 57892312 to 57892323 11 - TSS region transcription start site region 134370
Tssr134371 15 57892336 to 57892347 11 - TSS region transcription start site region 134371
Tssr134372 15 57892358 to 57892483 125 - TSS region transcription start site region 134372
Tssr131321 15 57892748 to 57892761 13 + TSS region transcription start site region 131321
Cpgi7106 15 57912034 to 57912650 616 CpG island CpG island 7106
Tbc1d31 15 57912199 to 57970067 57868 + protein coding gene TBC1 domain family, member 31
Tssr131322 15 57912224 to 57912278 54 + TSS region transcription start site region 131322
Tssr134373 15 57912902 to 57912917 15 - TSS region transcription start site region 134373
Tssr131323 15 57919234 to 57919255 21 + TSS region transcription start site region 131323
Cpgi7107 15 57923007 to 57923170 163 CpG island CpG island 7107
Tssr131324 15 57975386 to 57975395 9 + TSS region transcription start site region 131324
Cpgi7108 15 57975618 to 57976611 993 CpG island CpG island 7108
Tssr4598 15 57975688 to 57975703 15 - TSS region transcription start site region 4598
n-TMcat16 15 57975983 to 57976055 72 - tRNA gene nuclear encoded tRNA methionine 16 (anticodon CAT)
Tssr131325 15 57976139 to 57976150 11 + TSS region transcription start site region 131325
Tssr131326 15 57976156 to 57976172 16 + TSS region transcription start site region 131326
Fam83a 15 57985419 to 58011009 25590 + protein coding gene family with sequence similarity 83, member A
Tssr131327 15 57985873 to 57985894 21 + TSS region transcription start site region 131327
Tssr131328 15 58002107 to 58002118 11 + TSS region transcription start site region 131328
Cpgi7109 15 58009492 to 58009745 253 CpG island CpG island 7109
Gm46512 15 58013782 to 58015664 1882 - lncRNA gene predicted gene, 46512
9130401M01Rik 15 58022270 to 58034294 12024 - protein coding gene RIKEN cDNA 9130401M01 gene
Gm29394 15 58028243 to 58076425 48182 - protein coding gene predicted gene 29394
Cpgi7110 15 58033822 to 58034528 706 CpG island CpG island 7110
Tssr131329 15 58033944 to 58033967 23 + TSS region transcription start site region 131329
Tssr131330 15 58033968 to 58033987 19 + TSS region transcription start site region 131330
Tssr134374 15 58034208 to 58034224 16 - TSS region transcription start site region 134374
Tssr134375 15 58034276 to 58034287 11 - TSS region transcription start site region 134375
Tssr134376 15 58034289 to 58034298 9 - TSS region transcription start site region 134376
Tssr134377 15 58034308 to 58034335 27 - TSS region transcription start site region 134377
Tssr134378 15 58034336 to 58034349 13 - TSS region transcription start site region 134378
Tssr131331 15 58040369 to 58040380 11 + TSS region transcription start site region 131331
Gm22299 15 58041516 to 58041651 135 - snoRNA gene predicted gene, 22299
Zhx1 15 58047003 to 58076508 29505 - protein coding gene zinc fingers and homeoboxes 1
Cpgi7111 15 58075542 to 58077326 1784 CpG island CpG island 7111
Tssr134379 15 58076192 to 58076243 51 - TSS region transcription start site region 134379
Tssr134380 15 58076436 to 58076455 19 - TSS region transcription start site region 134380
Tssr134381 15 58076456 to 58076515 59 - TSS region transcription start site region 134381
Atad2 15 58094044 to 58135082 41038 - protein coding gene ATPase family, AAA domain containing 2
Tssr134382 15 58112133 to 58112137 4 - TSS region transcription start site region 134382
Tssr134383 15 58113272 to 58113277 5 - TSS region transcription start site region 134383
Tssr134384 15 58119307 to 58119321 14 - TSS region transcription start site region 134384
Tssr134385 15 58119328 to 58119335 7 - TSS region transcription start site region 134385
Tssr134386 15 58119349 to 58119354 5 - TSS region transcription start site region 134386
Gm7552 15 58121069 to 58122161 1092 + pseudogene predicted gene 7552
Tssr134387 15 58125681 to 58125685 4 - TSS region transcription start site region 134387
Tssr134388 15 58132315 to 58132342 27 - TSS region transcription start site region 134388
Cpgi7112 15 58133894 to 58135454 1560 CpG island CpG island 7112
Tssr4599 15 58134991 to 58134998 7 - TSS region transcription start site region 4599
Tssr134389 15 58135001 to 58135012 11 - TSS region transcription start site region 134389
Tssr134390 15 58135047 to 58135095 48 - TSS region transcription start site region 134390
Tssr134391 15 58135111 to 58135122 11 - TSS region transcription start site region 134391
Tssr131332 15 58140928 to 58140967 39 + TSS region transcription start site region 131332
Cpgi7113 15 58141048 to 58142020 972 CpG island CpG island 7113
Tssr131333 15 58141342 to 58141394 52 + TSS region transcription start site region 131333
Wdyhv1 15 58141377 to 58158665 17288 + protein coding gene WDYHV motif containing 1
Tssr131334 15 58141397 to 58141417 20 + TSS region transcription start site region 131334
Tssr131335 15 58141435 to 58141442 7 + TSS region transcription start site region 131335
Gm23475 15 58143208 to 58143269 61 - snRNA gene predicted gene, 23475
Gm22488 15 58146616 to 58146742 126 + snoRNA gene predicted gene, 22488