Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:56104007-58374113

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore5 15 40156045 to 58158901 18002856 QTL loss of righting induced by ethanol 5
Hba-ps3 15 56171988 to 56172389 401 - pseudogene hemoglobin alpha, pseudogene 3
Tssr134356 15 56172113 to 56172141 28 - TSS region transcription start site region 134356
Tssr134357 15 56172416 to 56172425 9 - TSS region transcription start site region 134357
Hrq2 15 56236999 to 56237197 198 QTL heart rate QTL 2
D15Mit184 15 56236999 to 56237197 198 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 184
D15Mit115 15 56323312 to 56323454 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 115
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Gm41326 15 56410155 to 56435878 25723 + lncRNA gene predicted gene, 41326
Gm49213 15 56415013 to 56415226 213 + pseudogene predicted gene, 49213
Tssr134358 15 56429232 to 56429233 1 - TSS region transcription start site region 134358
Has2 15 56665627 to 56694539 28912 - protein coding gene hyaluronan synthase 2
Has2os 15 56689944 to 56694460 4516 + lncRNA gene hyaluronan synthase 2, opposite strand
Cpgi7103 15 56692777 to 56693514 737 CpG island CpG island 7103
Tssr134359 15 56694509 to 56694523 14 - TSS region transcription start site region 134359
Tssr134360 15 56694525 to 56694554 29 - TSS region transcription start site region 134360
Tssr134361 15 56694579 to 56694603 24 - TSS region transcription start site region 134361
Tssr131308 15 56695483 to 56695485 2 + TSS region transcription start site region 131308
Gm41327 15 56758362 to 56776362 18000 + lncRNA gene predicted gene, 41327
Gm38516 15 56765401 to 56768626 3225 + lncRNA gene predicted gene, 38516
Gm5673 15 56782642 to 56783428 786 - pseudogene predicted gene 5673
Gm2582 15 56880409 to 57006624 126215 - lincRNA gene predicted gene 2582
D15Mit278 15 57168342 to 57168620 278 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-278
Gm26178 15 57239007 to 57239113 106 - snRNA gene predicted gene, 26178
Slc22a22 15 57243767 to 57477625 233858 - protein coding gene solute carrier family 22 (organic cation transporter), member 22
Tssr134362 15 57265126 to 57265150 24 - TSS region transcription start site region 134362
Tssr4597 15 57347684 to 57347695 11 + TSS region transcription start site region 4597
Gm49229 15 57347749 to 57348090 341 + pseudogene predicted gene, 49229
Gm18094 15 57429984 to 57430713 729 + pseudogene predicted gene, 18094
Gm49235 15 57487947 to 57488871 924 - pseudogene predicted gene, 49235
Gm35627 15 57516100 to 57518262 2162 - lncRNA gene predicted gene, 35627
Gm41328 15 57522591 to 57546495 23904 - lncRNA gene predicted gene, 41328
Gm35682 15 57578749 to 57660115 81366 - lncRNA gene predicted gene, 35682
Gm35771 15 57578930 to 57592827 13897 + lncRNA gene predicted gene, 35771
Tssr134363 15 57660051 to 57660058 7 - TSS region transcription start site region 134363
D15Dcr1 15 57684865 to 57684960 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 1
Cpgi7104 15 57693090 to 57696301 3211 CpG island CpG island 7104
Tssr134364 15 57693770 to 57693783 13 - TSS region transcription start site region 134364
Tssr131309 15 57694101 to 57694117 16 + TSS region transcription start site region 131309
Tssr131310 15 57694651 to 57694686 35 + TSS region transcription start site region 131310
Zhx2 15 57694667 to 57839832 145165 + protein coding gene zinc fingers and homeoboxes 2
Tssr131311 15 57694761 to 57694777 16 + TSS region transcription start site region 131311
Tssr131312 15 57694790 to 57694837 47 + TSS region transcription start site region 131312
Tssr131313 15 57694839 to 57694849 10 + TSS region transcription start site region 131313
Tssr131314 15 57694860 to 57694870 10 + TSS region transcription start site region 131314
Tssr131315 15 57694914 to 57694979 65 + TSS region transcription start site region 131315
Tssr131316 15 57695217 to 57695221 4 + TSS region transcription start site region 131316
Tssr134365 15 57695340 to 57695376 36 - TSS region transcription start site region 134365
Tssr134366 15 57695544 to 57695560 16 - TSS region transcription start site region 134366
Tssr131317 15 57695662 to 57695685 23 + TSS region transcription start site region 131317
Tssr131318 15 57695690 to 57695702 12 + TSS region transcription start site region 131318
Tssr134367 15 57696094 to 57696115 21 - TSS region transcription start site region 134367
Gm16006 15 57708114 to 57708927 813 - antisense lncRNA gene predicted gene 16006
Tssr134368 15 57708921 to 57708936 15 - TSS region transcription start site region 134368
9330154K18Rik 15 57736563 to 57738666 2103 - antisense lncRNA gene RIKEN cDNA 9330154K18 gene
Tssr134369 15 57772831 to 57772842 11 - TSS region transcription start site region 134369
Tssr131319 15 57777312 to 57777315 3 + TSS region transcription start site region 131319
Tssr131320 15 57839598 to 57839604 6 + TSS region transcription start site region 131320
Derl1 15 57869502 to 57892418 22916 - protein coding gene Der1-like domain family, member 1
Cpgi7105 15 57891791 to 57892823 1032 CpG island CpG island 7105
Tssr134370 15 57892312 to 57892323 11 - TSS region transcription start site region 134370
Tssr134371 15 57892336 to 57892347 11 - TSS region transcription start site region 134371
Tssr134372 15 57892358 to 57892483 125 - TSS region transcription start site region 134372
Tssr131321 15 57892748 to 57892761 13 + TSS region transcription start site region 131321
Cpgi7106 15 57912034 to 57912650 616 CpG island CpG island 7106
Tbc1d31 15 57912199 to 57970067 57868 + protein coding gene TBC1 domain family, member 31
Tssr131322 15 57912224 to 57912278 54 + TSS region transcription start site region 131322
Tssr134373 15 57912902 to 57912917 15 - TSS region transcription start site region 134373
Tssr131323 15 57919234 to 57919255 21 + TSS region transcription start site region 131323
Cpgi7107 15 57923007 to 57923170 163 CpG island CpG island 7107
Tssr131324 15 57975386 to 57975395 9 + TSS region transcription start site region 131324
Cpgi7108 15 57975618 to 57976611 993 CpG island CpG island 7108
Tssr4598 15 57975688 to 57975703 15 - TSS region transcription start site region 4598
n-TMcat16 15 57975983 to 57976055 72 - tRNA gene nuclear encoded tRNA methionine 16 (anticodon CAT)
Tssr131325 15 57976139 to 57976150 11 + TSS region transcription start site region 131325
Tssr131326 15 57976156 to 57976172 16 + TSS region transcription start site region 131326
Fam83a 15 57985419 to 58011009 25590 + protein coding gene family with sequence similarity 83, member A
Tssr131327 15 57985873 to 57985894 21 + TSS region transcription start site region 131327
Tssr131328 15 58002107 to 58002118 11 + TSS region transcription start site region 131328
Cpgi7109 15 58009492 to 58009745 253 CpG island CpG island 7109
Gm46512 15 58013782 to 58015664 1882 - lncRNA gene predicted gene, 46512
9130401M01Rik 15 58022270 to 58034294 12024 - protein coding gene RIKEN cDNA 9130401M01 gene
Gm29394 15 58028243 to 58076425 48182 - protein coding gene predicted gene 29394
Cpgi7110 15 58033822 to 58034528 706 CpG island CpG island 7110
Tssr131329 15 58033944 to 58033967 23 + TSS region transcription start site region 131329
Tssr131330 15 58033968 to 58033987 19 + TSS region transcription start site region 131330
Tssr134374 15 58034208 to 58034224 16 - TSS region transcription start site region 134374
Tssr134375 15 58034276 to 58034287 11 - TSS region transcription start site region 134375
Tssr134376 15 58034289 to 58034298 9 - TSS region transcription start site region 134376
Tssr134377 15 58034308 to 58034335 27 - TSS region transcription start site region 134377
Tssr134378 15 58034336 to 58034349 13 - TSS region transcription start site region 134378
Tssr131331 15 58040369 to 58040380 11 + TSS region transcription start site region 131331
Gm22299 15 58041516 to 58041651 135 - snoRNA gene predicted gene, 22299
Zhx1 15 58047003 to 58076508 29505 - protein coding gene zinc fingers and homeoboxes 1
Cpgi7111 15 58075542 to 58077326 1784 CpG island CpG island 7111
Tssr134379 15 58076192 to 58076243 51 - TSS region transcription start site region 134379
Tssr134380 15 58076436 to 58076455 19 - TSS region transcription start site region 134380
Tssr134381 15 58076456 to 58076515 59 - TSS region transcription start site region 134381
Atad2 15 58094044 to 58135082 41038 - protein coding gene ATPase family, AAA domain containing 2
Tssr134382 15 58112133 to 58112137 4 - TSS region transcription start site region 134382
Tssr134383 15 58113272 to 58113277 5 - TSS region transcription start site region 134383
Tssr134384 15 58119307 to 58119321 14 - TSS region transcription start site region 134384
Tssr134385 15 58119328 to 58119335 7 - TSS region transcription start site region 134385
Tssr134386 15 58119349 to 58119354 5 - TSS region transcription start site region 134386
Gm7552 15 58121069 to 58122161 1092 + pseudogene predicted gene 7552
Tssr134387 15 58125681 to 58125685 4 - TSS region transcription start site region 134387
Tssr134388 15 58132315 to 58132342 27 - TSS region transcription start site region 134388
Cpgi7112 15 58133894 to 58135454 1560 CpG island CpG island 7112
Tssr4599 15 58134991 to 58134998 7 - TSS region transcription start site region 4599
Tssr134389 15 58135001 to 58135012 11 - TSS region transcription start site region 134389
Tssr134390 15 58135047 to 58135095 48 - TSS region transcription start site region 134390
Tssr134391 15 58135111 to 58135122 11 - TSS region transcription start site region 134391
Tssr131332 15 58140928 to 58140967 39 + TSS region transcription start site region 131332
Cpgi7113 15 58141048 to 58142020 972 CpG island CpG island 7113
Tssr131333 15 58141342 to 58141394 52 + TSS region transcription start site region 131333
Wdyhv1 15 58141377 to 58158665 17288 + protein coding gene WDYHV motif containing 1
Tssr131334 15 58141397 to 58141417 20 + TSS region transcription start site region 131334
Tssr131335 15 58141435 to 58141442 7 + TSS region transcription start site region 131335
Gm23475 15 58143208 to 58143269 61 - snRNA gene predicted gene, 23475
Gm22488 15 58146616 to 58146742 126 + snoRNA gene predicted gene, 22488
5430408I23Rik 15 58155874 to 58156613 739 unclassified gene RIKEN cDNA 5430408I23 gene
D15Mit121 15 58158759 to 58158901 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 121
Tssr134392 15 58164826 to 58164865 39 - TSS region transcription start site region 134392
Gm36112 15 58166128 to 58171728 5600 + lncRNA gene predicted gene, 36112
Fbxo32 15 58175879 to 58214892 39013 - protein coding gene F-box protein 32
Tssr134393 15 58182977 to 58182981 4 - TSS region transcription start site region 134393
Tssr134394 15 58191411 to 58191440 29 - TSS region transcription start site region 134394
Cpgi7114 15 58213770 to 58215626 1856 CpG island CpG island 7114
Gm15943 15 58214475 to 58324053 109578 + antisense lncRNA gene predicted gene 15943
Tssr134395 15 58214837 to 58214848 11 - TSS region transcription start site region 134395
Tssr134396 15 58214882 to 58214926 44 - TSS region transcription start site region 134396
Tssr131336 15 58245823 to 58245841 18 + TSS region transcription start site region 131336
Gm36193 15 58245922 to 58253360 7438 + lncRNA gene predicted gene, 36193
Klhl38 15 58314573 to 58324169 9596 - protein coding gene kelch-like 38
Tssr134397 15 58324119 to 58324143 24 - TSS region transcription start site region 134397
Tssr134398 15 58324161 to 58324178 17 - TSS region transcription start site region 134398
Anxa13 15 58341471 to 58389244 47773 - protein coding gene annexin A13
Cpgi7115 15 58352576 to 58352933 357 CpG island CpG island 7115
Tssr134399 15 58352728 to 58352749 21 - TSS region transcription start site region 134399
Tssr134400 15 58352843 to 58352860 17 - TSS region transcription start site region 134400
Bmd4 15 103517472 to 56323312 -47194160 QTL bone mineral density 4