Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:55865627-57494539

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sntb1 15 55638505 to 55907304 268799 - protein coding gene syntrophin, basic 1
Tssr131307 15 55886317 to 55886322 5 + TSS region transcription start site region 131307
Cpgi7102 15 55905707 to 55907269 1562 CpG island CpG island 7102
Tssr134347 15 55906065 to 55906102 37 - TSS region transcription start site region 134347
Tssr134348 15 55906589 to 55906620 31 - TSS region transcription start site region 134348
Tssr134349 15 55906742 to 55906796 54 - TSS region transcription start site region 134349
Tssr134350 15 55906800 to 55906821 21 - TSS region transcription start site region 134350
Tssr134351 15 55906882 to 55906903 21 - TSS region transcription start site region 134351
Tssr134352 15 55906917 to 55906957 40 - TSS region transcription start site region 134352
Tssr134353 15 55908084 to 55908101 17 - TSS region transcription start site region 134353
Tssr134354 15 55917060 to 55917079 19 - TSS region transcription start site region 134354
Gm46516 15 55923402 to 55960906 37504 + lincRNA gene predicted gene, 46516
Gm10370 15 55930702 to 55932415 1713 + protein coding gene predicted gene 10370
Gm7595 15 55973605 to 55974505 900 + pseudogene predicted gene 7595
Gm49210 15 55976162 to 55976463 301 + pseudogene predicted gene, 49210
Gm49211 15 56004044 to 56005717 1673 + lincRNA gene predicted gene, 49211
Gm49212 15 56046552 to 56049832 3280 - lincRNA gene predicted gene, 49212
Tssr134355 15 56049848 to 56049851 3 - TSS region transcription start site region 134355
Hba-ps3 15 56171988 to 56172389 401 - pseudogene hemoglobin alpha, pseudogene 3
Tssr134356 15 56172113 to 56172141 28 - TSS region transcription start site region 134356
Tssr134357 15 56172416 to 56172425 9 - TSS region transcription start site region 134357
Hrq2 15 56236999 to 56237197 198 QTL heart rate QTL 2
D15Mit184 15 56236999 to 56237197 198 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 184
D15Mit115 15 56323312 to 56323454 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 115
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Gm41326 15 56410155 to 56435878 25723 + lncRNA gene predicted gene, 41326
Gm49213 15 56415013 to 56415226 213 + pseudogene predicted gene, 49213
Tssr134358 15 56429232 to 56429233 1 - TSS region transcription start site region 134358
Has2 15 56665627 to 56694539 28912 - protein coding gene hyaluronan synthase 2
Has2os 15 56689944 to 56694460 4516 + lncRNA gene hyaluronan synthase 2, opposite strand
Cpgi7103 15 56692777 to 56693514 737 CpG island CpG island 7103
Tssr134359 15 56694509 to 56694523 14 - TSS region transcription start site region 134359
Tssr134360 15 56694525 to 56694554 29 - TSS region transcription start site region 134360
Tssr134361 15 56694579 to 56694603 24 - TSS region transcription start site region 134361
Tssr131308 15 56695483 to 56695485 2 + TSS region transcription start site region 131308
Gm41327 15 56758362 to 56776362 18000 + lncRNA gene predicted gene, 41327
Gm38516 15 56765401 to 56768626 3225 + lncRNA gene predicted gene, 38516
Gm5673 15 56782642 to 56783428 786 - pseudogene predicted gene 5673
Gm2582 15 56880409 to 57006624 126215 - lincRNA gene predicted gene 2582
D15Mit278 15 57168342 to 57168620 278 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-278
Gm26178 15 57239007 to 57239113 106 - snRNA gene predicted gene, 26178
Slc22a22 15 57243767 to 57477625 233858 - protein coding gene solute carrier family 22 (organic cation transporter), member 22
Tssr134362 15 57265126 to 57265150 24 - TSS region transcription start site region 134362
Tssr4597 15 57347684 to 57347695 11 + TSS region transcription start site region 4597
Gm49229 15 57347749 to 57348090 341 + pseudogene predicted gene, 49229
Gm18094 15 57429984 to 57430713 729 + pseudogene predicted gene, 18094
Gm49235 15 57487947 to 57488871 924 - pseudogene predicted gene, 49235
Bmd4 15 103517472 to 56323312 -47194160 QTL bone mineral density 4