Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:55697642-57868428

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sntb1 15 55638505 to 55907304 268799 - protein coding gene syntrophin, basic 1
D15Mit132 15 55795217 to 55795311 94 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 132
Tssr134346 15 55856015 to 55856019 4 - TSS region transcription start site region 134346
Tssr131307 15 55886317 to 55886322 5 + TSS region transcription start site region 131307
Cpgi7102 15 55905707 to 55907269 1562 CpG island CpG island 7102
Tssr134347 15 55906065 to 55906102 37 - TSS region transcription start site region 134347
Tssr134348 15 55906589 to 55906620 31 - TSS region transcription start site region 134348
Tssr134349 15 55906742 to 55906796 54 - TSS region transcription start site region 134349
Tssr134350 15 55906800 to 55906821 21 - TSS region transcription start site region 134350
Tssr134351 15 55906882 to 55906903 21 - TSS region transcription start site region 134351
Tssr134352 15 55906917 to 55906957 40 - TSS region transcription start site region 134352
Tssr134353 15 55908084 to 55908101 17 - TSS region transcription start site region 134353
Tssr134354 15 55917060 to 55917079 19 - TSS region transcription start site region 134354
Gm46516 15 55923402 to 55960906 37504 + lincRNA gene predicted gene, 46516
Gm10370 15 55930702 to 55932415 1713 + protein coding gene predicted gene 10370
Gm7595 15 55973605 to 55974505 900 + pseudogene predicted gene 7595
Gm49210 15 55976162 to 55976463 301 + pseudogene predicted gene, 49210
Gm49211 15 56004044 to 56005717 1673 + lincRNA gene predicted gene, 49211
Gm49212 15 56046552 to 56049832 3280 - lincRNA gene predicted gene, 49212
Tssr134355 15 56049848 to 56049851 3 - TSS region transcription start site region 134355
Hba-ps3 15 56171988 to 56172389 401 - pseudogene hemoglobin alpha, pseudogene 3
Tssr134356 15 56172113 to 56172141 28 - TSS region transcription start site region 134356
Tssr134357 15 56172416 to 56172425 9 - TSS region transcription start site region 134357
D15Mit184 15 56236999 to 56237197 198 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 184
Hrq2 15 56236999 to 56237197 198 QTL heart rate QTL 2
D15Mit115 15 56323312 to 56323454 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 115
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Gm41326 15 56410155 to 56435878 25723 + lncRNA gene predicted gene, 41326
Gm49213 15 56415013 to 56415226 213 + pseudogene predicted gene, 49213
Tssr134358 15 56429232 to 56429233 1 - TSS region transcription start site region 134358
Has2 15 56665627 to 56694539 28912 - protein coding gene hyaluronan synthase 2
Has2os 15 56689944 to 56694460 4516 + lncRNA gene hyaluronan synthase 2, opposite strand
Cpgi7103 15 56692777 to 56693514 737 CpG island CpG island 7103
Tssr134359 15 56694509 to 56694523 14 - TSS region transcription start site region 134359
Tssr134360 15 56694525 to 56694554 29 - TSS region transcription start site region 134360
Tssr134361 15 56694579 to 56694603 24 - TSS region transcription start site region 134361
Tssr131308 15 56695483 to 56695485 2 + TSS region transcription start site region 131308
Gm41327 15 56758362 to 56776362 18000 + lncRNA gene predicted gene, 41327
Gm38516 15 56765401 to 56768626 3225 + lncRNA gene predicted gene, 38516
Gm5673 15 56782642 to 56783428 786 - pseudogene predicted gene 5673
Gm2582 15 56880409 to 57006624 126215 - lincRNA gene predicted gene 2582
D15Mit278 15 57168342 to 57168620 278 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-278
Gm26178 15 57239007 to 57239113 106 - snRNA gene predicted gene, 26178
Slc22a22 15 57243767 to 57477625 233858 - protein coding gene solute carrier family 22 (organic cation transporter), member 22
Tssr134362 15 57265126 to 57265150 24 - TSS region transcription start site region 134362
Tssr4597 15 57347684 to 57347695 11 + TSS region transcription start site region 4597
Gm49229 15 57347749 to 57348090 341 + pseudogene predicted gene, 49229
Gm18094 15 57429984 to 57430713 729 + pseudogene predicted gene, 18094
Gm49235 15 57487947 to 57488871 924 - pseudogene predicted gene, 49235
Gm35627 15 57516100 to 57518262 2162 - lncRNA gene predicted gene, 35627
Gm41328 15 57522591 to 57546495 23904 - lncRNA gene predicted gene, 41328
Gm35682 15 57578749 to 57660115 81366 - lncRNA gene predicted gene, 35682
Gm35771 15 57578930 to 57592827 13897 + lncRNA gene predicted gene, 35771
Tssr134363 15 57660051 to 57660058 7 - TSS region transcription start site region 134363
D15Dcr1 15 57684865 to 57684960 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 1
Cpgi7104 15 57693090 to 57696301 3211 CpG island CpG island 7104
Tssr134364 15 57693770 to 57693783 13 - TSS region transcription start site region 134364
Tssr131309 15 57694101 to 57694117 16 + TSS region transcription start site region 131309
Tssr131310 15 57694651 to 57694686 35 + TSS region transcription start site region 131310
Zhx2 15 57694667 to 57839832 145165 + protein coding gene zinc fingers and homeoboxes 2
Tssr131311 15 57694761 to 57694777 16 + TSS region transcription start site region 131311
Tssr131312 15 57694790 to 57694837 47 + TSS region transcription start site region 131312
Tssr131313 15 57694839 to 57694849 10 + TSS region transcription start site region 131313
Tssr131314 15 57694860 to 57694870 10 + TSS region transcription start site region 131314
Tssr131315 15 57694914 to 57694979 65 + TSS region transcription start site region 131315
Tssr131316 15 57695217 to 57695221 4 + TSS region transcription start site region 131316
Tssr134365 15 57695340 to 57695376 36 - TSS region transcription start site region 134365
Tssr134366 15 57695544 to 57695560 16 - TSS region transcription start site region 134366
Tssr131317 15 57695662 to 57695685 23 + TSS region transcription start site region 131317
Tssr131318 15 57695690 to 57695702 12 + TSS region transcription start site region 131318
Tssr134367 15 57696094 to 57696115 21 - TSS region transcription start site region 134367
Gm16006 15 57708114 to 57708927 813 - antisense lncRNA gene predicted gene 16006
Tssr134368 15 57708921 to 57708936 15 - TSS region transcription start site region 134368
9330154K18Rik 15 57736563 to 57738666 2103 - antisense lncRNA gene RIKEN cDNA 9330154K18 gene
Tssr134369 15 57772831 to 57772842 11 - TSS region transcription start site region 134369
Tssr131319 15 57777312 to 57777315 3 + TSS region transcription start site region 131319
Tssr131320 15 57839598 to 57839604 6 + TSS region transcription start site region 131320
Bmd4 15 103517472 to 56323312 -47194160 QTL bone mineral density 4