Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:54957750-55870803

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26684 15 54952070 to 54964642 12572 + bidirectional promoter lncRNA gene predicted gene, 26684
4930478E11Rik 15 54981333 to 54986891 5558 - lincRNA gene RIKEN cDNA 4930478E11 gene
Gm2491 15 54982171 to 54986891 4720 - unclassified gene predicted gene 2491
Gm49036 15 54986583 to 54987097 514 + pseudogene predicted gene, 49036
Tssr134336 15 54986857 to 54986868 11 - TSS region transcription start site region 134336
Taf2 15 55015131 to 55072152 57021 - protein coding gene TATA-box binding protein associated factor 2
Tssr134337 15 55023149 to 55023153 4 - TSS region transcription start site region 134337
Cpgi7096 15 55071749 to 55072416 667 CpG island CpG island 7096
Tssr134338 15 55072139 to 55072161 22 - TSS region transcription start site region 134338
Tssr134339 15 55072169 to 55072177 8 - TSS region transcription start site region 134339
Dscc1 15 55076099 to 55090491 14392 - protein coding gene DNA replication and sister chromatid cohesion 1
Tssr134340 15 55084096 to 55084111 15 - TSS region transcription start site region 134340
Gm41325 15 55084561 to 55097699 13138 + antisense lncRNA gene predicted gene, 41325
Cpgi7097 15 55090015 to 55090883 868 CpG island CpG island 7097
Tssr134341 15 55090422 to 55090496 74 - TSS region transcription start site region 134341
Gm9920 15 55099917 to 55113582 13665 - lncRNA gene predicted gene 9920
Cpgi7098 15 55112256 to 55113123 867 CpG island CpG island 7098
Deptor 15 55112317 to 55259271 146954 + protein coding gene DEP domain containing MTOR-interacting protein
Tssr131287 15 55112331 to 55112346 15 + TSS region transcription start site region 131287
Tssr131288 15 55112360 to 55112403 43 + TSS region transcription start site region 131288
Tssr131289 15 55112420 to 55112451 31 + TSS region transcription start site region 131289
Tssr131290 15 55112452 to 55112484 32 + TSS region transcription start site region 131290
D15Mit183 15 55175210 to 55175335 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 183
Tssr131291 15 55208725 to 55208732 7 + TSS region transcription start site region 131291
Tssr131292 15 55208767 to 55208783 16 + TSS region transcription start site region 131292
Tssr131293 15 55252433 to 55252452 19 + TSS region transcription start site region 131293
Tssr131294 15 55255776 to 55255787 11 + TSS region transcription start site region 131294
Tssr131295 15 55258398 to 55258404 6 + TSS region transcription start site region 131295
Gm26296 15 55262542 to 55262603 61 - snRNA gene predicted gene, 26296
Tssr131296 15 55264973 to 55264981 8 + TSS region transcription start site region 131296
D15Mit26 15 55268555 to 55268666 111 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 26
D15Mit26.1 15 55268644 to 55268890 246 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 26.1
Gm35312 15 55278095 to 55282124 4029 - lncRNA gene predicted gene, 35312
D15Mit155 15 55290252 to 55290396 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 155
Cpgi7099 15 55306367 to 55306619 252 CpG island CpG island 7099
Cpgi7100 15 55307741 to 55308668 927 CpG island CpG island 7100
Tssr131297 15 55307743 to 55307762 19 + TSS region transcription start site region 131297
Col14a1 15 55307750 to 55520803 213053 + protein coding gene collagen, type XIV, alpha 1
Tssr131298 15 55307798 to 55307805 7 + TSS region transcription start site region 131298
Tssr131299 15 55307858 to 55307861 3 + TSS region transcription start site region 131299
1700040F17Rik 15 55436115 to 55439020 2905 - antisense lncRNA gene RIKEN cDNA 1700040F17 gene
Tssr131300 15 55457720 to 55457742 22 + TSS region transcription start site region 131300
Gm18787 15 55474780 to 55475563 783 - pseudogene predicted gene, 18787
Gm49257 15 55475530 to 55479377 3847 - unclassified non-coding RNA gene predicted gene, 49257
Gm35470 15 55498421 to 55516153 17732 - lncRNA gene predicted gene, 35470
A430088I17Rik 15 55504841 to 55507503 2662 unclassified gene RIKEN cDNA A430088I17 gene
Mrpl13 15 55534095 to 55557312 23217 - protein coding gene mitochondrial ribosomal protein L13
Cpgi7101 15 55557061 to 55557913 852 CpG island CpG island 7101
Tssr134342 15 55557296 to 55557332 36 - TSS region transcription start site region 134342
Tssr134343 15 55557343 to 55557354 11 - TSS region transcription start site region 134343
Tssr131301 15 55557399 to 55557436 37 + TSS region transcription start site region 131301
Mtbp 15 55557408 to 55626423 69015 + protein coding gene Mdm2, transformed 3T3 cell double minute p53 binding protein
Tssr131302 15 55557554 to 55557574 20 + TSS region transcription start site region 131302
Tssr131303 15 55557575 to 55557604 29 + TSS region transcription start site region 131303
Tssr131304 15 55557624 to 55557635 11 + TSS region transcription start site region 131304
Tssr131305 15 55591752 to 55591762 10 + TSS region transcription start site region 131305
Tssr131306 15 55591773 to 55591791 18 + TSS region transcription start site region 131306
1110059G02Rik 15 55636389 to 55637191 802 unclassified gene RIKEN cDNA 1110059G02 gene
Tssr134344 15 55636804 to 55636808 4 - TSS region transcription start site region 134344
Sntb1 15 55638505 to 55907304 268799 - protein coding gene syntrophin, basic 1
Tssr134345 15 55638692 to 55638712 20 - TSS region transcription start site region 134345
5530400N10Rik 15 55688610 to 55690224 1614 unclassified gene RIKEN cDNA 5530400N10 gene
D15Mit132 15 55795217 to 55795311 94 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 132
Tssr134346 15 55856015 to 55856019 4 - TSS region transcription start site region 134346