Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:54578145-55208148

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mal2 15 54571366 to 54602846 31480 + protein coding gene mal, T cell differentiation protein 2
Tssr131274 15 54595187 to 54595191 4 + TSS region transcription start site region 131274
Tssr131275 15 54600730 to 54600737 7 + TSS region transcription start site region 131275
Tssr131276 15 54600860 to 54600867 7 + TSS region transcription start site region 131276
Tssr131277 15 54600891 to 54600910 19 + TSS region transcription start site region 131277
Tssr131278 15 54600923 to 54600928 5 + TSS region transcription start site region 131278
Tssr131279 15 54601036 to 54601040 4 + TSS region transcription start site region 131279
Tssr131280 15 54601615 to 54601653 38 + TSS region transcription start site region 131280
Tssr131281 15 54745615 to 54745632 17 + TSS region transcription start site region 131281
Cpgi7092 15 54745841 to 54746419 578 CpG island CpG island 7092
Tssr131282 15 54745870 to 54745881 11 + TSS region transcription start site region 131282
Tssr131283 15 54745902 to 54745916 14 + TSS region transcription start site region 131283
Ccn3 15 54745928 to 54753762 7834 + protein coding gene cellular communication network factor 3
Cpgi7093 15 54747809 to 54748029 220 CpG island CpG island 7093
Tssr131284 15 54752982 to 54753017 35 + TSS region transcription start site region 131284
Gm7577 15 54764532 to 54765513 981 - pseudogene predicted gene 7577
Tssr134320 15 54818984 to 54818987 3 - TSS region transcription start site region 134320
Enpp2 15 54838901 to 54952887 113986 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 2
Tssr134321 15 54847324 to 54847331 7 - TSS region transcription start site region 134321
Tssr134322 15 54847347 to 54847356 9 - TSS region transcription start site region 134322
Tssr134323 15 54847360 to 54847367 7 - TSS region transcription start site region 134323
Tssr134324 15 54847381 to 54847396 15 - TSS region transcription start site region 134324
Tssr134325 15 54847402 to 54847420 18 - TSS region transcription start site region 134325
Tssr134326 15 54847428 to 54847440 12 - TSS region transcription start site region 134326
Tssr134327 15 54853364 to 54853377 13 - TSS region transcription start site region 134327
Tssr134328 15 54853407 to 54853424 17 - TSS region transcription start site region 134328
D15Mit230 15 54865687 to 54865811 124 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 230
Tssr134329 15 54890765 to 54890769 4 - TSS region transcription start site region 134329
Tssr131285 15 54892553 to 54892560 7 + TSS region transcription start site region 131285
Tssr134330 15 54893145 to 54893148 3 - TSS region transcription start site region 134330
Tssr134331 15 54906860 to 54906901 41 - TSS region transcription start site region 134331
Cpgi7094 15 54914648 to 54915002 354 CpG island CpG island 7094
Tssr134332 15 54920010 to 54920037 27 - TSS region transcription start site region 134332
Tssr134333 15 54920115 to 54920138 23 - TSS region transcription start site region 134333
D15Mit231 15 54948726 to 54948849 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 231
Gm26684 15 54952070 to 54964642 12572 + bidirectional promoter lncRNA gene predicted gene, 26684
Cpgi7095 15 54952251 to 54952835 584 CpG island CpG island 7095
Tssr134334 15 54952609 to 54952622 13 - TSS region transcription start site region 134334
Tssr134335 15 54952653 to 54952694 41 - TSS region transcription start site region 134335
Tssr131286 15 54952939 to 54952975 36 + TSS region transcription start site region 131286
4930478E11Rik 15 54981333 to 54986891 5558 - lincRNA gene RIKEN cDNA 4930478E11 gene
Gm2491 15 54982171 to 54986891 4720 - unclassified gene predicted gene 2491
Gm49036 15 54986583 to 54987097 514 + pseudogene predicted gene, 49036
Tssr134336 15 54986857 to 54986868 11 - TSS region transcription start site region 134336
Taf2 15 55015131 to 55072152 57021 - protein coding gene TATA-box binding protein associated factor 2
Tssr134337 15 55023149 to 55023153 4 - TSS region transcription start site region 134337
Cpgi7096 15 55071749 to 55072416 667 CpG island CpG island 7096
Tssr134338 15 55072139 to 55072161 22 - TSS region transcription start site region 134338
Tssr134339 15 55072169 to 55072177 8 - TSS region transcription start site region 134339
Dscc1 15 55076099 to 55090491 14392 - protein coding gene DNA replication and sister chromatid cohesion 1
Tssr134340 15 55084096 to 55084111 15 - TSS region transcription start site region 134340
Gm41325 15 55084561 to 55097699 13138 + antisense lncRNA gene predicted gene, 41325
Cpgi7097 15 55090015 to 55090883 868 CpG island CpG island 7097
Tssr134341 15 55090422 to 55090496 74 - TSS region transcription start site region 134341
Gm9920 15 55099917 to 55113582 13665 - lncRNA gene predicted gene 9920
Cpgi7098 15 55112256 to 55113123 867 CpG island CpG island 7098
Deptor 15 55112317 to 55259271 146954 + protein coding gene DEP domain containing MTOR-interacting protein
Tssr131287 15 55112331 to 55112346 15 + TSS region transcription start site region 131287
Tssr131288 15 55112360 to 55112403 43 + TSS region transcription start site region 131288
Tssr131289 15 55112420 to 55112451 31 + TSS region transcription start site region 131289
Tssr131290 15 55112452 to 55112484 32 + TSS region transcription start site region 131290
D15Mit183 15 55175210 to 55175335 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 183