Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:53853398-56663404

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd12 15 53453810 to 53902537 448727 - protein coding gene sterile alpha motif domain containing 12
Gm7489 15 53884906 to 53886597 1691 + protein coding gene predicted gene 7489
Cpgi7090 15 53902063 to 53902776 713 CpG island CpG island 7090
Tssr134312 15 53902393 to 53902450 57 - TSS region transcription start site region 134312
Tssr134313 15 53902472 to 53902515 43 - TSS region transcription start site region 134313
Gm26933 15 54034506 to 54035982 1476 - pseudogene predicted gene, 26933
D15Mit269 15 54246546 to 54246660 114 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 269
Tnfrsf11b 15 54250619 to 54278484 27865 - protein coding gene tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
Tssr134314 15 54278295 to 54278312 17 - TSS region transcription start site region 134314
Tssr134315 15 54278420 to 54278433 13 - TSS region transcription start site region 134315
Tssr134316 15 54278597 to 54278630 33 - TSS region transcription start site region 134316
Tssr134317 15 54278650 to 54278679 29 - TSS region transcription start site region 134317
Gm7566 15 54304565 to 54305134 569 - pseudogene predicted gene 7566
Gm5215 15 54311961 to 54312365 404 - pseudogene predicted gene 5215
Tssr134318 15 54312385 to 54312396 11 - TSS region transcription start site region 134318
Tssr131264 15 54410647 to 54410664 17 + TSS region transcription start site region 131264
Tssr131265 15 54410667 to 54410678 11 + TSS region transcription start site region 131265
Tssr131266 15 54410735 to 54410748 13 + TSS region transcription start site region 131266
Tssr131267 15 54410755 to 54410797 42 + TSS region transcription start site region 131267
Colec10 15 54410774 to 54466358 55584 + protein coding gene collectin sub-family member 10
Tssr131268 15 54410808 to 54410821 13 + TSS region transcription start site region 131268
Tssr131269 15 54435011 to 54435016 5 + TSS region transcription start site region 131269
Gm18152 15 54458700 to 54459280 580 - pseudogene predicted gene, 18152
Tssr134319 15 54481878 to 54481879 1 - TSS region transcription start site region 134319
Gm20070 15 54487900 to 54488126 226 + pseudogene predicted gene, 20070
Cpgi7091 15 54570997 to 54572035 1038 CpG island CpG island 7091
Tssr131270 15 54571179 to 54571213 34 + TSS region transcription start site region 131270
Tssr131271 15 54571340 to 54571357 17 + TSS region transcription start site region 131271
Tssr131272 15 54571358 to 54571439 81 + TSS region transcription start site region 131272
Mal2 15 54571366 to 54602846 31480 + protein coding gene mal, T cell differentiation protein 2
Tssr131273 15 54571470 to 54571507 37 + TSS region transcription start site region 131273
Tssr131274 15 54595187 to 54595191 4 + TSS region transcription start site region 131274
Tssr131275 15 54600730 to 54600737 7 + TSS region transcription start site region 131275
Tssr131276 15 54600860 to 54600867 7 + TSS region transcription start site region 131276
Tssr131277 15 54600891 to 54600910 19 + TSS region transcription start site region 131277
Tssr131278 15 54600923 to 54600928 5 + TSS region transcription start site region 131278
Tssr131279 15 54601036 to 54601040 4 + TSS region transcription start site region 131279
Tssr131280 15 54601615 to 54601653 38 + TSS region transcription start site region 131280
Tssr131281 15 54745615 to 54745632 17 + TSS region transcription start site region 131281
Cpgi7092 15 54745841 to 54746419 578 CpG island CpG island 7092
Tssr131282 15 54745870 to 54745881 11 + TSS region transcription start site region 131282
Tssr131283 15 54745902 to 54745916 14 + TSS region transcription start site region 131283
Ccn3 15 54745928 to 54753762 7834 + protein coding gene cellular communication network factor 3
Cpgi7093 15 54747809 to 54748029 220 CpG island CpG island 7093
Tssr131284 15 54752982 to 54753017 35 + TSS region transcription start site region 131284
Gm7577 15 54764532 to 54765513 981 - pseudogene predicted gene 7577
Tssr134320 15 54818984 to 54818987 3 - TSS region transcription start site region 134320
Enpp2 15 54838901 to 54952887 113986 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 2
Tssr134321 15 54847324 to 54847331 7 - TSS region transcription start site region 134321
Tssr134322 15 54847347 to 54847356 9 - TSS region transcription start site region 134322
Tssr134323 15 54847360 to 54847367 7 - TSS region transcription start site region 134323
Tssr134324 15 54847381 to 54847396 15 - TSS region transcription start site region 134324
Tssr134325 15 54847402 to 54847420 18 - TSS region transcription start site region 134325
Tssr134326 15 54847428 to 54847440 12 - TSS region transcription start site region 134326
Tssr134327 15 54853364 to 54853377 13 - TSS region transcription start site region 134327
Tssr134328 15 54853407 to 54853424 17 - TSS region transcription start site region 134328
D15Mit230 15 54865687 to 54865811 124 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 230
Tssr134329 15 54890765 to 54890769 4 - TSS region transcription start site region 134329
Tssr131285 15 54892553 to 54892560 7 + TSS region transcription start site region 131285
Tssr134330 15 54893145 to 54893148 3 - TSS region transcription start site region 134330
Tssr134331 15 54906860 to 54906901 41 - TSS region transcription start site region 134331
Cpgi7094 15 54914648 to 54915002 354 CpG island CpG island 7094
Tssr134332 15 54920010 to 54920037 27 - TSS region transcription start site region 134332
Tssr134333 15 54920115 to 54920138 23 - TSS region transcription start site region 134333
D15Mit231 15 54948726 to 54948849 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 231
Gm26684 15 54952070 to 54964642 12572 + bidirectional promoter lncRNA gene predicted gene, 26684
Cpgi7095 15 54952251 to 54952835 584 CpG island CpG island 7095
Tssr134334 15 54952609 to 54952622 13 - TSS region transcription start site region 134334
Tssr134335 15 54952653 to 54952694 41 - TSS region transcription start site region 134335
Tssr131286 15 54952939 to 54952975 36 + TSS region transcription start site region 131286
4930478E11Rik 15 54981333 to 54986891 5558 - lincRNA gene RIKEN cDNA 4930478E11 gene
Gm2491 15 54982171 to 54986891 4720 - unclassified gene predicted gene 2491
Gm49036 15 54986583 to 54987097 514 + pseudogene predicted gene, 49036
Tssr134336 15 54986857 to 54986868 11 - TSS region transcription start site region 134336
Taf2 15 55015131 to 55072152 57021 - protein coding gene TATA-box binding protein associated factor 2
Tssr134337 15 55023149 to 55023153 4 - TSS region transcription start site region 134337
Cpgi7096 15 55071749 to 55072416 667 CpG island CpG island 7096
Tssr134338 15 55072139 to 55072161 22 - TSS region transcription start site region 134338
Tssr134339 15 55072169 to 55072177 8 - TSS region transcription start site region 134339
Dscc1 15 55076099 to 55090491 14392 - protein coding gene DNA replication and sister chromatid cohesion 1
Tssr134340 15 55084096 to 55084111 15 - TSS region transcription start site region 134340
Gm41325 15 55084561 to 55097699 13138 + antisense lncRNA gene predicted gene, 41325
Cpgi7097 15 55090015 to 55090883 868 CpG island CpG island 7097
Tssr134341 15 55090422 to 55090496 74 - TSS region transcription start site region 134341
Gm9920 15 55099917 to 55113582 13665 - lncRNA gene predicted gene 9920
Cpgi7098 15 55112256 to 55113123 867 CpG island CpG island 7098
Deptor 15 55112317 to 55259271 146954 + protein coding gene DEP domain containing MTOR-interacting protein
Tssr131287 15 55112331 to 55112346 15 + TSS region transcription start site region 131287
Tssr131288 15 55112360 to 55112403 43 + TSS region transcription start site region 131288
Tssr131289 15 55112420 to 55112451 31 + TSS region transcription start site region 131289
Tssr131290 15 55112452 to 55112484 32 + TSS region transcription start site region 131290
D15Mit183 15 55175210 to 55175335 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 183
Tssr131291 15 55208725 to 55208732 7 + TSS region transcription start site region 131291
Tssr131292 15 55208767 to 55208783 16 + TSS region transcription start site region 131292
Tssr131293 15 55252433 to 55252452 19 + TSS region transcription start site region 131293
Tssr131294 15 55255776 to 55255787 11 + TSS region transcription start site region 131294
Tssr131295 15 55258398 to 55258404 6 + TSS region transcription start site region 131295
Gm26296 15 55262542 to 55262603 61 - snRNA gene predicted gene, 26296
Tssr131296 15 55264973 to 55264981 8 + TSS region transcription start site region 131296
D15Mit26 15 55268555 to 55268666 111 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 26
D15Mit26.1 15 55268644 to 55268890 246 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 26.1
Gm35312 15 55278095 to 55282124 4029 - lncRNA gene predicted gene, 35312
D15Mit155 15 55290252 to 55290396 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 155
Cpgi7099 15 55306367 to 55306619 252 CpG island CpG island 7099
Cpgi7100 15 55307741 to 55308668 927 CpG island CpG island 7100
Tssr131297 15 55307743 to 55307762 19 + TSS region transcription start site region 131297
Col14a1 15 55307750 to 55520803 213053 + protein coding gene collagen, type XIV, alpha 1
Tssr131298 15 55307798 to 55307805 7 + TSS region transcription start site region 131298
Tssr131299 15 55307858 to 55307861 3 + TSS region transcription start site region 131299
1700040F17Rik 15 55436115 to 55439020 2905 - antisense lncRNA gene RIKEN cDNA 1700040F17 gene
Tssr131300 15 55457720 to 55457742 22 + TSS region transcription start site region 131300
Gm18787 15 55474780 to 55475563 783 - pseudogene predicted gene, 18787
Gm49257 15 55475530 to 55479377 3847 - unclassified non-coding RNA gene predicted gene, 49257
Gm35470 15 55498421 to 55516153 17732 - lncRNA gene predicted gene, 35470
A430088I17Rik 15 55504841 to 55507503 2662 unclassified gene RIKEN cDNA A430088I17 gene
Mrpl13 15 55534095 to 55557312 23217 - protein coding gene mitochondrial ribosomal protein L13
Cpgi7101 15 55557061 to 55557913 852 CpG island CpG island 7101
Tssr134342 15 55557296 to 55557332 36 - TSS region transcription start site region 134342
Tssr134343 15 55557343 to 55557354 11 - TSS region transcription start site region 134343
Tssr131301 15 55557399 to 55557436 37 + TSS region transcription start site region 131301
Mtbp 15 55557408 to 55626423 69015 + protein coding gene Mdm2, transformed 3T3 cell double minute p53 binding protein
Tssr131302 15 55557554 to 55557574 20 + TSS region transcription start site region 131302
Tssr131303 15 55557575 to 55557604 29 + TSS region transcription start site region 131303
Tssr131304 15 55557624 to 55557635 11 + TSS region transcription start site region 131304
Tssr131305 15 55591752 to 55591762 10 + TSS region transcription start site region 131305
Tssr131306 15 55591773 to 55591791 18 + TSS region transcription start site region 131306
1110059G02Rik 15 55636389 to 55637191 802 unclassified gene RIKEN cDNA 1110059G02 gene
Tssr134344 15 55636804 to 55636808 4 - TSS region transcription start site region 134344
Sntb1 15 55638505 to 55907304 268799 - protein coding gene syntrophin, basic 1
Tssr134345 15 55638692 to 55638712 20 - TSS region transcription start site region 134345
5530400N10Rik 15 55688610 to 55690224 1614 unclassified gene RIKEN cDNA 5530400N10 gene
D15Mit132 15 55795217 to 55795311 94 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 132
Tssr134346 15 55856015 to 55856019 4 - TSS region transcription start site region 134346
Tssr131307 15 55886317 to 55886322 5 + TSS region transcription start site region 131307
Cpgi7102 15 55905707 to 55907269 1562 CpG island CpG island 7102
Tssr134347 15 55906065 to 55906102 37 - TSS region transcription start site region 134347
Tssr134348 15 55906589 to 55906620 31 - TSS region transcription start site region 134348
Tssr134349 15 55906742 to 55906796 54 - TSS region transcription start site region 134349
Tssr134350 15 55906800 to 55906821 21 - TSS region transcription start site region 134350
Tssr134351 15 55906882 to 55906903 21 - TSS region transcription start site region 134351
Tssr134352 15 55906917 to 55906957 40 - TSS region transcription start site region 134352
Tssr134353 15 55908084 to 55908101 17 - TSS region transcription start site region 134353
Tssr134354 15 55917060 to 55917079 19 - TSS region transcription start site region 134354
Gm46516 15 55923402 to 55960906 37504 + lincRNA gene predicted gene, 46516
Gm10370 15 55930702 to 55932415 1713 + protein coding gene predicted gene 10370
Gm7595 15 55973605 to 55974505 900 + pseudogene predicted gene 7595
Gm49210 15 55976162 to 55976463 301 + pseudogene predicted gene, 49210
Gm49211 15 56004044 to 56005717 1673 + lincRNA gene predicted gene, 49211
Gm49212 15 56046552 to 56049832 3280 - lincRNA gene predicted gene, 49212
Tssr134355 15 56049848 to 56049851 3 - TSS region transcription start site region 134355
Hba-ps3 15 56171988 to 56172389 401 - pseudogene hemoglobin alpha, pseudogene 3
Tssr134356 15 56172113 to 56172141 28 - TSS region transcription start site region 134356
Tssr134357 15 56172416 to 56172425 9 - TSS region transcription start site region 134357
Hrq2 15 56236999 to 56237197 198 QTL heart rate QTL 2
D15Mit184 15 56236999 to 56237197 198 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 184
D15Mit115 15 56323312 to 56323454 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 115
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Gm41326 15 56410155 to 56435878 25723 + lncRNA gene predicted gene, 41326
Gm49213 15 56415013 to 56415226 213 + pseudogene predicted gene, 49213
Tssr134358 15 56429232 to 56429233 1 - TSS region transcription start site region 134358
Bmd4 15 103517472 to 56323312 -47194160 QTL bone mineral density 4