Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:53564565-55045134

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd12 15 53453810 to 53902537 448727 - protein coding gene sterile alpha motif domain containing 12
Gm23200 15 53613067 to 53613198 131 - snoRNA gene predicted gene, 23200
Mir28c 15 53614205 to 53614279 74 - miRNA gene microRNA 28c
Tssr131262 15 53621649 to 53621659 10 + TSS region transcription start site region 131262
1700015H07Rik 15 53621655 to 53623270 1615 + antisense lncRNA gene RIKEN cDNA 1700015H07 gene
Tssr131263 15 53639108 to 53639113 5 + TSS region transcription start site region 131263
Gm7489 15 53884906 to 53886597 1691 + protein coding gene predicted gene 7489
Cpgi7090 15 53902063 to 53902776 713 CpG island CpG island 7090
Tssr134312 15 53902393 to 53902450 57 - TSS region transcription start site region 134312
Tssr134313 15 53902472 to 53902515 43 - TSS region transcription start site region 134313
Gm26933 15 54034506 to 54035982 1476 - pseudogene predicted gene, 26933
D15Mit269 15 54246546 to 54246660 114 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 269
Tnfrsf11b 15 54250619 to 54278484 27865 - protein coding gene tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
Tssr134314 15 54278295 to 54278312 17 - TSS region transcription start site region 134314
Tssr134315 15 54278420 to 54278433 13 - TSS region transcription start site region 134315
Tssr134316 15 54278597 to 54278630 33 - TSS region transcription start site region 134316
Tssr134317 15 54278650 to 54278679 29 - TSS region transcription start site region 134317
Gm7566 15 54304565 to 54305134 569 - pseudogene predicted gene 7566
Gm5215 15 54311961 to 54312365 404 - pseudogene predicted gene 5215
Tssr134318 15 54312385 to 54312396 11 - TSS region transcription start site region 134318
Tssr131264 15 54410647 to 54410664 17 + TSS region transcription start site region 131264
Tssr131265 15 54410667 to 54410678 11 + TSS region transcription start site region 131265
Tssr131266 15 54410735 to 54410748 13 + TSS region transcription start site region 131266
Tssr131267 15 54410755 to 54410797 42 + TSS region transcription start site region 131267
Colec10 15 54410774 to 54466358 55584 + protein coding gene collectin sub-family member 10
Tssr131268 15 54410808 to 54410821 13 + TSS region transcription start site region 131268
Tssr131269 15 54435011 to 54435016 5 + TSS region transcription start site region 131269
Gm18152 15 54458700 to 54459280 580 - pseudogene predicted gene, 18152
Tssr134319 15 54481878 to 54481879 1 - TSS region transcription start site region 134319
Gm20070 15 54487900 to 54488126 226 + pseudogene predicted gene, 20070
Cpgi7091 15 54570997 to 54572035 1038 CpG island CpG island 7091
Tssr131270 15 54571179 to 54571213 34 + TSS region transcription start site region 131270
Tssr131271 15 54571340 to 54571357 17 + TSS region transcription start site region 131271
Tssr131272 15 54571358 to 54571439 81 + TSS region transcription start site region 131272
Mal2 15 54571366 to 54602846 31480 + protein coding gene mal, T cell differentiation protein 2
Tssr131273 15 54571470 to 54571507 37 + TSS region transcription start site region 131273
Tssr131274 15 54595187 to 54595191 4 + TSS region transcription start site region 131274
Tssr131275 15 54600730 to 54600737 7 + TSS region transcription start site region 131275
Tssr131276 15 54600860 to 54600867 7 + TSS region transcription start site region 131276
Tssr131277 15 54600891 to 54600910 19 + TSS region transcription start site region 131277
Tssr131278 15 54600923 to 54600928 5 + TSS region transcription start site region 131278
Tssr131279 15 54601036 to 54601040 4 + TSS region transcription start site region 131279
Tssr131280 15 54601615 to 54601653 38 + TSS region transcription start site region 131280
Tssr131281 15 54745615 to 54745632 17 + TSS region transcription start site region 131281
Cpgi7092 15 54745841 to 54746419 578 CpG island CpG island 7092
Tssr131282 15 54745870 to 54745881 11 + TSS region transcription start site region 131282
Tssr131283 15 54745902 to 54745916 14 + TSS region transcription start site region 131283
Ccn3 15 54745928 to 54753762 7834 + protein coding gene cellular communication network factor 3
Cpgi7093 15 54747809 to 54748029 220 CpG island CpG island 7093
Tssr131284 15 54752982 to 54753017 35 + TSS region transcription start site region 131284
Gm7577 15 54764532 to 54765513 981 - pseudogene predicted gene 7577
Tssr134320 15 54818984 to 54818987 3 - TSS region transcription start site region 134320
Enpp2 15 54838901 to 54952887 113986 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 2
Tssr134321 15 54847324 to 54847331 7 - TSS region transcription start site region 134321
Tssr134322 15 54847347 to 54847356 9 - TSS region transcription start site region 134322
Tssr134323 15 54847360 to 54847367 7 - TSS region transcription start site region 134323
Tssr134324 15 54847381 to 54847396 15 - TSS region transcription start site region 134324
Tssr134325 15 54847402 to 54847420 18 - TSS region transcription start site region 134325
Tssr134326 15 54847428 to 54847440 12 - TSS region transcription start site region 134326
Tssr134327 15 54853364 to 54853377 13 - TSS region transcription start site region 134327
Tssr134328 15 54853407 to 54853424 17 - TSS region transcription start site region 134328
D15Mit230 15 54865687 to 54865811 124 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 230
Tssr134329 15 54890765 to 54890769 4 - TSS region transcription start site region 134329
Tssr131285 15 54892553 to 54892560 7 + TSS region transcription start site region 131285
Tssr134330 15 54893145 to 54893148 3 - TSS region transcription start site region 134330
Tssr134331 15 54906860 to 54906901 41 - TSS region transcription start site region 134331
Cpgi7094 15 54914648 to 54915002 354 CpG island CpG island 7094
Tssr134332 15 54920010 to 54920037 27 - TSS region transcription start site region 134332
Tssr134333 15 54920115 to 54920138 23 - TSS region transcription start site region 134333
D15Mit231 15 54948726 to 54948849 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 231
Gm26684 15 54952070 to 54964642 12572 + bidirectional promoter lncRNA gene predicted gene, 26684
Cpgi7095 15 54952251 to 54952835 584 CpG island CpG island 7095
Tssr134334 15 54952609 to 54952622 13 - TSS region transcription start site region 134334
Tssr134335 15 54952653 to 54952694 41 - TSS region transcription start site region 134335
Tssr131286 15 54952939 to 54952975 36 + TSS region transcription start site region 131286
4930478E11Rik 15 54981333 to 54986891 5558 - lincRNA gene RIKEN cDNA 4930478E11 gene
Gm2491 15 54982171 to 54986891 4720 - unclassified gene predicted gene 2491
Gm49036 15 54986583 to 54987097 514 + pseudogene predicted gene, 49036
Tssr134336 15 54986857 to 54986868 11 - TSS region transcription start site region 134336
Taf2 15 55015131 to 55072152 57021 - protein coding gene TATA-box binding protein associated factor 2
Tssr134337 15 55023149 to 55023153 4 - TSS region transcription start site region 134337