Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:53117063-54687776

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ext1 15 53068261 to 53346183 277922 - protein coding gene exostoses (multiple) 1
Tssr134299 15 53151923 to 53151927 4 - TSS region transcription start site region 134299
Tssr134300 15 53189098 to 53189101 3 - TSS region transcription start site region 134300
Tssr4596 15 53194157 to 53194158 1 + TSS region transcription start site region 4596
Tssr134301 15 53258158 to 53258161 3 - TSS region transcription start site region 134301
D15Mit25 15 53259225 to 53259358 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 25
Tssr134302 15 53266944 to 53266960 16 - TSS region transcription start site region 134302
Tssr134303 15 53277903 to 53277925 22 - TSS region transcription start site region 134303
Tssr134304 15 53303402 to 53303405 3 - TSS region transcription start site region 134304
D15Wsu126e 15 53308785 to 53309034 249 DNA segment DNA segment, Chr 15, Wayne State University 126, expressed
Tssr134305 15 53327103 to 53327107 4 - TSS region transcription start site region 134305
Tssr134306 15 53327370 to 53327384 14 - TSS region transcription start site region 134306
Tssr134307 15 53331934 to 53331938 4 - TSS region transcription start site region 134307
Cpgi7089 15 53344913 to 53346842 1929 CpG island CpG island 7089
Tssr134308 15 53345767 to 53345784 17 - TSS region transcription start site region 134308
Tssr134309 15 53346096 to 53346110 14 - TSS region transcription start site region 134309
Tssr134310 15 53346118 to 53346169 51 - TSS region transcription start site region 134310
Tssr134311 15 53346175 to 53346206 31 - TSS region transcription start site region 134311
Gm27926 15 53383919 to 53383984 65 + snRNA gene predicted gene, 27926
Samd12 15 53453810 to 53902537 448727 - protein coding gene sterile alpha motif domain containing 12
Gm23200 15 53613067 to 53613198 131 - snoRNA gene predicted gene, 23200
Mir28c 15 53614205 to 53614279 74 - miRNA gene microRNA 28c
Tssr131262 15 53621649 to 53621659 10 + TSS region transcription start site region 131262
1700015H07Rik 15 53621655 to 53623270 1615 + antisense lncRNA gene RIKEN cDNA 1700015H07 gene
Tssr131263 15 53639108 to 53639113 5 + TSS region transcription start site region 131263
Gm7489 15 53884906 to 53886597 1691 + protein coding gene predicted gene 7489
Cpgi7090 15 53902063 to 53902776 713 CpG island CpG island 7090
Tssr134312 15 53902393 to 53902450 57 - TSS region transcription start site region 134312
Tssr134313 15 53902472 to 53902515 43 - TSS region transcription start site region 134313
Gm26933 15 54034506 to 54035982 1476 - pseudogene predicted gene, 26933
D15Mit269 15 54246546 to 54246660 114 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 269
Tnfrsf11b 15 54250619 to 54278484 27865 - protein coding gene tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
Tssr134314 15 54278295 to 54278312 17 - TSS region transcription start site region 134314
Tssr134315 15 54278420 to 54278433 13 - TSS region transcription start site region 134315
Tssr134316 15 54278597 to 54278630 33 - TSS region transcription start site region 134316
Tssr134317 15 54278650 to 54278679 29 - TSS region transcription start site region 134317
Gm7566 15 54304565 to 54305134 569 - pseudogene predicted gene 7566
Gm5215 15 54311961 to 54312365 404 - pseudogene predicted gene 5215
Tssr134318 15 54312385 to 54312396 11 - TSS region transcription start site region 134318
Tssr131264 15 54410647 to 54410664 17 + TSS region transcription start site region 131264
Tssr131265 15 54410667 to 54410678 11 + TSS region transcription start site region 131265
Tssr131266 15 54410735 to 54410748 13 + TSS region transcription start site region 131266
Tssr131267 15 54410755 to 54410797 42 + TSS region transcription start site region 131267
Colec10 15 54410774 to 54466358 55584 + protein coding gene collectin sub-family member 10
Tssr131268 15 54410808 to 54410821 13 + TSS region transcription start site region 131268
Tssr131269 15 54435011 to 54435016 5 + TSS region transcription start site region 131269
Gm18152 15 54458700 to 54459280 580 - pseudogene predicted gene, 18152
Tssr134319 15 54481878 to 54481879 1 - TSS region transcription start site region 134319
Gm20070 15 54487900 to 54488126 226 + pseudogene predicted gene, 20070
Cpgi7091 15 54570997 to 54572035 1038 CpG island CpG island 7091
Tssr131270 15 54571179 to 54571213 34 + TSS region transcription start site region 131270
Tssr131271 15 54571340 to 54571357 17 + TSS region transcription start site region 131271
Tssr131272 15 54571358 to 54571439 81 + TSS region transcription start site region 131272
Mal2 15 54571366 to 54602846 31480 + protein coding gene mal, T cell differentiation protein 2
Tssr131273 15 54571470 to 54571507 37 + TSS region transcription start site region 131273
Tssr131274 15 54595187 to 54595191 4 + TSS region transcription start site region 131274
Tssr131275 15 54600730 to 54600737 7 + TSS region transcription start site region 131275
Tssr131276 15 54600860 to 54600867 7 + TSS region transcription start site region 131276
Tssr131277 15 54600891 to 54600910 19 + TSS region transcription start site region 131277
Tssr131278 15 54600923 to 54600928 5 + TSS region transcription start site region 131278
Tssr131279 15 54601036 to 54601040 4 + TSS region transcription start site region 131279
Tssr131280 15 54601615 to 54601653 38 + TSS region transcription start site region 131280