Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:5139306-6589419

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi6915 15 5143392 to 5144551 1159 CpG island CpG island 6915
Tssr130442 15 5143861 to 5143896 35 + TSS region transcription start site region 130442
Prkaa1 15 5143861 to 5181899 38038 + protein coding gene protein kinase, AMP-activated, alpha 1 catalytic subunit
Tssr130443 15 5153152 to 5153156 4 + TSS region transcription start site region 130443
Gm15938 15 5175085 to 5185723 10638 - antisense lncRNA gene predicted gene 15938
Tssr130444 15 5179748 to 5179765 17 + TSS region transcription start site region 130444
Tssr130445 15 5185519 to 5185552 33 + TSS region transcription start site region 130445
Ttc33 15 5185525 to 5218336 32811 + protein coding gene tetratricopeptide repeat domain 33
Cpgi6916 15 5185653 to 5186237 584 CpG island CpG island 6916
Tssr130446 15 5185700 to 5185742 42 + TSS region transcription start site region 130446
Gm15937 15 5209280 to 5210216 936 + pseudogene predicted gene 15937
Ptger4 15 5233399 to 5244187 10788 - protein coding gene prostaglandin E receptor 4 (subtype EP4)
Cpgi6917 15 5234861 to 5235091 230 CpG island CpG island 6917
Tssr130447 15 5237465 to 5237476 11 + TSS region transcription start site region 130447
Tssr130448 15 5237479 to 5237496 17 + TSS region transcription start site region 130448
Tssr130449 15 5237513 to 5237524 11 + TSS region transcription start site region 130449
Tssr130450 15 5242099 to 5242123 24 + TSS region transcription start site region 130450
Cpgi6918 15 5242118 to 5243306 1188 CpG island CpG island 6918
Cpgi6919 15 5243576 to 5244875 1299 CpG island CpG island 6919
Tssr133617 15 5244164 to 5244175 11 - TSS region transcription start site region 133617
Tssr133618 15 5244178 to 5244192 14 - TSS region transcription start site region 133618
Gm41257 15 5254639 to 5327713 73074 + lncRNA gene predicted gene, 41257
Gm49093 15 5280946 to 5281350 404 + pseudogene predicted gene, 49093
Gm2157 15 5301680 to 5302046 366 - pseudogene predicted gene 2157
Gm2150 15 5315333 to 5315861 528 - pseudogene predicted gene 2150
Tssr4543 15 5446495 to 5446504 9 - TSS region transcription start site region 4543
Gm46496 15 5464175 to 5464916 741 + pseudogene predicted gene, 46496
4930505O19Rik 15 5488619 to 5490182 1563 unclassified gene RIKEN cDNA 4930505O19 gene
Tssr130451 15 5495801 to 5495829 28 + TSS region transcription start site region 130451
Tssr130452 15 5496195 to 5496218 23 + TSS region transcription start site region 130452
5430437J10Rik 15 5496318 to 5594983 98665 + lincRNA gene RIKEN cDNA 5430437J10 gene
Tssr130453 15 5539556 to 5539562 6 + TSS region transcription start site region 130453
Tssr130454 15 5554747 to 5554756 9 + TSS region transcription start site region 130454
Gm20957 15 5580228 to 5580848 620 + pseudogene predicted gene, 20957
Gm41258 15 5675642 to 5704521 28879 + lncRNA gene predicted gene, 41258
Gm18715 15 5714034 to 5714303 269 + pseudogene predicted gene, 18715
Gm27760 15 5864306 to 5864419 113 + miRNA gene predicted gene, 27760
Gm8043 15 5866235 to 5867093 858 + pseudogene predicted gene 8043
Gm49095 15 5951444 to 5952359 915 + pseudogene predicted gene, 49095
Gm41259 15 6025192 to 6044779 19587 - lncRNA gene predicted gene, 41259
Gm8047 15 6034961 to 6035820 859 + pseudogene predicted gene 8047
Gm23139 15 6151217 to 6151348 131 - snoRNA gene predicted gene, 23139
Tssr130455 15 6299781 to 6299795 14 + TSS region transcription start site region 130455
Dab2 15 6299788 to 6440712 140924 + protein coding gene disabled 2, mitogen-responsive phosphoprotein
Tssr130456 15 6299797 to 6299851 54 + TSS region transcription start site region 130456
Tssr130457 15 6299857 to 6299868 11 + TSS region transcription start site region 130457
Tssr130458 15 6301308 to 6301319 11 + TSS region transcription start site region 130458
Gm16311 15 6303244 to 6309913 6669 - antisense lncRNA gene predicted gene 16311
Gm18888 15 6329240 to 6329876 636 - pseudogene predicted gene, 18888
Tssr130459 15 6380615 to 6380624 9 + TSS region transcription start site region 130459
Cpgi6920 15 6386264 to 6386956 692 CpG island CpG island 6920
Tssr130460 15 6386670 to 6386681 11 + TSS region transcription start site region 130460
Tssr130461 15 6386759 to 6386785 26 + TSS region transcription start site region 130461
Tssr130462 15 6386860 to 6386874 14 + TSS region transcription start site region 130462
Tssr130463 15 6387068 to 6387071 3 + TSS region transcription start site region 130463
Tssr130464 15 6391420 to 6391460 40 + TSS region transcription start site region 130464
Tssr130465 15 6392499 to 6392505 6 + TSS region transcription start site region 130465
Tssr130466 15 6407960 to 6407968 8 + TSS region transcription start site region 130466
Tssr130467 15 6417478 to 6417482 4 + TSS region transcription start site region 130467
Tssr130468 15 6422301 to 6422327 26 + TSS region transcription start site region 130468
Tssr130469 15 6424201 to 6424212 11 + TSS region transcription start site region 130469
Tssr130470 15 6424660 to 6424664 4 + TSS region transcription start site region 130470
Tssr130471 15 6428677 to 6428688 11 + TSS region transcription start site region 130471
Tssr130472 15 6429435 to 6429463 28 + TSS region transcription start site region 130472
Tssr130473 15 6429465 to 6429481 16 + TSS region transcription start site region 130473
Tssr130474 15 6429685 to 6429708 23 + TSS region transcription start site region 130474
Tssr130475 15 6429765 to 6429776 11 + TSS region transcription start site region 130475
Tssr130476 15 6429795 to 6429813 18 + TSS region transcription start site region 130476
Tssr133619 15 6429902 to 6429949 47 - TSS region transcription start site region 133619
Tssr130477 15 6431061 to 6431078 17 + TSS region transcription start site region 130477
Tssr130478 15 6435161 to 6435190 29 + TSS region transcription start site region 130478
Tssr133620 15 6435195 to 6435239 44 - TSS region transcription start site region 133620
Tssr130479 15 6435200 to 6435214 14 + TSS region transcription start site region 130479
Tssr130480 15 6435267 to 6435302 35 + TSS region transcription start site region 130480
Tssr130481 15 6435306 to 6435361 55 + TSS region transcription start site region 130481
Tssr133621 15 6435332 to 6435355 23 - TSS region transcription start site region 133621
Tssr130482 15 6435389 to 6435412 23 + TSS region transcription start site region 130482
Tssr130483 15 6435421 to 6435432 11 + TSS region transcription start site region 130483
Tssr130484 15 6435439 to 6435449 10 + TSS region transcription start site region 130484
Tssr130485 15 6435509 to 6435537 28 + TSS region transcription start site region 130485
Tssr130486 15 6435674 to 6435683 9 + TSS region transcription start site region 130486
Tssr130487 15 6438244 to 6438269 25 + TSS region transcription start site region 130487
Tssr130488 15 6438942 to 6438966 24 + TSS region transcription start site region 130488
Tssr130489 15 6438992 to 6439003 11 + TSS region transcription start site region 130489
Tssr130490 15 6439195 to 6439207 12 + TSS region transcription start site region 130490
Tssr130491 15 6439228 to 6439240 12 + TSS region transcription start site region 130491
Tssr130492 15 6439330 to 6439348 18 + TSS region transcription start site region 130492
Tssr130493 15 6445320 to 6445353 33 + TSS region transcription start site region 130493
C9 15 6445333 to 6498476 53143 + protein coding gene complement component 9
Tssr130494 15 6445363 to 6445376 13 + TSS region transcription start site region 130494
Gm23218 15 6500697 to 6500972 275 + unclassified non-coding RNA gene predicted gene, 23218
Tssr130495 15 6522789 to 6522867 78 + TSS region transcription start site region 130495
Fyb 15 6522853 to 6663313 140460 + protein coding gene FYN binding protein
Tssr130496 15 6540258 to 6540270 12 + TSS region transcription start site region 130496
Tssr130497 15 6540292 to 6540312 20 + TSS region transcription start site region 130497
Tssr130498 15 6540313 to 6540329 16 + TSS region transcription start site region 130498
Tssr130499 15 6540346 to 6540353 7 + TSS region transcription start site region 130499
Tssr130500 15 6547468 to 6547493 25 + TSS region transcription start site region 130500
Tssr130501 15 6552167 to 6552172 5 + TSS region transcription start site region 130501
Tssr133622 15 6555600 to 6555641 41 - TSS region transcription start site region 133622
Tssr133623 15 6565275 to 6565302 27 - TSS region transcription start site region 133623
Tssr133624 15 6565314 to 6565328 14 - TSS region transcription start site region 133624
Tssr130502 15 6569452 to 6569459 7 + TSS region transcription start site region 130502
Tssr130503 15 6569481 to 6569497 16 + TSS region transcription start site region 130503
Tssr130504 15 6569499 to 6569515 16 + TSS region transcription start site region 130504
Tssr130505 15 6569521 to 6569553 32 + TSS region transcription start site region 130505
Tssr130506 15 6569558 to 6569565 7 + TSS region transcription start site region 130506
Tssr130507 15 6574783 to 6574814 31 + TSS region transcription start site region 130507
Tssr130508 15 6578707 to 6578716 9 + TSS region transcription start site region 130508
Tssr130509 15 6579692 to 6579703 11 + TSS region transcription start site region 130509
Tssr130510 15 6579817 to 6579839 22 + TSS region transcription start site region 130510
Tssr130511 15 6579841 to 6579882 41 + TSS region transcription start site region 130511
Tssr130512 15 6579884 to 6579900 16 + TSS region transcription start site region 130512
Tssr130513 15 6579926 to 6579937 11 + TSS region transcription start site region 130513
Tssr130514 15 6579963 to 6579974 11 + TSS region transcription start site region 130514
Tssr130515 15 6579981 to 6579990 9 + TSS region transcription start site region 130515
Tssr130516 15 6580016 to 6580027 11 + TSS region transcription start site region 130516
Tssr130517 15 6580071 to 6580080 9 + TSS region transcription start site region 130517
Tssr130518 15 6580156 to 6580167 11 + TSS region transcription start site region 130518
Tssr130519 15 6580211 to 6580218 7 + TSS region transcription start site region 130519
Tssr130520 15 6580278 to 6580296 18 + TSS region transcription start site region 130520
Tssr130521 15 6580345 to 6580354 9 + TSS region transcription start site region 130521
Tssr130522 15 6580393 to 6580404 11 + TSS region transcription start site region 130522
Tssr130523 15 6580535 to 6580544 9 + TSS region transcription start site region 130523
Tssr130524 15 6580575 to 6580586 11 + TSS region transcription start site region 130524
Tssr130525 15 6580625 to 6580634 9 + TSS region transcription start site region 130525
Tssr130526 15 6580675 to 6580680 5 + TSS region transcription start site region 130526
Tssr130527 15 6580878 to 6580900 22 + TSS region transcription start site region 130527
Tssr130528 15 6580936 to 6580950 14 + TSS region transcription start site region 130528
Tssr130529 15 6580960 to 6580979 19 + TSS region transcription start site region 130529
Tssr130530 15 6580985 to 6580996 11 + TSS region transcription start site region 130530
Tssr130531 15 6581013 to 6581024 11 + TSS region transcription start site region 130531
Tssr130532 15 6581055 to 6581067 12 + TSS region transcription start site region 130532
Tssr133625 15 6581079 to 6581094 15 - TSS region transcription start site region 133625