Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:44500406-48670519

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia16 15 33497411 to 45277417 11780006 QTL cocaine induced activation 16
Pkhd1l1 15 44457494 to 44601369 143875 + protein coding gene polycystic kidney and hepatic disease 1-like 1
Cpgi7075 15 44618940 to 44619953 1013 CpG island CpG island 7075
Tssr131231 15 44619149 to 44619192 43 + TSS region transcription start site region 131231
Ebag9 15 44619175 to 44641515 22340 + protein coding gene estrogen receptor-binding fragment-associated gene 9
Tssr131232 15 44619224 to 44619242 18 + TSS region transcription start site region 131232
Tssr131233 15 44619271 to 44619328 57 + TSS region transcription start site region 131233
Tssr131234 15 44619551 to 44619630 79 + TSS region transcription start site region 131234
Tssr134198 15 44619910 to 44619912 2 - TSS region transcription start site region 134198
D15Mit182 15 44668521 to 44668737 216 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 182
Sybu 15 44671856 to 44788063 116207 - protein coding gene syntabulin (syntaxin-interacting)
Tssr134199 15 44691690 to 44691695 5 - TSS region transcription start site region 134199
Tssr134200 15 44706443 to 44706469 26 - TSS region transcription start site region 134200
Tssr134201 15 44706492 to 44706505 13 - TSS region transcription start site region 134201
2900046L07Rik 15 44716447 to 44718250 1803 unclassified gene RIKEN cDNA 2900046L07 gene
Tssr134202 15 44729015 to 44729020 5 - TSS region transcription start site region 134202
Tssr134203 15 44746574 to 44746597 23 - TSS region transcription start site region 134203
Cpgi7076 15 44748035 to 44749029 994 CpG island CpG island 7076
Tssr134204 15 44748361 to 44748377 16 - TSS region transcription start site region 134204
Tssr134205 15 44748397 to 44748408 11 - TSS region transcription start site region 134205
Tssr134206 15 44748422 to 44748442 20 - TSS region transcription start site region 134206
Tssr134207 15 44748444 to 44748483 39 - TSS region transcription start site region 134207
Gm33908 15 44748470 to 44752079 3609 + lncRNA gene predicted gene, 33908
Tssr134208 15 44752180 to 44752239 59 - TSS region transcription start site region 134208
Tssr134209 15 44752248 to 44752265 17 - TSS region transcription start site region 134209
Cpgi7077 15 44787389 to 44788153 764 CpG island CpG island 7077
Tssr131235 15 44787746 to 44787769 23 + TSS region transcription start site region 131235
2310069G16Rik 15 44787763 to 44805829 18066 + lncRNA gene RIKEN cDNA 2310069G16 gene
Tssr134210 15 44788016 to 44788031 15 - TSS region transcription start site region 134210
Gm33852 15 44818945 to 44837390 18445 - lncRNA gene predicted gene, 33852
D15Mit166 15 44849375 to 44849508 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 166
A930017M01Rik 15 44881394 to 44884743 3349 + pseudogene RIKEN cDNA A930017M01 gene
Gm24768 15 44940542 to 44940635 93 + snRNA gene predicted gene, 24768
Gm23343 15 44948104 to 44948246 142 + snoRNA gene predicted gene, 23343
Gm18153 15 44959340 to 44960361 1021 + pseudogene predicted gene, 18153
Gm5471 15 44971797 to 44972133 336 - pseudogene predicted pseudogene 5471
D15Mit114 15 45046677 to 45046814 137 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 114
Kcnv1 15 45106284 to 45114920 8636 - protein coding gene potassium channel, subfamily V, member 1
Cpgi7078 15 45114109 to 45114962 853 CpG island CpG island 7078
Tssr134211 15 45114441 to 45114461 20 - TSS region transcription start site region 134211
Tssr134212 15 45114660 to 45114676 16 - TSS region transcription start site region 134212
Tssr134213 15 45114863 to 45114872 9 - TSS region transcription start site region 134213
Tssr134214 15 45114896 to 45114908 12 - TSS region transcription start site region 134214
Tssr134215 15 45114926 to 45114938 12 - TSS region transcription start site region 134215
Lfibq26 15 45277417 to 51075548 5798131 QTL liver fibrosis QTL 26
Bsbob5 15 45419250 to 45419343 93 QTL BSB obesity 5
D15Mit152 15 45419250 to 45419343 93 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 152
Bpq6 15 45419250 to 45419343 93 QTL blood pressure QTL 6
Tssr4591 15 45583507 to 45583510 3 + TSS region transcription start site region 4591
D15Mit86 15 45616018 to 45616188 170 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 86
Tssr134216 15 45632374 to 45632417 43 - TSS region transcription start site region 134216
Gm2203 15 45962526 to 45963459 933 + pseudogene predicted gene 2203
Gm5472 15 45978360 to 45980037 1677 - pseudogene predicted gene 5472
Gm26063 15 46151698 to 46151804 106 - snRNA gene predicted gene, 26063
Gm49075 15 46178349 to 46178760 411 - pseudogene predicted gene, 49075
Gm41317 15 46226899 to 46324786 97887 - lncRNA gene predicted gene, 41317
Tssr131236 15 46324569 to 46324577 8 + TSS region transcription start site region 131236
Tssr131237 15 46324580 to 46324587 7 + TSS region transcription start site region 131237
1700022A22Rik 15 46324585 to 46373899 49314 + lincRNA gene RIKEN cDNA 1700022A22 gene
Tssr131238 15 46324591 to 46324602 11 + TSS region transcription start site region 131238
Gm23562 15 46434808 to 46434869 61 - miRNA gene predicted gene, 23562
4930523O13Rik 15 46435866 to 46496179 60313 - lincRNA gene RIKEN cDNA 4930523O13 gene
Gm49079 15 46438532 to 46438958 426 + pseudogene predicted gene, 49079
Tssr134217 15 46496152 to 46496161 9 - TSS region transcription start site region 134217
Tssr134218 15 46496162 to 46496187 25 - TSS region transcription start site region 134218
D15Mit58.1 15 46585406 to 46585519 113 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 58.1
D15Mit58 15 46585484 to 46585622 138 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 58
4930548G14Rik 15 46623305 to 46639858 16553 + lincRNA gene RIKEN cDNA 4930548G14 gene
Tssr131239 15 46623358 to 46623367 9 + TSS region transcription start site region 131239
Gm38541 15 46939070 to 46939886 816 + pseudogene predicted gene, 38541
Gm23665 15 46944387 to 46944448 61 - snRNA gene predicted gene, 23665
Gm7508 15 47421915 to 47422423 508 + pseudogene predicted gene 7508
Gm2267 15 47520351 to 47522638 2287 + pseudogene predicted gene 2267
Tssr131240 15 47520693 to 47520701 8 + TSS region transcription start site region 131240
Tssr131241 15 47539982 to 47539994 12 + TSS region transcription start site region 131241
Csmd3 15 47580637 to 48792063 1211426 - protein coding gene CUB and Sushi multiple domains 3
Gm16300 15 47699714 to 47703827 4113 - pseudogene predicted gene 16300
Gm23530 15 47800673 to 47800809 136 + snoRNA gene predicted gene, 23530
Gm18742 15 48163470 to 48164789 1319 + pseudogene predicted gene, 18742
Gm25007 15 48551308 to 48551440 132 + snRNA gene predicted gene, 25007