Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:42646793-43686803

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
Angpt1 15 42424723 to 42676977 252254 - protein coding gene angiopoietin 1
Gm41313 15 42631048 to 42666066 35018 - lncRNA gene predicted gene, 41313
Tssr134165 15 42676095 to 42676116 21 - TSS region transcription start site region 134165
Cpgi7068 15 42676208 to 42676460 252 CpG island CpG island 7068
Gm17473 15 42676241 to 42704616 28375 + antisense lncRNA gene predicted gene, 17473
Tssr134166 15 42676269 to 42676303 34 - TSS region transcription start site region 134166
Tssr134167 15 42676304 to 42676344 40 - TSS region transcription start site region 134167
Tssr134168 15 42676489 to 42676522 33 - TSS region transcription start site region 134168
Tssr134169 15 42676743 to 42676760 17 - TSS region transcription start site region 134169
Tssr134170 15 42676771 to 42676791 20 - TSS region transcription start site region 134170
Tssr134171 15 42676792 to 42676803 11 - TSS region transcription start site region 134171
Tssr134172 15 42676812 to 42676827 15 - TSS region transcription start site region 134172
Tssr134173 15 42676898 to 42676931 33 - TSS region transcription start site region 134173
Tssr134174 15 42676938 to 42676952 14 - TSS region transcription start site region 134174
Tssr134175 15 42676953 to 42676954 1 - TSS region transcription start site region 134175
Tssr134176 15 42676967 to 42676978 11 - TSS region transcription start site region 134176
Tssr134177 15 42680673 to 42680693 20 - TSS region transcription start site region 134177
Gm41314 15 42704755 to 42789365 84610 + lncRNA gene predicted gene, 41314
Gm46505 15 42874445 to 42983278 108833 - lncRNA gene predicted gene, 46505
Gm41315 15 42942348 to 42950929 8581 + lncRNA gene predicted gene, 41315
Tssr134178 15 43019122 to 43019131 9 - TSS region transcription start site region 134178
Rspo2 15 43020794 to 43170826 150032 - protein coding gene R-spondin 2
Tssr134179 15 43078155 to 43078182 27 - TSS region transcription start site region 134179
Tssr134180 15 43090430 to 43090434 4 - TSS region transcription start site region 134180
Tssr134181 15 43136046 to 43136048 2 - TSS region transcription start site region 134181
Tssr134182 15 43148777 to 43148780 3 - TSS region transcription start site region 134182
Tssr134183 15 43166793 to 43166803 10 - TSS region transcription start site region 134183
Tssr134184 15 43167085 to 43167090 5 - TSS region transcription start site region 134184
Cpgi7069 15 43169635 to 43170962 1327 CpG island CpG island 7069
Tssr134185 15 43170809 to 43170834 25 - TSS region transcription start site region 134185
Tssr134186 15 43170836 to 43170854 18 - TSS region transcription start site region 134186
Tssr134187 15 43170953 to 43170995 42 - TSS region transcription start site region 134187
Tssr134188 15 43171181 to 43171199 18 - TSS region transcription start site region 134188
D15Mit87 15 43172293 to 43172395 102 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 87
Tssr131220 15 43184427 to 43184435 8 + TSS region transcription start site region 131220
Gm9658 15 43217150 to 43218161 1011 - pseudogene predicted gene 9658
Gm22037 15 43224625 to 43224920 295 - unclassified non-coding RNA gene predicted gene, 22037
Eif3e 15 43250058 to 43282719 32661 - protein coding gene eukaryotic translation initiation factor 3, subunit E
Tssr134189 15 43265778 to 43265794 16 - TSS region transcription start site region 134189
Cpgi7070 15 43282232 to 43282893 661 CpG island CpG island 7070
Tssr134190 15 43282695 to 43282728 33 - TSS region transcription start site region 134190
Gm33743 15 43364405 to 43377497 13092 + lncRNA gene predicted gene, 33743
Gm49271 15 43368915 to 43377673 8758 - lincRNA gene predicted gene, 49271
Gm10373 15 43430943 to 43477036 46093 - lincRNA gene predicted gene 10373
Bgeq14 15 43448384 to 43448484 100 QTL body growth early QTL 14
Egrd2 15 43448384 to 43448484 100 QTL early growth rate, direct effect 2
D15Mit5 15 43448384 to 43448484 100 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 5
Bglq16 15 43448384 to 43448484 100 QTL body growth late QTL 16
Mbis3 15 43448384 to 43448484 100 QTL Mycobacterium bovis-induced systemic lupus erythematosus 3
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Cpgi7071 15 43477150 to 43477707 557 CpG island CpG island 7071
Tssr131221 15 43477213 to 43477270 57 + TSS region transcription start site region 131221
Emc2 15 43477229 to 43527763 50534 + protein coding gene ER membrane protein complex subunit 2
Gm41316 15 43502147 to 43503063 916 - lncRNA gene predicted gene, 41316
Tssr131222 15 43524057 to 43524061 4 + TSS region transcription start site region 131222
2900019E01Rik 15 43531500 to 43533210 1710 unclassified gene RIKEN cDNA 2900019E01 gene