Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:42156500-44908210

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
Bbaa31 15 41599176 to 43794128 2194952 QTL B.burgdorferi-associated arthritis 31
Gm49440 15 42161546 to 42161875 329 - pseudogene predicted gene, 49440
Gm49441 15 42196784 to 42201302 4518 + lincRNA gene predicted gene, 49441
Gm18531 15 42256063 to 42256780 717 - pseudogene predicted gene, 18531
Gm49452 15 42311265 to 42320346 9081 - lincRNA gene predicted gene, 49452
Gm18092 15 42328601 to 42329420 819 - pseudogene predicted gene, 18092
Gm49453 15 42399755 to 42400427 672 + pseudogene predicted gene, 49453
Angpt1 15 42424723 to 42676977 252254 - protein coding gene angiopoietin 1
Bdt6 15 42432410 to 42432532 122 QTL bone density traits 6
D15Mit206 15 42432410 to 42432532 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 206
Tssr134161 15 42472714 to 42472722 8 - TSS region transcription start site region 134161
Tssr131218 15 42479736 to 42479745 9 + TSS region transcription start site region 131218
Tssr134162 15 42571194 to 42571198 4 - TSS region transcription start site region 134162
Tssr134163 15 42585538 to 42585543 5 - TSS region transcription start site region 134163
Tssr134164 15 42586290 to 42586295 5 - TSS region transcription start site region 134164
Radsvq1 15 42621582 to 42621582 0 QTL radiation sensitivity QTL 1
Gm41313 15 42631048 to 42666066 35018 - lncRNA gene predicted gene, 41313
Tssr131219 15 42638820 to 42638832 12 + TSS region transcription start site region 131219
Tssr134165 15 42676095 to 42676116 21 - TSS region transcription start site region 134165
Cpgi7068 15 42676208 to 42676460 252 CpG island CpG island 7068
Gm17473 15 42676241 to 42704616 28375 + antisense lncRNA gene predicted gene, 17473
Tssr134166 15 42676269 to 42676303 34 - TSS region transcription start site region 134166
Tssr134167 15 42676304 to 42676344 40 - TSS region transcription start site region 134167
Tssr134168 15 42676489 to 42676522 33 - TSS region transcription start site region 134168
Tssr134169 15 42676743 to 42676760 17 - TSS region transcription start site region 134169
Tssr134170 15 42676771 to 42676791 20 - TSS region transcription start site region 134170
Tssr134171 15 42676792 to 42676803 11 - TSS region transcription start site region 134171
Tssr134172 15 42676812 to 42676827 15 - TSS region transcription start site region 134172
Tssr134173 15 42676898 to 42676931 33 - TSS region transcription start site region 134173
Tssr134174 15 42676938 to 42676952 14 - TSS region transcription start site region 134174
Tssr134175 15 42676953 to 42676954 1 - TSS region transcription start site region 134175
Tssr134176 15 42676967 to 42676978 11 - TSS region transcription start site region 134176
Tssr134177 15 42680673 to 42680693 20 - TSS region transcription start site region 134177
Gm41314 15 42704755 to 42789365 84610 + lncRNA gene predicted gene, 41314
Gm46505 15 42874445 to 42983278 108833 - lncRNA gene predicted gene, 46505
Gm41315 15 42942348 to 42950929 8581 + lncRNA gene predicted gene, 41315
Tssr134178 15 43019122 to 43019131 9 - TSS region transcription start site region 134178
Rspo2 15 43020794 to 43170826 150032 - protein coding gene R-spondin 2
Tssr134179 15 43078155 to 43078182 27 - TSS region transcription start site region 134179
Tssr134180 15 43090430 to 43090434 4 - TSS region transcription start site region 134180
Tssr134181 15 43136046 to 43136048 2 - TSS region transcription start site region 134181
Tssr134182 15 43148777 to 43148780 3 - TSS region transcription start site region 134182
Tssr134183 15 43166793 to 43166803 10 - TSS region transcription start site region 134183
Tssr134184 15 43167085 to 43167090 5 - TSS region transcription start site region 134184
Cpgi7069 15 43169635 to 43170962 1327 CpG island CpG island 7069
Tssr134185 15 43170809 to 43170834 25 - TSS region transcription start site region 134185
Tssr134186 15 43170836 to 43170854 18 - TSS region transcription start site region 134186
Tssr134187 15 43170953 to 43170995 42 - TSS region transcription start site region 134187
Tssr134188 15 43171181 to 43171199 18 - TSS region transcription start site region 134188
D15Mit87 15 43172293 to 43172395 102 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 87
Tssr131220 15 43184427 to 43184435 8 + TSS region transcription start site region 131220
Gm9658 15 43217150 to 43218161 1011 - pseudogene predicted gene 9658
Gm22037 15 43224625 to 43224920 295 - unclassified non-coding RNA gene predicted gene, 22037
Eif3e 15 43250058 to 43282719 32661 - protein coding gene eukaryotic translation initiation factor 3, subunit E
Tssr134189 15 43265778 to 43265794 16 - TSS region transcription start site region 134189
Cpgi7070 15 43282232 to 43282893 661 CpG island CpG island 7070
Tssr134190 15 43282695 to 43282728 33 - TSS region transcription start site region 134190
Gm33743 15 43364405 to 43377497 13092 + lncRNA gene predicted gene, 33743
Gm49271 15 43368915 to 43377673 8758 - lincRNA gene predicted gene, 49271
Gm10373 15 43430943 to 43477036 46093 - lincRNA gene predicted gene 10373
Egrd2 15 43448384 to 43448484 100 QTL early growth rate, direct effect 2
D15Mit5 15 43448384 to 43448484 100 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 5
Bgeq14 15 43448384 to 43448484 100 QTL body growth early QTL 14
Bglq16 15 43448384 to 43448484 100 QTL body growth late QTL 16
Mbis3 15 43448384 to 43448484 100 QTL Mycobacterium bovis-induced systemic lupus erythematosus 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3
Cpgi7071 15 43477150 to 43477707 557 CpG island CpG island 7071
Tssr131221 15 43477213 to 43477270 57 + TSS region transcription start site region 131221
Emc2 15 43477229 to 43527763 50534 + protein coding gene ER membrane protein complex subunit 2
Gm41316 15 43502147 to 43503063 916 - lncRNA gene predicted gene, 41316
Tssr131222 15 43524057 to 43524061 4 + TSS region transcription start site region 131222
2900019E01Rik 15 43531500 to 43533210 1710 unclassified gene RIKEN cDNA 2900019E01 gene
4933428L01Rik 15 43699539 to 43701034 1495 unclassified gene RIKEN cDNA 4933428L01 gene
9430087N24Rik 15 43733531 to 43734735 1204 unclassified gene RIKEN cDNA 9430087N24 gene
D15Mit227 15 43738625 to 43738749 124 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 227
D15Mit274 15 43783428 to 43783534 106 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-274
Tssr134191 15 43783981 to 43783984 3 - TSS region transcription start site region 134191
D15Mit154 15 43793979 to 43794128 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 154
Gm2140 15 43808461 to 43808924 463 + pseudogene predicted gene 2140
Tmem74 15 43866695 to 43870614 3919 - protein coding gene transmembrane protein 74
Cpgi7072 15 43869854 to 43870063 209 CpG island CpG island 7072
Tssr134192 15 43869971 to 43869976 5 - TSS region transcription start site region 134192
Tssr134193 15 43869993 to 43870058 65 - TSS region transcription start site region 134193
Tssr4590 15 43994585 to 43994587 2 - TSS region transcription start site region 4590
Tssr131223 15 44064197 to 44064203 6 + TSS region transcription start site region 131223
Trhr 15 44196135 to 44235912 39777 + protein coding gene thyrotropin releasing hormone receptor
D15Mit60 15 44264658 to 44264835 177 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 60
Gm33793 15 44265842 to 44267319 1477 - lncRNA gene predicted gene, 33793
Gm7459 15 44281981 to 44283775 1794 + pseudogene predicted gene 7459
D15Mit268 15 44306093 to 44306187 94 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 268
Gm19235 15 44323112 to 44324112 1000 + pseudogene predicted gene, 19235
Gm24903 15 44345650 to 44345775 125 + snoRNA gene predicted gene, 24903
Gm25093 15 44364085 to 44364216 131 + snoRNA gene predicted gene, 25093
Nudcd1 15 44375227 to 44428307 53080 - protein coding gene NudC domain containing 1
Tssr134194 15 44422670 to 44422671 1 - TSS region transcription start site region 134194
Cpgi7073 15 44427327 to 44428598 1271 CpG island CpG island 7073
Tssr131224 15 44427400 to 44427413 13 + TSS region transcription start site region 131224
Tssr134195 15 44427794 to 44427813 19 - TSS region transcription start site region 134195
Tssr134196 15 44427827 to 44427912 85 - TSS region transcription start site region 134196
Tssr131225 15 44428073 to 44428174 101 + TSS region transcription start site region 131225
Eny2 15 44428081 to 44438256 10175 + protein coding gene ENY2 transcription and export complex 2 subunit
Tssr134197 15 44428303 to 44428337 34 - TSS region transcription start site region 134197
Gm22392 15 44432595 to 44432701 106 + snRNA gene predicted gene, 22392
Cpgi7074 15 44457367 to 44457543 176 CpG island CpG island 7074
Tssr131226 15 44457423 to 44457434 11 + TSS region transcription start site region 131226
Tssr131227 15 44457445 to 44457486 41 + TSS region transcription start site region 131227
Tssr131228 15 44457491 to 44457496 5 + TSS region transcription start site region 131228
Pkhd1l1 15 44457494 to 44601369 143875 + protein coding gene polycystic kidney and hepatic disease 1-like 1
Tssr131229 15 44457498 to 44457517 19 + TSS region transcription start site region 131229
Tssr131230 15 44457522 to 44457534 12 + TSS region transcription start site region 131230
Cpgi7075 15 44618940 to 44619953 1013 CpG island CpG island 7075
Tssr131231 15 44619149 to 44619192 43 + TSS region transcription start site region 131231
Ebag9 15 44619175 to 44641515 22340 + protein coding gene estrogen receptor-binding fragment-associated gene 9
Tssr131232 15 44619224 to 44619242 18 + TSS region transcription start site region 131232
Tssr131233 15 44619271 to 44619328 57 + TSS region transcription start site region 131233
Tssr131234 15 44619551 to 44619630 79 + TSS region transcription start site region 131234
Tssr134198 15 44619910 to 44619912 2 - TSS region transcription start site region 134198
D15Mit182 15 44668521 to 44668737 216 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 182
Sybu 15 44671856 to 44788063 116207 - protein coding gene syntabulin (syntaxin-interacting)
Tssr134199 15 44691690 to 44691695 5 - TSS region transcription start site region 134199
Tssr134200 15 44706443 to 44706469 26 - TSS region transcription start site region 134200
Tssr134201 15 44706492 to 44706505 13 - TSS region transcription start site region 134201
2900046L07Rik 15 44716447 to 44718250 1803 unclassified gene RIKEN cDNA 2900046L07 gene
Tssr134202 15 44729015 to 44729020 5 - TSS region transcription start site region 134202
Tssr134203 15 44746574 to 44746597 23 - TSS region transcription start site region 134203
Cpgi7076 15 44748035 to 44749029 994 CpG island CpG island 7076
Tssr134204 15 44748361 to 44748377 16 - TSS region transcription start site region 134204
Tssr134205 15 44748397 to 44748408 11 - TSS region transcription start site region 134205
Tssr134206 15 44748422 to 44748442 20 - TSS region transcription start site region 134206
Tssr134207 15 44748444 to 44748483 39 - TSS region transcription start site region 134207
Gm33908 15 44748470 to 44752079 3609 + lncRNA gene predicted gene, 33908
Tssr134208 15 44752180 to 44752239 59 - TSS region transcription start site region 134208
Tssr134209 15 44752248 to 44752265 17 - TSS region transcription start site region 134209
Cpgi7077 15 44787389 to 44788153 764 CpG island CpG island 7077
Tssr131235 15 44787746 to 44787769 23 + TSS region transcription start site region 131235
2310069G16Rik 15 44787763 to 44805829 18066 + lncRNA gene RIKEN cDNA 2310069G16 gene
Tssr134210 15 44788016 to 44788031 15 - TSS region transcription start site region 134210
Gm33852 15 44818945 to 44837390 18445 - lncRNA gene predicted gene, 33852
D15Mit166 15 44849375 to 44849508 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 166
A930017M01Rik 15 44881394 to 44884743 3349 + pseudogene RIKEN cDNA A930017M01 gene