Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:4123741-6003758

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Oxct1 15 4026428 to 4155344 128916 + protein coding gene 3-oxoacid CoA transferase 1
Tssr4541 15 4164960 to 4164964 4 + TSS region transcription start site region 4541
D15Mit125 15 4202600 to 4202748 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 125
Gm49301 15 4244312 to 4244645 333 - pseudogene predicted gene, 49301
Tssr130431 15 4375462 to 4375511 49 + TSS region transcription start site region 130431
Cpgi6913 15 4375479 to 4376205 726 CpG island CpG island 6913
Plcxd3 15 4375491 to 4575553 200062 + protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 3
Tssr130432 15 4375574 to 4375623 49 + TSS region transcription start site region 130432
Tssr130433 15 4375626 to 4375656 30 + TSS region transcription start site region 130433
Tssr130434 15 4375658 to 4375679 21 + TSS region transcription start site region 130434
Tssr133599 15 4642969 to 4642972 3 - TSS region transcription start site region 133599
C6 15 4727067 to 4804045 76978 + protein coding gene complement component 6
Tssr130435 15 4727175 to 4727201 26 + TSS region transcription start site region 130435
Tssr130436 15 4727202 to 4727230 28 + TSS region transcription start site region 130436
Tssr130437 15 4727265 to 4727282 17 + TSS region transcription start site region 130437
Gm49073 15 4823357 to 4823667 310 - pseudogene predicted gene, 49073
Gm49074 15 4847387 to 4847711 324 + pseudogene predicted gene, 49074
Gm16374 15 4885120 to 4886118 998 + pseudogene predicted pseudogene 16374
Tssr130438 15 4898205 to 4898224 19 + TSS region transcription start site region 130438
Tssr130439 15 4898678 to 4898757 79 + TSS region transcription start site region 130439
Mroh2b 15 4898737 to 4962205 63468 + protein coding gene maestro heat-like repeat family member 2B
Tssr133600 15 4988350 to 4988367 17 - TSS region transcription start site region 133600
Tssr133601 15 4988505 to 4988518 13 - TSS region transcription start site region 133601
C7 15 4988762 to 5063740 74978 - protein coding gene complement component 7
Tssr133602 15 5010100 to 5010104 4 - TSS region transcription start site region 133602
Gm25652 15 5035360 to 5035462 102 + snRNA gene predicted gene, 25652
Tssr4542 15 5041803 to 5041804 1 + TSS region transcription start site region 4542
Tssr133603 15 5045995 to 5046000 5 - TSS region transcription start site region 133603
Tssr133604 15 5046044 to 5046058 14 - TSS region transcription start site region 133604
Tssr133605 15 5063741 to 5063758 17 - TSS region transcription start site region 133605
Gm16077 15 5092547 to 5093201 654 + pseudogene predicted gene 16077
Card6 15 5095981 to 5108539 12558 - protein coding gene caspase recruitment domain family, member 6
Tssr133606 15 5098913 to 5098934 21 - TSS region transcription start site region 133606
Tssr133607 15 5099125 to 5099155 30 - TSS region transcription start site region 133607
Tssr133608 15 5108173 to 5108196 23 - TSS region transcription start site region 133608
Tssr133609 15 5108367 to 5108374 7 - TSS region transcription start site region 133609
Tssr133610 15 5108381 to 5108405 24 - TSS region transcription start site region 133610
Tssr133611 15 5108424 to 5108433 9 - TSS region transcription start site region 133611
Tssr133612 15 5108445 to 5108459 14 - TSS region transcription start site region 133612
Tssr133613 15 5108469 to 5108490 21 - TSS region transcription start site region 133613
Tssr133614 15 5108492 to 5108565 73 - TSS region transcription start site region 133614
Cpgi6914 15 5116064 to 5117274 1210 CpG island CpG island 6914
Tssr133615 15 5116351 to 5116365 14 - TSS region transcription start site region 133615
Tssr130440 15 5116589 to 5116629 40 + TSS region transcription start site region 130440
Tssr130441 15 5116634 to 5116678 44 + TSS region transcription start site region 130441
Rpl37 15 5116645 to 5119140 2495 + protein coding gene ribosomal protein L37
Snord72 15 5118421 to 5118480 59 + snoRNA gene small nucleolar RNA, C/D box 72
Gm10250 15 5120654 to 5121135 481 - pseudogene predicted pseudogene 10250
Tssr133616 15 5121174 to 5121194 20 - TSS region transcription start site region 133616
Gm41256 15 5134031 to 5135280 1249 - lncRNA gene predicted gene, 41256
Cpgi6915 15 5143392 to 5144551 1159 CpG island CpG island 6915
Prkaa1 15 5143861 to 5181899 38038 + protein coding gene protein kinase, AMP-activated, alpha 1 catalytic subunit
Tssr130442 15 5143861 to 5143896 35 + TSS region transcription start site region 130442
Tssr130443 15 5153152 to 5153156 4 + TSS region transcription start site region 130443
Gm15938 15 5175085 to 5185723 10638 - antisense lncRNA gene predicted gene 15938
Tssr130444 15 5179748 to 5179765 17 + TSS region transcription start site region 130444
Tssr130445 15 5185519 to 5185552 33 + TSS region transcription start site region 130445
Ttc33 15 5185525 to 5218336 32811 + protein coding gene tetratricopeptide repeat domain 33
Cpgi6916 15 5185653 to 5186237 584 CpG island CpG island 6916
Tssr130446 15 5185700 to 5185742 42 + TSS region transcription start site region 130446
Gm15937 15 5209280 to 5210216 936 + pseudogene predicted gene 15937
Ptger4 15 5233399 to 5244187 10788 - protein coding gene prostaglandin E receptor 4 (subtype EP4)
Cpgi6917 15 5234861 to 5235091 230 CpG island CpG island 6917
Tssr130447 15 5237465 to 5237476 11 + TSS region transcription start site region 130447
Tssr130448 15 5237479 to 5237496 17 + TSS region transcription start site region 130448
Tssr130449 15 5237513 to 5237524 11 + TSS region transcription start site region 130449
Tssr130450 15 5242099 to 5242123 24 + TSS region transcription start site region 130450
Cpgi6918 15 5242118 to 5243306 1188 CpG island CpG island 6918
Cpgi6919 15 5243576 to 5244875 1299 CpG island CpG island 6919
Tssr133617 15 5244164 to 5244175 11 - TSS region transcription start site region 133617
Tssr133618 15 5244178 to 5244192 14 - TSS region transcription start site region 133618
Gm41257 15 5254639 to 5327713 73074 + lncRNA gene predicted gene, 41257
Gm49093 15 5280946 to 5281350 404 + pseudogene predicted gene, 49093
Gm2157 15 5301680 to 5302046 366 - pseudogene predicted gene 2157
Gm2150 15 5315333 to 5315861 528 - pseudogene predicted gene 2150
Tssr4543 15 5446495 to 5446504 9 - TSS region transcription start site region 4543
Gm46496 15 5464175 to 5464916 741 + pseudogene predicted gene, 46496
4930505O19Rik 15 5488619 to 5490182 1563 unclassified gene RIKEN cDNA 4930505O19 gene
Tssr130451 15 5495801 to 5495829 28 + TSS region transcription start site region 130451
Tssr130452 15 5496195 to 5496218 23 + TSS region transcription start site region 130452
5430437J10Rik 15 5496318 to 5594983 98665 + lincRNA gene RIKEN cDNA 5430437J10 gene
Tssr130453 15 5539556 to 5539562 6 + TSS region transcription start site region 130453
Tssr130454 15 5554747 to 5554756 9 + TSS region transcription start site region 130454
Gm20957 15 5580228 to 5580848 620 + pseudogene predicted gene, 20957
Gm41258 15 5675642 to 5704521 28879 + lncRNA gene predicted gene, 41258
Gm18715 15 5714034 to 5714303 269 + pseudogene predicted gene, 18715
Gm27760 15 5864306 to 5864419 113 + miRNA gene predicted gene, 27760
Gm8043 15 5866235 to 5867093 858 + pseudogene predicted gene 8043
Gm49095 15 5951444 to 5952359 915 + pseudogene predicted gene, 49095