Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:40946784-43451302

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
Zfpm2 15 40655035 to 41104592 449557 + protein coding gene zinc finger protein, multitype 2
Gm49526 15 40959757 to 40963701 3944 + unclassified gene predicted gene, 49526
Tssr131183 15 40969324 to 40969327 3 + TSS region transcription start site region 131183
Tssr131184 15 40993927 to 40993937 10 + TSS region transcription start site region 131184
Gm49524 15 40997960 to 40999204 1244 + unclassified gene predicted gene, 49524
Gm46502 15 41168411 to 41173832 5421 - lncRNA gene predicted gene, 46502
4930555K19Rik 15 41173487 to 41173868 381 + pseudogene RIKEN cDNA 4930555K19 gene
Tssr131185 15 41173659 to 41173687 28 + TSS region transcription start site region 131185
Gm49529 15 41242745 to 41243158 413 - pseudogene predicted gene, 49529
Gm33557 15 41256888 to 41300261 43373 - lncRNA gene predicted gene, 33557
Gm41312 15 41305297 to 41317440 12143 - lncRNA gene predicted gene, 41312
Tssr134155 15 41329672 to 41329677 5 - TSS region transcription start site region 134155
Tssr131186 15 41347428 to 41347463 35 + TSS region transcription start site region 131186
Tssr131187 15 41446823 to 41446835 12 + TSS region transcription start site region 131187
Cpgi7066 15 41446982 to 41448234 1252 CpG island CpG island 7066
Tssr131188 15 41447301 to 41447308 7 + TSS region transcription start site region 131188
Tssr131189 15 41447347 to 41447353 6 + TSS region transcription start site region 131189
Tssr131190 15 41447359 to 41447369 10 + TSS region transcription start site region 131190
Tssr131191 15 41447383 to 41447414 31 + TSS region transcription start site region 131191
Tssr131192 15 41447419 to 41447431 12 + TSS region transcription start site region 131192
Tssr131193 15 41447438 to 41447479 41 + TSS region transcription start site region 131193
Oxr1 15 41447482 to 41861048 413566 + protein coding gene oxidation resistance 1
Tssr131194 15 41447491 to 41447509 18 + TSS region transcription start site region 131194
Tssr131195 15 41447520 to 41447539 19 + TSS region transcription start site region 131195
Tssr134156 15 41448528 to 41448538 10 - TSS region transcription start site region 134156
Tssr131196 15 41487359 to 41487362 3 + TSS region transcription start site region 131196
Tssr4587 15 41504982 to 41504984 2 + TSS region transcription start site region 4587
Tssr131197 15 41511621 to 41511622 1 + TSS region transcription start site region 131197
Bbaa22 15 41599176 to 41599409 233 QTL B.burgdorferi-associated arthritis 22
D15Mit24 15 41599176 to 41599409 233 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 24
Bbaa31 15 41599176 to 43794128 2194952 QTL B.burgdorferi-associated arthritis 31
Tssr131198 15 41603315 to 41603328 13 + TSS region transcription start site region 131198
Tssr131199 15 41612576 to 41612587 11 + TSS region transcription start site region 131199
D15Mit229 15 41634759 to 41634866 107 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 229
Tssr131200 15 41710599 to 41710652 53 + TSS region transcription start site region 131200
Tssr131201 15 41710654 to 41710661 7 + TSS region transcription start site region 131201
Tssr4588 15 41751484 to 41751495 11 + TSS region transcription start site region 4588
Tssr131202 15 41751504 to 41751532 28 + TSS region transcription start site region 131202
Tssr131203 15 41751654 to 41751683 29 + TSS region transcription start site region 131203
Tssr131204 15 41751691 to 41751701 10 + TSS region transcription start site region 131204
Gm26854 15 41758060 to 41788911 30851 - antisense lncRNA gene predicted gene, 26854
Cpgi7067 15 41788394 to 41789704 1310 CpG island CpG island 7067
Tssr131205 15 41788766 to 41788778 12 + TSS region transcription start site region 131205
Tssr131206 15 41788934 to 41788977 43 + TSS region transcription start site region 131206
Tssr131207 15 41788979 to 41788988 9 + TSS region transcription start site region 131207
Tssr131208 15 41788997 to 41789013 16 + TSS region transcription start site region 131208
Tssr131209 15 41789495 to 41789527 32 + TSS region transcription start site region 131209
Tssr131210 15 41794484 to 41794489 5 + TSS region transcription start site region 131210
Tssr131211 15 41820120 to 41820142 22 + TSS region transcription start site region 131211
Tssr134157 15 41830763 to 41830770 7 - TSS region transcription start site region 134157
Tssr131212 15 41830921 to 41831001 80 + TSS region transcription start site region 131212
Tssr131213 15 41831007 to 41831018 11 + TSS region transcription start site region 131213
Tssr4589 15 41833455 to 41833459 4 + TSS region transcription start site region 4589
Tssr131214 15 41835114 to 41835125 11 + TSS region transcription start site region 131214
D15Mit255 15 41840768 to 41840892 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 255
Tssr131215 15 41847996 to 41848000 4 + TSS region transcription start site region 131215
Tssr131216 15 41848963 to 41848966 3 + TSS region transcription start site region 131216
Tssr131217 15 41859932 to 41859944 12 + TSS region transcription start site region 131217
Abra 15 41865293 to 41869720 4427 - protein coding gene actin-binding Rho activating protein
Tssr134158 15 41869692 to 41869701 9 - TSS region transcription start site region 134158
Tssr134159 15 41869703 to 41869727 24 - TSS region transcription start site region 134159
Gm5469 15 41922075 to 41922944 869 + pseudogene predicted gene 5469
Gm24751 15 41948997 to 41949098 101 + snoRNA gene predicted gene, 24751
Gm5470 15 42031319 to 42032742 1423 - pseudogene predicted gene 5470
Tssr134160 15 42033839 to 42033862 23 - TSS region transcription start site region 134160
Gm49439 15 42041425 to 42067553 26128 - lincRNA gene predicted gene, 49439
Gm49438 15 42055216 to 42056140 924 - unclassified gene predicted gene, 49438
Gm49440 15 42161546 to 42161875 329 - pseudogene predicted gene, 49440
Gm49441 15 42196784 to 42201302 4518 + lincRNA gene predicted gene, 49441
Gm18531 15 42256063 to 42256780 717 - pseudogene predicted gene, 18531
Gm49452 15 42311265 to 42320346 9081 - lincRNA gene predicted gene, 49452
Gm18092 15 42328601 to 42329420 819 - pseudogene predicted gene, 18092
Gm49453 15 42399755 to 42400427 672 + pseudogene predicted gene, 49453
Angpt1 15 42424723 to 42676977 252254 - protein coding gene angiopoietin 1
Bdt6 15 42432410 to 42432532 122 QTL bone density traits 6
D15Mit206 15 42432410 to 42432532 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 206
Tssr134161 15 42472714 to 42472722 8 - TSS region transcription start site region 134161
Tssr131218 15 42479736 to 42479745 9 + TSS region transcription start site region 131218
Tssr134162 15 42571194 to 42571198 4 - TSS region transcription start site region 134162
Tssr134163 15 42585538 to 42585543 5 - TSS region transcription start site region 134163
Tssr134164 15 42586290 to 42586295 5 - TSS region transcription start site region 134164
Radsvq1 15 42621582 to 42621582 0 QTL radiation sensitivity QTL 1
Gm41313 15 42631048 to 42666066 35018 - lncRNA gene predicted gene, 41313
Tssr131219 15 42638820 to 42638832 12 + TSS region transcription start site region 131219
Tssr134165 15 42676095 to 42676116 21 - TSS region transcription start site region 134165
Cpgi7068 15 42676208 to 42676460 252 CpG island CpG island 7068
Gm17473 15 42676241 to 42704616 28375 + antisense lncRNA gene predicted gene, 17473
Tssr134166 15 42676269 to 42676303 34 - TSS region transcription start site region 134166
Tssr134167 15 42676304 to 42676344 40 - TSS region transcription start site region 134167
Tssr134168 15 42676489 to 42676522 33 - TSS region transcription start site region 134168
Tssr134169 15 42676743 to 42676760 17 - TSS region transcription start site region 134169
Tssr134170 15 42676771 to 42676791 20 - TSS region transcription start site region 134170
Tssr134171 15 42676792 to 42676803 11 - TSS region transcription start site region 134171
Tssr134172 15 42676812 to 42676827 15 - TSS region transcription start site region 134172
Tssr134173 15 42676898 to 42676931 33 - TSS region transcription start site region 134173
Tssr134174 15 42676938 to 42676952 14 - TSS region transcription start site region 134174
Tssr134175 15 42676953 to 42676954 1 - TSS region transcription start site region 134175
Tssr134176 15 42676967 to 42676978 11 - TSS region transcription start site region 134176
Tssr134177 15 42680673 to 42680693 20 - TSS region transcription start site region 134177
Gm41314 15 42704755 to 42789365 84610 + lncRNA gene predicted gene, 41314
Gm46505 15 42874445 to 42983278 108833 - lncRNA gene predicted gene, 46505
Gm41315 15 42942348 to 42950929 8581 + lncRNA gene predicted gene, 41315
Tssr134178 15 43019122 to 43019131 9 - TSS region transcription start site region 134178
Rspo2 15 43020794 to 43170826 150032 - protein coding gene R-spondin 2
Tssr134179 15 43078155 to 43078182 27 - TSS region transcription start site region 134179
Tssr134180 15 43090430 to 43090434 4 - TSS region transcription start site region 134180
Tssr134181 15 43136046 to 43136048 2 - TSS region transcription start site region 134181
Tssr134182 15 43148777 to 43148780 3 - TSS region transcription start site region 134182
Tssr134183 15 43166793 to 43166803 10 - TSS region transcription start site region 134183
Tssr134184 15 43167085 to 43167090 5 - TSS region transcription start site region 134184
Cpgi7069 15 43169635 to 43170962 1327 CpG island CpG island 7069
Tssr134185 15 43170809 to 43170834 25 - TSS region transcription start site region 134185
Tssr134186 15 43170836 to 43170854 18 - TSS region transcription start site region 134186
Tssr134187 15 43170953 to 43170995 42 - TSS region transcription start site region 134187
Tssr134188 15 43171181 to 43171199 18 - TSS region transcription start site region 134188
D15Mit87 15 43172293 to 43172395 102 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 87
Tssr131220 15 43184427 to 43184435 8 + TSS region transcription start site region 131220
Gm9658 15 43217150 to 43218161 1011 - pseudogene predicted gene 9658
Gm22037 15 43224625 to 43224920 295 - unclassified non-coding RNA gene predicted gene, 22037
Eif3e 15 43250058 to 43282719 32661 - protein coding gene eukaryotic translation initiation factor 3, subunit E
Tssr134189 15 43265778 to 43265794 16 - TSS region transcription start site region 134189
Cpgi7070 15 43282232 to 43282893 661 CpG island CpG island 7070
Tssr134190 15 43282695 to 43282728 33 - TSS region transcription start site region 134190
Gm33743 15 43364405 to 43377497 13092 + lncRNA gene predicted gene, 33743
Gm49271 15 43368915 to 43377673 8758 - lincRNA gene predicted gene, 49271
Gm10373 15 43430943 to 43477036 46093 - lincRNA gene predicted gene 10373
Bgeq14 15 43448384 to 43448484 100 QTL body growth early QTL 14
Egrd2 15 43448384 to 43448484 100 QTL early growth rate, direct effect 2
D15Mit5 15 43448384 to 43448484 100 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 5
Bglq16 15 43448384 to 43448484 100 QTL body growth late QTL 16
Mbis3 15 43448384 to 43448484 100 QTL Mycobacterium bovis-induced systemic lupus erythematosus 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3