Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:40145921-43516001

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
9330182O14Rik 15 40134365 to 40150010 15645 + protein coding gene RIKEN cDNA 9330182O14 gene
D15Mit84 15 40156045 to 40156206 161 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 84
Lore5 15 40156045 to 58158901 18002856 QTL loss of righting induced by ethanol 5
Gm33301 15 40162603 to 40168076 5473 + lincRNA gene predicted gene, 33301
Tssr131169 15 40162616 to 40162629 13 + TSS region transcription start site region 131169
Gm25958 15 40186029 to 40186099 70 - miRNA gene predicted gene, 25958
D15Mit120 15 40280802 to 40280941 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 120
D15Mit85 15 40313626 to 40313821 195 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 85
Lfnq3 15 40313626 to 72500731 32187105 QTL lung function QTL 3
Gm41311 15 40343266 to 40350865 7599 + lincRNA gene predicted gene, 41311
Gm16294 15 40511322 to 40527277 15955 - lincRNA gene predicted gene 16294
Gm33431 15 40529209 to 40654155 124946 - lncRNA gene predicted gene, 33431
Gm7382 15 40537321 to 40538425 1104 + pseudogene predicted gene 7382
Cpgi7065 15 40654370 to 40656226 1856 CpG island CpG island 7065
Tssr131170 15 40654881 to 40654891 10 + TSS region transcription start site region 131170
Tssr131171 15 40654912 to 40654921 9 + TSS region transcription start site region 131171
Tssr131172 15 40654994 to 40655004 10 + TSS region transcription start site region 131172
Tssr131173 15 40655020 to 40655054 34 + TSS region transcription start site region 131173
Zfpm2 15 40655035 to 41104592 449557 + protein coding gene zinc finger protein, multitype 2
Tssr131174 15 40655069 to 40655082 13 + TSS region transcription start site region 131174
Tssr131175 15 40655208 to 40655225 17 + TSS region transcription start site region 131175
Tssr131176 15 40655259 to 40655266 7 + TSS region transcription start site region 131176
Tssr4586 15 40655295 to 40655302 7 + TSS region transcription start site region 4586
Tssr131177 15 40655308 to 40655321 13 + TSS region transcription start site region 131177
Tssr131178 15 40655337 to 40655357 20 + TSS region transcription start site region 131178
Tssr131179 15 40658186 to 40658193 7 + TSS region transcription start site region 131179
Gm18285 15 40670309 to 40671036 727 + pseudogene predicted gene, 18285
Tssr131180 15 40682086 to 40682095 9 + TSS region transcription start site region 131180
Gm6045 15 40682092 to 40682824 732 + pseudogene predicted gene 6045
Gm33353 15 40735356 to 40741929 6573 - lncRNA gene predicted gene, 33353
Tssr131181 15 40735375 to 40735378 3 + TSS region transcription start site region 131181
Tssr131182 15 40877482 to 40877485 3 + TSS region transcription start site region 131182
Gm49525 15 40907565 to 40908987 1422 + unclassified gene predicted gene, 49525
Gm49526 15 40959757 to 40963701 3944 + unclassified gene predicted gene, 49526
Tssr131183 15 40969324 to 40969327 3 + TSS region transcription start site region 131183
Tssr131184 15 40993927 to 40993937 10 + TSS region transcription start site region 131184
Gm49524 15 40997960 to 40999204 1244 + unclassified gene predicted gene, 49524
Gm46502 15 41168411 to 41173832 5421 - lncRNA gene predicted gene, 46502
4930555K19Rik 15 41173487 to 41173868 381 + pseudogene RIKEN cDNA 4930555K19 gene
Tssr131185 15 41173659 to 41173687 28 + TSS region transcription start site region 131185
Gm49529 15 41242745 to 41243158 413 - pseudogene predicted gene, 49529
Gm33557 15 41256888 to 41300261 43373 - lncRNA gene predicted gene, 33557
Gm41312 15 41305297 to 41317440 12143 - lncRNA gene predicted gene, 41312
Tssr134155 15 41329672 to 41329677 5 - TSS region transcription start site region 134155
Tssr131186 15 41347428 to 41347463 35 + TSS region transcription start site region 131186
Tssr131187 15 41446823 to 41446835 12 + TSS region transcription start site region 131187
Cpgi7066 15 41446982 to 41448234 1252 CpG island CpG island 7066
Tssr131188 15 41447301 to 41447308 7 + TSS region transcription start site region 131188
Tssr131189 15 41447347 to 41447353 6 + TSS region transcription start site region 131189
Tssr131190 15 41447359 to 41447369 10 + TSS region transcription start site region 131190
Tssr131191 15 41447383 to 41447414 31 + TSS region transcription start site region 131191
Tssr131192 15 41447419 to 41447431 12 + TSS region transcription start site region 131192
Tssr131193 15 41447438 to 41447479 41 + TSS region transcription start site region 131193
Oxr1 15 41447482 to 41861048 413566 + protein coding gene oxidation resistance 1
Tssr131194 15 41447491 to 41447509 18 + TSS region transcription start site region 131194
Tssr131195 15 41447520 to 41447539 19 + TSS region transcription start site region 131195
Tssr134156 15 41448528 to 41448538 10 - TSS region transcription start site region 134156
Tssr131196 15 41487359 to 41487362 3 + TSS region transcription start site region 131196
Tssr4587 15 41504982 to 41504984 2 + TSS region transcription start site region 4587
Tssr131197 15 41511621 to 41511622 1 + TSS region transcription start site region 131197
Bbaa31 15 41599176 to 43794128 2194952 QTL B.burgdorferi-associated arthritis 31
D15Mit24 15 41599176 to 41599409 233 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 24
Bbaa22 15 41599176 to 41599409 233 QTL B.burgdorferi-associated arthritis 22
Tssr131198 15 41603315 to 41603328 13 + TSS region transcription start site region 131198
Tssr131199 15 41612576 to 41612587 11 + TSS region transcription start site region 131199
D15Mit229 15 41634759 to 41634866 107 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 229
Tssr131200 15 41710599 to 41710652 53 + TSS region transcription start site region 131200
Tssr131201 15 41710654 to 41710661 7 + TSS region transcription start site region 131201
Tssr4588 15 41751484 to 41751495 11 + TSS region transcription start site region 4588
Tssr131202 15 41751504 to 41751532 28 + TSS region transcription start site region 131202
Tssr131203 15 41751654 to 41751683 29 + TSS region transcription start site region 131203
Tssr131204 15 41751691 to 41751701 10 + TSS region transcription start site region 131204
Gm26854 15 41758060 to 41788911 30851 - antisense lncRNA gene predicted gene, 26854
Cpgi7067 15 41788394 to 41789704 1310 CpG island CpG island 7067
Tssr131205 15 41788766 to 41788778 12 + TSS region transcription start site region 131205
Tssr131206 15 41788934 to 41788977 43 + TSS region transcription start site region 131206
Tssr131207 15 41788979 to 41788988 9 + TSS region transcription start site region 131207
Tssr131208 15 41788997 to 41789013 16 + TSS region transcription start site region 131208
Tssr131209 15 41789495 to 41789527 32 + TSS region transcription start site region 131209
Tssr131210 15 41794484 to 41794489 5 + TSS region transcription start site region 131210
Tssr131211 15 41820120 to 41820142 22 + TSS region transcription start site region 131211
Tssr134157 15 41830763 to 41830770 7 - TSS region transcription start site region 134157
Tssr131212 15 41830921 to 41831001 80 + TSS region transcription start site region 131212
Tssr131213 15 41831007 to 41831018 11 + TSS region transcription start site region 131213
Tssr4589 15 41833455 to 41833459 4 + TSS region transcription start site region 4589
Tssr131214 15 41835114 to 41835125 11 + TSS region transcription start site region 131214
D15Mit255 15 41840768 to 41840892 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 255
Tssr131215 15 41847996 to 41848000 4 + TSS region transcription start site region 131215
Tssr131216 15 41848963 to 41848966 3 + TSS region transcription start site region 131216
Tssr131217 15 41859932 to 41859944 12 + TSS region transcription start site region 131217
Abra 15 41865293 to 41869720 4427 - protein coding gene actin-binding Rho activating protein
Tssr134158 15 41869692 to 41869701 9 - TSS region transcription start site region 134158
Tssr134159 15 41869703 to 41869727 24 - TSS region transcription start site region 134159
Gm5469 15 41922075 to 41922944 869 + pseudogene predicted gene 5469
Gm24751 15 41948997 to 41949098 101 + snoRNA gene predicted gene, 24751
Gm5470 15 42031319 to 42032742 1423 - pseudogene predicted gene 5470
Tssr134160 15 42033839 to 42033862 23 - TSS region transcription start site region 134160
Gm49439 15 42041425 to 42067553 26128 - lincRNA gene predicted gene, 49439
Gm49438 15 42055216 to 42056140 924 - unclassified gene predicted gene, 49438
Gm49440 15 42161546 to 42161875 329 - pseudogene predicted gene, 49440
Gm49441 15 42196784 to 42201302 4518 + lincRNA gene predicted gene, 49441
Gm18531 15 42256063 to 42256780 717 - pseudogene predicted gene, 18531
Gm49452 15 42311265 to 42320346 9081 - lincRNA gene predicted gene, 49452
Gm18092 15 42328601 to 42329420 819 - pseudogene predicted gene, 18092
Gm49453 15 42399755 to 42400427 672 + pseudogene predicted gene, 49453
Angpt1 15 42424723 to 42676977 252254 - protein coding gene angiopoietin 1
Bdt6 15 42432410 to 42432532 122 QTL bone density traits 6
D15Mit206 15 42432410 to 42432532 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 206
Tssr134161 15 42472714 to 42472722 8 - TSS region transcription start site region 134161
Tssr131218 15 42479736 to 42479745 9 + TSS region transcription start site region 131218
Tssr134162 15 42571194 to 42571198 4 - TSS region transcription start site region 134162
Tssr134163 15 42585538 to 42585543 5 - TSS region transcription start site region 134163
Tssr134164 15 42586290 to 42586295 5 - TSS region transcription start site region 134164
Radsvq1 15 42621582 to 42621582 0 QTL radiation sensitivity QTL 1
Gm41313 15 42631048 to 42666066 35018 - lncRNA gene predicted gene, 41313
Tssr131219 15 42638820 to 42638832 12 + TSS region transcription start site region 131219
Tssr134165 15 42676095 to 42676116 21 - TSS region transcription start site region 134165
Cpgi7068 15 42676208 to 42676460 252 CpG island CpG island 7068
Gm17473 15 42676241 to 42704616 28375 + antisense lncRNA gene predicted gene, 17473
Tssr134166 15 42676269 to 42676303 34 - TSS region transcription start site region 134166
Tssr134167 15 42676304 to 42676344 40 - TSS region transcription start site region 134167
Tssr134168 15 42676489 to 42676522 33 - TSS region transcription start site region 134168
Tssr134169 15 42676743 to 42676760 17 - TSS region transcription start site region 134169
Tssr134170 15 42676771 to 42676791 20 - TSS region transcription start site region 134170
Tssr134171 15 42676792 to 42676803 11 - TSS region transcription start site region 134171
Tssr134172 15 42676812 to 42676827 15 - TSS region transcription start site region 134172
Tssr134173 15 42676898 to 42676931 33 - TSS region transcription start site region 134173
Tssr134174 15 42676938 to 42676952 14 - TSS region transcription start site region 134174
Tssr134175 15 42676953 to 42676954 1 - TSS region transcription start site region 134175
Tssr134176 15 42676967 to 42676978 11 - TSS region transcription start site region 134176
Tssr134177 15 42680673 to 42680693 20 - TSS region transcription start site region 134177
Gm41314 15 42704755 to 42789365 84610 + lncRNA gene predicted gene, 41314
Gm46505 15 42874445 to 42983278 108833 - lncRNA gene predicted gene, 46505
Gm41315 15 42942348 to 42950929 8581 + lncRNA gene predicted gene, 41315
Tssr134178 15 43019122 to 43019131 9 - TSS region transcription start site region 134178
Rspo2 15 43020794 to 43170826 150032 - protein coding gene R-spondin 2
Tssr134179 15 43078155 to 43078182 27 - TSS region transcription start site region 134179
Tssr134180 15 43090430 to 43090434 4 - TSS region transcription start site region 134180
Tssr134181 15 43136046 to 43136048 2 - TSS region transcription start site region 134181
Tssr134182 15 43148777 to 43148780 3 - TSS region transcription start site region 134182
Tssr134183 15 43166793 to 43166803 10 - TSS region transcription start site region 134183
Tssr134184 15 43167085 to 43167090 5 - TSS region transcription start site region 134184
Cpgi7069 15 43169635 to 43170962 1327 CpG island CpG island 7069
Tssr134185 15 43170809 to 43170834 25 - TSS region transcription start site region 134185
Tssr134186 15 43170836 to 43170854 18 - TSS region transcription start site region 134186
Tssr134187 15 43170953 to 43170995 42 - TSS region transcription start site region 134187
Tssr134188 15 43171181 to 43171199 18 - TSS region transcription start site region 134188
D15Mit87 15 43172293 to 43172395 102 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 87
Tssr131220 15 43184427 to 43184435 8 + TSS region transcription start site region 131220
Gm9658 15 43217150 to 43218161 1011 - pseudogene predicted gene 9658
Gm22037 15 43224625 to 43224920 295 - unclassified non-coding RNA gene predicted gene, 22037
Eif3e 15 43250058 to 43282719 32661 - protein coding gene eukaryotic translation initiation factor 3, subunit E
Tssr134189 15 43265778 to 43265794 16 - TSS region transcription start site region 134189
Cpgi7070 15 43282232 to 43282893 661 CpG island CpG island 7070
Tssr134190 15 43282695 to 43282728 33 - TSS region transcription start site region 134190
Gm33743 15 43364405 to 43377497 13092 + lncRNA gene predicted gene, 33743
Gm49271 15 43368915 to 43377673 8758 - lincRNA gene predicted gene, 49271
Gm10373 15 43430943 to 43477036 46093 - lincRNA gene predicted gene 10373
D15Mit5 15 43448384 to 43448484 100 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 5
Bglq16 15 43448384 to 43448484 100 QTL body growth late QTL 16
Bgeq14 15 43448384 to 43448484 100 QTL body growth early QTL 14
Egrd2 15 43448384 to 43448484 100 QTL early growth rate, direct effect 2
Mbis3 15 43448384 to 43448484 100 QTL Mycobacterium bovis-induced systemic lupus erythematosus 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3
Cpgi7071 15 43477150 to 43477707 557 CpG island CpG island 7071
Tssr131221 15 43477213 to 43477270 57 + TSS region transcription start site region 131221
Emc2 15 43477229 to 43527763 50534 + protein coding gene ER membrane protein complex subunit 2
Gm41316 15 43502147 to 43503063 916 - lncRNA gene predicted gene, 41316