Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:38281773-39872439

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Klf10 15 38291463 to 38300706 9243 - protein coding gene Kruppel-like factor 10
Tssr134123 15 38294979 to 38294983 4 - TSS region transcription start site region 134123
Cpgi7049 15 38298873 to 38301994 3121 CpG island CpG island 7049
Tssr131113 15 38299357 to 38299366 9 + TSS region transcription start site region 131113
Tssr131114 15 38299508 to 38299514 6 + TSS region transcription start site region 131114
Tssr134124 15 38299690 to 38299693 3 - TSS region transcription start site region 134124
Tssr4579 15 38300285 to 38300289 4 + TSS region transcription start site region 4579
Tssr131115 15 38300392 to 38300393 1 + TSS region transcription start site region 131115
Tssr134125 15 38300660 to 38300671 11 - TSS region transcription start site region 134125
Tssr134126 15 38300693 to 38300715 22 - TSS region transcription start site region 134126
Tssr131116 15 38301192 to 38301220 28 + TSS region transcription start site region 131116
Gm35248 15 38312293 to 38343139 30846 + lincRNA gene predicted gene, 35248
Tssr4580 15 38322202 to 38322209 7 + TSS region transcription start site region 4580
Gm41306 15 38357342 to 38366081 8739 - lncRNA gene predicted gene, 41306
Cpgi7050 15 38373758 to 38374122 364 CpG island CpG island 7050
Cpgi7051 15 38384592 to 38384853 261 CpG island CpG island 7051
Gm26863 15 38384981 to 38386300 1319 + lincRNA gene predicted gene, 26863
Gm41307 15 38385634 to 38404154 18520 - lincRNA gene predicted gene, 41307
G930009F23Rik 15 38441989 to 38455508 13519 - lincRNA gene RIKEN cDNA G930009F23 gene
Tssr134127 15 38455120 to 38455139 19 - TSS region transcription start site region 134127
Tssr134128 15 38455157 to 38455171 14 - TSS region transcription start site region 134128
Tssr134129 15 38455241 to 38455266 25 - TSS region transcription start site region 134129
Tssr131117 15 38455369 to 38455383 14 + TSS region transcription start site region 131117
Cpgi7052 15 38470230 to 38471658 1428 CpG island CpG island 7052
Tssr131118 15 38470723 to 38470757 34 + TSS region transcription start site region 131118
Gm41308 15 38473228 to 38478270 5042 + lncRNA gene predicted gene, 41308
Cpgi7053 15 38473422 to 38473996 574 CpG island CpG island 7053
Tssr134130 15 38473721 to 38473732 11 - TSS region transcription start site region 134130
Azin1 15 38487427 to 38519266 31839 - protein coding gene antizyme inhibitor 1
Mir6951 15 38490473 to 38490547 74 - miRNA gene microRNA 6951
Tssr4581 15 38514825 to 38514830 5 - TSS region transcription start site region 4581
Cpgi7054 15 38518050 to 38519918 1868 CpG island CpG island 7054
Tssr134131 15 38518191 to 38518212 21 - TSS region transcription start site region 134131
Tssr134132 15 38518213 to 38518230 17 - TSS region transcription start site region 134132
Tssr131119 15 38518508 to 38518513 5 + TSS region transcription start site region 131119
Tssr131120 15 38518743 to 38518796 53 + TSS region transcription start site region 131120
Gm49077 15 38518786 to 38520051 1265 + antisense lncRNA gene predicted gene, 49077
Tssr134133 15 38519255 to 38519271 16 - TSS region transcription start site region 134133
Tssr131121 15 38544143 to 38544156 13 + TSS region transcription start site region 131121
D15Mit6.1 15 38544542 to 38544655 113 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 6.1
D15Mit6 15 38544641 to 38544767 126 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 6
2310043O21Rik 15 38549344 to 38594934 45590 - lincRNA gene RIKEN cDNA 2310043O21 gene
Gm41309 15 38568522 to 38602342 33820 - lncRNA gene predicted gene, 41309
Tssr4582 15 38570767 to 38570774 7 - TSS region transcription start site region 4582
Gm29697 15 38573996 to 38577707 3711 + pseudogene predicted gene, 29697
Gm49090 15 38574719 to 38574824 105 - pseudogene predicted gene, 49090
Siah1-ps2 15 38575805 to 38576649 844 - pseudogene siah E3 ubiquitin protein ligase 1, pseudogene 2
D15Mit112 15 38584051 to 38584182 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 112
D15Mit254 15 38604641 to 38604854 213 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 254
Tssr134134 15 38633432 to 38633439 7 - TSS region transcription start site region 134134
Tssr4583 15 38634712 to 38634721 9 + TSS region transcription start site region 4583
1100001I12Rik 15 38640946 to 38647681 6735 - lincRNA gene RIKEN cDNA 1100001I12 gene
Tssr131122 15 38644405 to 38644411 6 + TSS region transcription start site region 131122
Cpgi7055 15 38661639 to 38662489 850 CpG island CpG island 7055
Tssr131123 15 38661905 to 38661912 7 + TSS region transcription start site region 131123
Tssr131124 15 38661914 to 38661981 67 + TSS region transcription start site region 131124
Atp6v1c1 15 38661933 to 38692446 30513 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit C1
Tssr131125 15 38661985 to 38661999 14 + TSS region transcription start site region 131125
Tssr131126 15 38673892 to 38673931 39 + TSS region transcription start site region 131126
Tssr131127 15 38686464 to 38686469 5 + TSS region transcription start site region 131127
Tssr131128 15 38691616 to 38691640 24 + TSS region transcription start site region 131128
Tssr134135 15 38709787 to 38709801 14 - TSS region transcription start site region 134135
Tssr4584 15 38710690 to 38710730 40 + TSS region transcription start site region 4584
Gm45924 15 38713483 to 38728516 15033 - lincRNA gene predicted gene, 45924
D15Mit1007 15 38722884 to 38723083 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1007
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
Gm49097 15 38933071 to 38938622 5551 - antisense lncRNA gene predicted gene, 49097
Baalc 15 38933909 to 38952917 19008 + protein coding gene brain and acute leukemia, cytoplasmic
Tssr131129 15 38951116 to 38951123 7 + TSS region transcription start site region 131129
Gm33123 15 38978235 to 38979365 1130 - lncRNA gene predicted gene, 33123
Cpgi7056 15 38989946 to 38990800 854 CpG island CpG island 7056
Gm4740 15 38990234 to 38992007 1773 + pseudogene predicted gene 4740
Tssr131130 15 38999442 to 38999450 8 + TSS region transcription start site region 131130
Gm26704 15 39003757 to 39006108 2351 - bidirectional promoter lncRNA gene predicted gene, 26704
Cpgi7057 15 39005761 to 39006961 1200 CpG island CpG island 7057
Tssr131131 15 39006020 to 39006048 28 + TSS region transcription start site region 131131
Fzd6 15 39006034 to 39038188 32154 + protein coding gene frizzled class receptor 6
Tssr131132 15 39006091 to 39006106 15 + TSS region transcription start site region 131132
Tssr131133 15 39006272 to 39006365 93 + TSS region transcription start site region 131133
Gm41310 15 39031826 to 39045285 13459 - lncRNA gene predicted gene, 41310
Gm49786 15 39040432 to 39041282 850 + lincRNA gene predicted gene, 49786
Gm24789 15 39040579 to 39040709 130 + snoRNA gene predicted gene, 24789
Gm7194 15 39041872 to 39066778 24906 + lncRNA gene predicted gene 7194
Gm49105 15 39061406 to 39061804 398 + pseudogene predicted gene, 49105
Cpgi7058 15 39076773 to 39077439 666 CpG island CpG island 7058
Tssr131134 15 39076885 to 39076938 53 + TSS region transcription start site region 131134
Cthrc1 15 39076932 to 39087121 10189 + protein coding gene collagen triple helix repeat containing 1
Tssr131135 15 39076964 to 39076973 9 + TSS region transcription start site region 131135
Slc25a32 15 39091231 to 39112716 21485 - protein coding gene solute carrier family 25, member 32
Cpgi7059 15 39112142 to 39113277 1135 CpG island CpG island 7059
Tssr134136 15 39112642 to 39112699 57 - TSS region transcription start site region 134136
Tssr131136 15 39112868 to 39112915 47 + TSS region transcription start site region 131136
Dcaf13 15 39112874 to 39146856 33982 + protein coding gene DDB1 and CUL4 associated factor 13
Tssr131137 15 39112923 to 39112935 12 + TSS region transcription start site region 131137
Tssr131138 15 39112942 to 39112949 7 + TSS region transcription start site region 131138
Tssr131139 15 39112951 to 39112960 9 + TSS region transcription start site region 131139
n-R5s39 15 39146380 to 39146487 107 - rRNA gene nuclear encoded rRNA 5S 39
Gm9522 15 39180511 to 39181436 925 + pseudogene predicted gene 9522
Cpgi7060 15 39196743 to 39199418 2675 CpG island CpG island 7060
Tssr131140 15 39197701 to 39197716 15 + TSS region transcription start site region 131140
Tssr131141 15 39198061 to 39198075 14 + TSS region transcription start site region 131141
Tssr131142 15 39198107 to 39198123 16 + TSS region transcription start site region 131142
Tssr131143 15 39198244 to 39198267 23 + TSS region transcription start site region 131143
Rims2 15 39198286 to 39684375 486089 + protein coding gene regulating synaptic membrane exocytosis 2
Tssr131144 15 39210034 to 39210035 1 + TSS region transcription start site region 131144
Gm25381 15 39308470 to 39308578 108 - miRNA gene predicted gene, 25381
Tssr134137 15 39325817 to 39325821 4 - TSS region transcription start site region 134137
Tssr131145 15 39391556 to 39391585 29 + TSS region transcription start site region 131145
Tssr131146 15 39391789 to 39391800 11 + TSS region transcription start site region 131146
Tssr131147 15 39391803 to 39391821 18 + TSS region transcription start site region 131147
Tssr131148 15 39391826 to 39391842 16 + TSS region transcription start site region 131148
Tssr131149 15 39391853 to 39391898 45 + TSS region transcription start site region 131149
Tssr131150 15 39391900 to 39391907 7 + TSS region transcription start site region 131150
Tssr131151 15 39391917 to 39391935 18 + TSS region transcription start site region 131151
Tssr131152 15 39391936 to 39391947 11 + TSS region transcription start site region 131152
Gm46510 15 39403616 to 39407389 3773 - pseudogene predicted gene, 46510
Tssr131153 15 39434297 to 39434306 9 + TSS region transcription start site region 131153
Tssr131154 15 39434323 to 39434334 11 + TSS region transcription start site region 131154
Tssr131155 15 39434351 to 39434357 6 + TSS region transcription start site region 131155
Tssr131156 15 39434567 to 39434580 13 + TSS region transcription start site region 131156
Tssr131157 15 39463094 to 39463098 4 + TSS region transcription start site region 131157
Tssr131158 15 39493651 to 39493655 4 + TSS region transcription start site region 131158
Tssr131159 15 39619680 to 39619688 8 + TSS region transcription start site region 131159
4932442A14Rik 15 39642245 to 39645361 3116 unclassified gene RIKEN cDNA 4932442A14 gene
Cpgi7061 15 39659354 to 39660069 715 CpG island CpG island 7061
Tssr131160 15 39659512 to 39659585 73 + TSS region transcription start site region 131160
Tssr131161 15 39687281 to 39687286 5 + TSS region transcription start site region 131161
Tssr131162 15 39729237 to 39729245 8 + TSS region transcription start site region 131162
Criq3 15 39730369 to 39730369 0 QTL Citrobacter rodentium infection QTL 3
Tssr131163 15 39736615 to 39736616 1 + TSS region transcription start site region 131163
Tssr131164 15 39745926 to 39745937 11 + TSS region transcription start site region 131164
Dcstamp 15 39745930 to 39760938 15008 + protein coding gene dendrocyte expressed seven transmembrane protein
Dpys 15 39768487 to 39857470 88983 - protein coding gene dihydropyrimidinase
Tssr134138 15 39780631 to 39780648 17 - TSS region transcription start site region 134138
Tssr134139 15 39784794 to 39784805 11 - TSS region transcription start site region 134139
Tssr134140 15 39784822 to 39784836 14 - TSS region transcription start site region 134140
Tssr134141 15 39784847 to 39784875 28 - TSS region transcription start site region 134141
Gm16291 15 39797045 to 39812377 15332 + antisense lncRNA gene predicted gene 16291
Cpgi7062 15 39856976 to 39857484 508 CpG island CpG island 7062
Tssr134142 15 39857419 to 39857426 7 - TSS region transcription start site region 134142
Tssr134143 15 39857459 to 39857476 17 - TSS region transcription start site region 134143
Lrp12 15 39870602 to 39943994 73392 - protein coding gene low density lipoprotein-related protein 12