Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:38003432-39263439

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Ubr5 15 37967328 to 38078854 111526 - protein coding gene ubiquitin protein ligase E3 component n-recognin 5
Tssr134114 15 38004690 to 38004694 4 - TSS region transcription start site region 134114
Tssr134115 15 38009660 to 38009685 25 - TSS region transcription start site region 134115
Tssr134116 15 38022239 to 38022244 5 - TSS region transcription start site region 134116
Gm22353 15 38058285 to 38058420 135 + snoRNA gene predicted gene, 22353
Tssr134117 15 38059748 to 38059753 5 - TSS region transcription start site region 134117
Tssr134118 15 38061604 to 38061607 3 - TSS region transcription start site region 134118
Tssr134119 15 38072407 to 38072409 2 - TSS region transcription start site region 134119
Cpgi7047 15 38077812 to 38079238 1426 CpG island CpG island 7047
Tssr134120 15 38078822 to 38078836 14 - TSS region transcription start site region 134120
Tssr134121 15 38078842 to 38078860 18 - TSS region transcription start site region 134121
Tssr131105 15 38079044 to 38079094 50 + TSS region transcription start site region 131105
Tssr131106 15 38079101 to 38079117 16 + TSS region transcription start site region 131106
Gm49312 15 38079102 to 38079563 461 + bidirectional promoter lncRNA gene predicted gene, 49312
Tssr131107 15 38087983 to 38087988 5 + TSS region transcription start site region 131107
D15Mit165 15 38094936 to 38095080 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 165
Gm35081 15 38143704 to 38147564 3860 + lncRNA gene predicted gene, 35081
Gm35167 15 38184009 to 38199681 15672 - lincRNA gene predicted gene, 35167
D15Ertd154e 15 38192687 to 38192930 243 DNA segment DNA segment, Chr 15, ERATO Doi 154, expressed
Tssr131108 15 38199018 to 38199068 50 + TSS region transcription start site region 131108
Odf1 15 38219203 to 38226735 7532 + protein coding gene outer dense fiber of sperm tails 1
Tssr131109 15 38219291 to 38219304 13 + TSS region transcription start site region 131109
Tssr131110 15 38219307 to 38219320 13 + TSS region transcription start site region 131110
Tssr131111 15 38219326 to 38219346 20 + TSS region transcription start site region 131111
Cpgi7048 15 38226152 to 38226503 351 CpG island CpG island 7048
Tssr131112 15 38237899 to 38237901 2 + TSS region transcription start site region 131112
Gm5213 15 38238109 to 38238659 550 + pseudogene predicted gene 5213
Gm24098 15 38238572 to 38238680 108 + miRNA gene predicted gene, 24098
Gm49313 15 38239702 to 38255310 15608 - lincRNA gene predicted gene, 49313
Gm8705 15 38243364 to 38244248 884 - pseudogene predicted gene 8705
Tssr134122 15 38255291 to 38255314 23 - TSS region transcription start site region 134122
Gm49314 15 38275400 to 38276441 1041 - unclassified gene predicted gene, 49314
Klf10 15 38291463 to 38300706 9243 - protein coding gene Kruppel-like factor 10
Tssr134123 15 38294979 to 38294983 4 - TSS region transcription start site region 134123
Cpgi7049 15 38298873 to 38301994 3121 CpG island CpG island 7049
Tssr131113 15 38299357 to 38299366 9 + TSS region transcription start site region 131113
Tssr131114 15 38299508 to 38299514 6 + TSS region transcription start site region 131114
Tssr134124 15 38299690 to 38299693 3 - TSS region transcription start site region 134124
Tssr4579 15 38300285 to 38300289 4 + TSS region transcription start site region 4579
Tssr131115 15 38300392 to 38300393 1 + TSS region transcription start site region 131115
Tssr134125 15 38300660 to 38300671 11 - TSS region transcription start site region 134125
Tssr134126 15 38300693 to 38300715 22 - TSS region transcription start site region 134126
Tssr131116 15 38301192 to 38301220 28 + TSS region transcription start site region 131116
Gm35248 15 38312293 to 38343139 30846 + lincRNA gene predicted gene, 35248
Tssr4580 15 38322202 to 38322209 7 + TSS region transcription start site region 4580
Gm41306 15 38357342 to 38366081 8739 - lncRNA gene predicted gene, 41306
Cpgi7050 15 38373758 to 38374122 364 CpG island CpG island 7050
Cpgi7051 15 38384592 to 38384853 261 CpG island CpG island 7051
Gm26863 15 38384981 to 38386300 1319 + lincRNA gene predicted gene, 26863
Gm41307 15 38385634 to 38404154 18520 - lincRNA gene predicted gene, 41307
G930009F23Rik 15 38441989 to 38455508 13519 - lincRNA gene RIKEN cDNA G930009F23 gene
Tssr134127 15 38455120 to 38455139 19 - TSS region transcription start site region 134127
Tssr134128 15 38455157 to 38455171 14 - TSS region transcription start site region 134128
Tssr134129 15 38455241 to 38455266 25 - TSS region transcription start site region 134129
Tssr131117 15 38455369 to 38455383 14 + TSS region transcription start site region 131117
Cpgi7052 15 38470230 to 38471658 1428 CpG island CpG island 7052
Tssr131118 15 38470723 to 38470757 34 + TSS region transcription start site region 131118
Gm41308 15 38473228 to 38478270 5042 + lncRNA gene predicted gene, 41308
Cpgi7053 15 38473422 to 38473996 574 CpG island CpG island 7053
Tssr134130 15 38473721 to 38473732 11 - TSS region transcription start site region 134130
Azin1 15 38487427 to 38519266 31839 - protein coding gene antizyme inhibitor 1
Mir6951 15 38490473 to 38490547 74 - miRNA gene microRNA 6951
Tssr4581 15 38514825 to 38514830 5 - TSS region transcription start site region 4581
Cpgi7054 15 38518050 to 38519918 1868 CpG island CpG island 7054
Tssr134131 15 38518191 to 38518212 21 - TSS region transcription start site region 134131
Tssr134132 15 38518213 to 38518230 17 - TSS region transcription start site region 134132
Tssr131119 15 38518508 to 38518513 5 + TSS region transcription start site region 131119
Tssr131120 15 38518743 to 38518796 53 + TSS region transcription start site region 131120
Gm49077 15 38518786 to 38520051 1265 + antisense lncRNA gene predicted gene, 49077
Tssr134133 15 38519255 to 38519271 16 - TSS region transcription start site region 134133
Tssr131121 15 38544143 to 38544156 13 + TSS region transcription start site region 131121
D15Mit6.1 15 38544542 to 38544655 113 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 6.1
D15Mit6 15 38544641 to 38544767 126 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 6
2310043O21Rik 15 38549344 to 38594934 45590 - lincRNA gene RIKEN cDNA 2310043O21 gene
Gm41309 15 38568522 to 38602342 33820 - lncRNA gene predicted gene, 41309
Tssr4582 15 38570767 to 38570774 7 - TSS region transcription start site region 4582
Gm29697 15 38573996 to 38577707 3711 + pseudogene predicted gene, 29697
Gm49090 15 38574719 to 38574824 105 - pseudogene predicted gene, 49090
Siah1-ps2 15 38575805 to 38576649 844 - pseudogene siah E3 ubiquitin protein ligase 1, pseudogene 2
D15Mit112 15 38584051 to 38584182 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 112
D15Mit254 15 38604641 to 38604854 213 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 254
Tssr134134 15 38633432 to 38633439 7 - TSS region transcription start site region 134134
Tssr4583 15 38634712 to 38634721 9 + TSS region transcription start site region 4583
1100001I12Rik 15 38640946 to 38647681 6735 - lincRNA gene RIKEN cDNA 1100001I12 gene
Tssr131122 15 38644405 to 38644411 6 + TSS region transcription start site region 131122
Cpgi7055 15 38661639 to 38662489 850 CpG island CpG island 7055
Tssr131123 15 38661905 to 38661912 7 + TSS region transcription start site region 131123
Tssr131124 15 38661914 to 38661981 67 + TSS region transcription start site region 131124
Atp6v1c1 15 38661933 to 38692446 30513 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit C1
Tssr131125 15 38661985 to 38661999 14 + TSS region transcription start site region 131125
Tssr131126 15 38673892 to 38673931 39 + TSS region transcription start site region 131126
Tssr131127 15 38686464 to 38686469 5 + TSS region transcription start site region 131127
Tssr131128 15 38691616 to 38691640 24 + TSS region transcription start site region 131128
Tssr134135 15 38709787 to 38709801 14 - TSS region transcription start site region 134135
Tssr4584 15 38710690 to 38710730 40 + TSS region transcription start site region 4584
Gm45924 15 38713483 to 38728516 15033 - lincRNA gene predicted gene, 45924
D15Mit1007 15 38722884 to 38723083 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1007
Toa2 15 38722884 to 43172395 4449511 QTL testicular oocyte appearance 2
Gm49097 15 38933071 to 38938622 5551 - antisense lncRNA gene predicted gene, 49097
Baalc 15 38933909 to 38952917 19008 + protein coding gene brain and acute leukemia, cytoplasmic
Tssr131129 15 38951116 to 38951123 7 + TSS region transcription start site region 131129
Gm33123 15 38978235 to 38979365 1130 - lncRNA gene predicted gene, 33123
Cpgi7056 15 38989946 to 38990800 854 CpG island CpG island 7056
Gm4740 15 38990234 to 38992007 1773 + pseudogene predicted gene 4740
Tssr131130 15 38999442 to 38999450 8 + TSS region transcription start site region 131130
Gm26704 15 39003757 to 39006108 2351 - bidirectional promoter lncRNA gene predicted gene, 26704
Cpgi7057 15 39005761 to 39006961 1200 CpG island CpG island 7057
Tssr131131 15 39006020 to 39006048 28 + TSS region transcription start site region 131131
Fzd6 15 39006034 to 39038188 32154 + protein coding gene frizzled class receptor 6
Tssr131132 15 39006091 to 39006106 15 + TSS region transcription start site region 131132
Tssr131133 15 39006272 to 39006365 93 + TSS region transcription start site region 131133
Gm41310 15 39031826 to 39045285 13459 - lncRNA gene predicted gene, 41310
Gm49786 15 39040432 to 39041282 850 + lincRNA gene predicted gene, 49786
Gm24789 15 39040579 to 39040709 130 + snoRNA gene predicted gene, 24789
Gm7194 15 39041872 to 39066778 24906 + lncRNA gene predicted gene 7194
Gm49105 15 39061406 to 39061804 398 + pseudogene predicted gene, 49105
Cpgi7058 15 39076773 to 39077439 666 CpG island CpG island 7058
Tssr131134 15 39076885 to 39076938 53 + TSS region transcription start site region 131134
Cthrc1 15 39076932 to 39087121 10189 + protein coding gene collagen triple helix repeat containing 1
Tssr131135 15 39076964 to 39076973 9 + TSS region transcription start site region 131135
Slc25a32 15 39091231 to 39112716 21485 - protein coding gene solute carrier family 25, member 32
Cpgi7059 15 39112142 to 39113277 1135 CpG island CpG island 7059
Tssr134136 15 39112642 to 39112699 57 - TSS region transcription start site region 134136
Tssr131136 15 39112868 to 39112915 47 + TSS region transcription start site region 131136
Dcaf13 15 39112874 to 39146856 33982 + protein coding gene DDB1 and CUL4 associated factor 13
Tssr131137 15 39112923 to 39112935 12 + TSS region transcription start site region 131137
Tssr131138 15 39112942 to 39112949 7 + TSS region transcription start site region 131138
Tssr131139 15 39112951 to 39112960 9 + TSS region transcription start site region 131139
n-R5s39 15 39146380 to 39146487 107 - rRNA gene nuclear encoded rRNA 5S 39
Gm9522 15 39180511 to 39181436 925 + pseudogene predicted gene 9522
Cpgi7060 15 39196743 to 39199418 2675 CpG island CpG island 7060
Tssr131140 15 39197701 to 39197716 15 + TSS region transcription start site region 131140
Tssr131141 15 39198061 to 39198075 14 + TSS region transcription start site region 131141
Tssr131142 15 39198107 to 39198123 16 + TSS region transcription start site region 131142
Tssr131143 15 39198244 to 39198267 23 + TSS region transcription start site region 131143
Rims2 15 39198286 to 39684375 486089 + protein coding gene regulating synaptic membrane exocytosis 2
Tssr131144 15 39210034 to 39210035 1 + TSS region transcription start site region 131144