Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:37497686-38447693

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob9 15 26035594 to 37781057 11745463 QTL dietary obesity 9
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Ncald 15 37366175 to 37792570 426395 - protein coding gene neurocalcin delta
Gm49397 15 37432477 to 37734335 301858 - unclassified non-coding RNA gene predicted gene, 49397
Gm41305 15 37514812 to 37529814 15002 + lncRNA gene predicted gene, 41305
Tssr131103 15 37517483 to 37517488 5 + TSS region transcription start site region 131103
Gm49311 15 37559026 to 37561830 2804 - unclassified gene predicted gene, 49311
Gm24833 15 37603415 to 37603534 119 - snRNA gene predicted gene, 24833
D15Mit256 15 37640517 to 37640637 120 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 256
Gm41304 15 37641698 to 37650931 9233 + lncRNA gene predicted gene, 41304
Tssr134097 15 37680493 to 37680502 9 - TSS region transcription start site region 134097
Gm15942 15 37699613 to 37701407 1794 + antisense lncRNA gene predicted gene 15942
Tssr134098 15 37734402 to 37734432 30 - TSS region transcription start site region 134098
Tssr131104 15 37754438 to 37754445 7 + TSS region transcription start site region 131104
Gm15940 15 37762832 to 37765401 2569 - sense intronic lncRNA gene predicted gene 15940
Tssr134099 15 37764538 to 37764556 18 - TSS region transcription start site region 134099
Tssr134100 15 37780324 to 37780345 21 - TSS region transcription start site region 134100
D15Mit22 15 37780949 to 37781057 108 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 22
Cpgi7045 15 37791251 to 37792574 1323 CpG island CpG island 7045
Tssr134101 15 37791993 to 37792005 12 - TSS region transcription start site region 134101
Tssr134102 15 37792019 to 37792036 17 - TSS region transcription start site region 134102
Tssr134103 15 37792039 to 37792060 21 - TSS region transcription start site region 134103
Tssr134104 15 37792166 to 37792188 22 - TSS region transcription start site region 134104
Tssr134105 15 37792391 to 37792415 24 - TSS region transcription start site region 134105
Rps19-ps5 15 37868086 to 37868488 402 + pseudogene ribosomal protein S19, pseudogene 5
Gm35019 15 37892995 to 37899716 6721 - lincRNA gene predicted gene, 35019
Tssr134106 15 37899693 to 37899707 14 - TSS region transcription start site region 134106
Rrm2b 15 37923952 to 37961110 37158 - protein coding gene ribonucleotide reductase M2 B (TP53 inducible)
Gm3362 15 37943327 to 37943792 465 - pseudogene predicted pseudogene 3362
Tssr134107 15 37960083 to 37960087 4 - TSS region transcription start site region 134107
Gm49085 15 37960471 to 37966218 5747 + antisense lncRNA gene predicted gene, 49085
Cpgi7046 15 37960506 to 37961599 1093 CpG island CpG island 7046
Tssr134108 15 37960916 to 37960935 19 - TSS region transcription start site region 134108
Tssr134109 15 37961059 to 37961107 48 - TSS region transcription start site region 134109
Tssr134110 15 37966362 to 37966366 4 - TSS region transcription start site region 134110
Ubr5 15 37967328 to 38078854 111526 - protein coding gene ubiquitin protein ligase E3 component n-recognin 5
Tssr134111 15 37968446 to 37968464 18 - TSS region transcription start site region 134111
Tssr134112 15 37972686 to 37972693 7 - TSS region transcription start site region 134112
Tssr134113 15 37985009 to 37985013 4 - TSS region transcription start site region 134113
Tssr134114 15 38004690 to 38004694 4 - TSS region transcription start site region 134114
Tssr134115 15 38009660 to 38009685 25 - TSS region transcription start site region 134115
Tssr134116 15 38022239 to 38022244 5 - TSS region transcription start site region 134116
Gm22353 15 38058285 to 38058420 135 + snoRNA gene predicted gene, 22353
Tssr134117 15 38059748 to 38059753 5 - TSS region transcription start site region 134117
Tssr134118 15 38061604 to 38061607 3 - TSS region transcription start site region 134118
Tssr134119 15 38072407 to 38072409 2 - TSS region transcription start site region 134119
Cpgi7047 15 38077812 to 38079238 1426 CpG island CpG island 7047
Tssr134120 15 38078822 to 38078836 14 - TSS region transcription start site region 134120
Tssr134121 15 38078842 to 38078860 18 - TSS region transcription start site region 134121
Tssr131105 15 38079044 to 38079094 50 + TSS region transcription start site region 131105
Tssr131106 15 38079101 to 38079117 16 + TSS region transcription start site region 131106
Gm49312 15 38079102 to 38079563 461 + bidirectional promoter lncRNA gene predicted gene, 49312
Tssr131107 15 38087983 to 38087988 5 + TSS region transcription start site region 131107
D15Mit165 15 38094936 to 38095080 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 165
Gm35081 15 38143704 to 38147564 3860 + lncRNA gene predicted gene, 35081
Gm35167 15 38184009 to 38199681 15672 - lincRNA gene predicted gene, 35167
D15Ertd154e 15 38192687 to 38192930 243 DNA segment DNA segment, Chr 15, ERATO Doi 154, expressed
Tssr131108 15 38199018 to 38199068 50 + TSS region transcription start site region 131108
Odf1 15 38219203 to 38226735 7532 + protein coding gene outer dense fiber of sperm tails 1
Tssr131109 15 38219291 to 38219304 13 + TSS region transcription start site region 131109
Tssr131110 15 38219307 to 38219320 13 + TSS region transcription start site region 131110
Tssr131111 15 38219326 to 38219346 20 + TSS region transcription start site region 131111
Cpgi7048 15 38226152 to 38226503 351 CpG island CpG island 7048
Tssr131112 15 38237899 to 38237901 2 + TSS region transcription start site region 131112
Gm5213 15 38238109 to 38238659 550 + pseudogene predicted gene 5213
Gm24098 15 38238572 to 38238680 108 + miRNA gene predicted gene, 24098
Gm49313 15 38239702 to 38255310 15608 - lincRNA gene predicted gene, 49313
Gm8705 15 38243364 to 38244248 884 - pseudogene predicted gene 8705
Tssr134122 15 38255291 to 38255314 23 - TSS region transcription start site region 134122
Gm49314 15 38275400 to 38276441 1041 - unclassified gene predicted gene, 49314
Klf10 15 38291463 to 38300706 9243 - protein coding gene Kruppel-like factor 10
Tssr134123 15 38294979 to 38294983 4 - TSS region transcription start site region 134123
Cpgi7049 15 38298873 to 38301994 3121 CpG island CpG island 7049
Tssr131113 15 38299357 to 38299366 9 + TSS region transcription start site region 131113
Tssr131114 15 38299508 to 38299514 6 + TSS region transcription start site region 131114
Tssr134124 15 38299690 to 38299693 3 - TSS region transcription start site region 134124
Tssr4579 15 38300285 to 38300289 4 + TSS region transcription start site region 4579
Tssr131115 15 38300392 to 38300393 1 + TSS region transcription start site region 131115
Tssr134125 15 38300660 to 38300671 11 - TSS region transcription start site region 134125
Tssr134126 15 38300693 to 38300715 22 - TSS region transcription start site region 134126
Tssr131116 15 38301192 to 38301220 28 + TSS region transcription start site region 131116
Gm35248 15 38312293 to 38343139 30846 + lincRNA gene predicted gene, 35248
Tssr4580 15 38322202 to 38322209 7 + TSS region transcription start site region 4580
Gm41306 15 38357342 to 38366081 8739 - lncRNA gene predicted gene, 41306
Cpgi7050 15 38373758 to 38374122 364 CpG island CpG island 7050
Cpgi7051 15 38384592 to 38384853 261 CpG island CpG island 7051
Gm26863 15 38384981 to 38386300 1319 + lincRNA gene predicted gene, 26863
Gm41307 15 38385634 to 38404154 18520 - lincRNA gene predicted gene, 41307
G930009F23Rik 15 38441989 to 38455508 13519 - lincRNA gene RIKEN cDNA G930009F23 gene