Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:37304538-38224556

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob9 15 26035594 to 37781057 11745463 QTL dietary obesity 9
Grhl2 15 37233036 to 37363569 130533 + protein coding gene grainyhead like transcription factor 2
Tssr131100 15 37318383 to 37318407 24 + TSS region transcription start site region 131100
Gm16138 15 37331989 to 37332809 820 - pseudogene predicted gene 16138
Tssr131101 15 37337677 to 37337687 10 + TSS region transcription start site region 131101
Tssr131102 15 37346497 to 37346502 5 + TSS region transcription start site region 131102
Ncald 15 37366175 to 37792570 426395 - protein coding gene neurocalcin delta
Gm28221 15 37367205 to 37368498 1293 + antisense lncRNA gene predicted gene 28221
Tssr134089 15 37368315 to 37368326 11 - TSS region transcription start site region 134089
Gm23654 15 37371322 to 37371447 125 - miRNA gene predicted gene, 23654
Tssr134090 15 37381616 to 37381621 5 - TSS region transcription start site region 134090
Gm15941 15 37421133 to 37432664 11531 - antisense lncRNA gene predicted gene 15941
Gm8668 15 37421248 to 37422694 1446 + pseudogene predicted gene 8668
4930447A16Rik 15 37425554 to 37440644 15090 + protein coding gene RIKEN cDNA 4930447A16 gene
Gm49397 15 37432477 to 37734335 301858 - unclassified non-coding RNA gene predicted gene, 49397
Tssr134091 15 37433044 to 37433060 16 - TSS region transcription start site region 134091
Tssr134092 15 37458523 to 37458581 58 - TSS region transcription start site region 134092
Tssr134093 15 37459327 to 37459380 53 - TSS region transcription start site region 134093
Tssr134094 15 37459381 to 37459405 24 - TSS region transcription start site region 134094
Tssr134095 15 37459408 to 37459411 3 - TSS region transcription start site region 134095
Tssr134096 15 37474061 to 37474071 10 - TSS region transcription start site region 134096
Gm3267 15 37492756 to 37493228 472 + pseudogene predicted gene 3267
Gm41305 15 37514812 to 37529814 15002 + lncRNA gene predicted gene, 41305
Tssr131103 15 37517483 to 37517488 5 + TSS region transcription start site region 131103
Gm49311 15 37559026 to 37561830 2804 - unclassified gene predicted gene, 49311
Gm24833 15 37603415 to 37603534 119 - snRNA gene predicted gene, 24833
D15Mit256 15 37640517 to 37640637 120 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 256
Gm41304 15 37641698 to 37650931 9233 + lncRNA gene predicted gene, 41304
Tssr134097 15 37680493 to 37680502 9 - TSS region transcription start site region 134097
Gm15942 15 37699613 to 37701407 1794 + antisense lncRNA gene predicted gene 15942
Tssr134098 15 37734402 to 37734432 30 - TSS region transcription start site region 134098
Tssr131104 15 37754438 to 37754445 7 + TSS region transcription start site region 131104
Gm15940 15 37762832 to 37765401 2569 - sense intronic lncRNA gene predicted gene 15940
Tssr134099 15 37764538 to 37764556 18 - TSS region transcription start site region 134099
Tssr134100 15 37780324 to 37780345 21 - TSS region transcription start site region 134100
D15Mit22 15 37780949 to 37781057 108 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 22
Cpgi7045 15 37791251 to 37792574 1323 CpG island CpG island 7045
Tssr134101 15 37791993 to 37792005 12 - TSS region transcription start site region 134101
Tssr134102 15 37792019 to 37792036 17 - TSS region transcription start site region 134102
Tssr134103 15 37792039 to 37792060 21 - TSS region transcription start site region 134103
Tssr134104 15 37792166 to 37792188 22 - TSS region transcription start site region 134104
Tssr134105 15 37792391 to 37792415 24 - TSS region transcription start site region 134105
Rps19-ps5 15 37868086 to 37868488 402 + pseudogene ribosomal protein S19, pseudogene 5
Gm35019 15 37892995 to 37899716 6721 - lincRNA gene predicted gene, 35019
Tssr134106 15 37899693 to 37899707 14 - TSS region transcription start site region 134106
Rrm2b 15 37923952 to 37961110 37158 - protein coding gene ribonucleotide reductase M2 B (TP53 inducible)
Gm3362 15 37943327 to 37943792 465 - pseudogene predicted pseudogene 3362
Tssr134107 15 37960083 to 37960087 4 - TSS region transcription start site region 134107
Gm49085 15 37960471 to 37966218 5747 + antisense lncRNA gene predicted gene, 49085
Cpgi7046 15 37960506 to 37961599 1093 CpG island CpG island 7046
Tssr134108 15 37960916 to 37960935 19 - TSS region transcription start site region 134108
Tssr134109 15 37961059 to 37961107 48 - TSS region transcription start site region 134109
Tssr134110 15 37966362 to 37966366 4 - TSS region transcription start site region 134110
Ubr5 15 37967328 to 38078854 111526 - protein coding gene ubiquitin protein ligase E3 component n-recognin 5
Tssr134111 15 37968446 to 37968464 18 - TSS region transcription start site region 134111
Tssr134112 15 37972686 to 37972693 7 - TSS region transcription start site region 134112
Tssr134113 15 37985009 to 37985013 4 - TSS region transcription start site region 134113
Tssr134114 15 38004690 to 38004694 4 - TSS region transcription start site region 134114
Tssr134115 15 38009660 to 38009685 25 - TSS region transcription start site region 134115
Tssr134116 15 38022239 to 38022244 5 - TSS region transcription start site region 134116
Gm22353 15 38058285 to 38058420 135 + snoRNA gene predicted gene, 22353
Tssr134117 15 38059748 to 38059753 5 - TSS region transcription start site region 134117
Tssr134118 15 38061604 to 38061607 3 - TSS region transcription start site region 134118
Tssr134119 15 38072407 to 38072409 2 - TSS region transcription start site region 134119
Cpgi7047 15 38077812 to 38079238 1426 CpG island CpG island 7047
Tssr134120 15 38078822 to 38078836 14 - TSS region transcription start site region 134120
Tssr134121 15 38078842 to 38078860 18 - TSS region transcription start site region 134121
Tssr131105 15 38079044 to 38079094 50 + TSS region transcription start site region 131105
Tssr131106 15 38079101 to 38079117 16 + TSS region transcription start site region 131106
Gm49312 15 38079102 to 38079563 461 + bidirectional promoter lncRNA gene predicted gene, 49312
Tssr131107 15 38087983 to 38087988 5 + TSS region transcription start site region 131107
D15Mit165 15 38094936 to 38095080 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 165
Gm35081 15 38143704 to 38147564 3860 + lncRNA gene predicted gene, 35081
Gm35167 15 38184009 to 38199681 15672 - lincRNA gene predicted gene, 35167
D15Ertd154e 15 38192687 to 38192930 243 DNA segment DNA segment, Chr 15, ERATO Doi 154, expressed
Tssr131108 15 38199018 to 38199068 50 + TSS region transcription start site region 131108
Odf1 15 38219203 to 38226735 7532 + protein coding gene outer dense fiber of sperm tails 1
Tssr131109 15 38219291 to 38219304 13 + TSS region transcription start site region 131109
Tssr131110 15 38219307 to 38219320 13 + TSS region transcription start site region 131110
Tssr131111 15 38219326 to 38219346 20 + TSS region transcription start site region 131111