Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:35681374-36735705

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps13b 15 35371160 to 35931229 560069 + protein coding gene vacuolar protein sorting 13B
Gm18994 15 35733604 to 35734622 1018 + pseudogene predicted gene, 18994
9130002K18Rik 15 35787154 to 35790279 3125 + unclassified non-coding RNA gene RIKEN cDNA 9130002K18 gene
D15Mit56 15 35822471 to 35822570 99 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 56
Gm48965 15 35855394 to 35857791 2397 + unclassified gene predicted gene, 48965
Gm48961 15 35860510 to 35863368 2858 + unclassified gene predicted gene, 48961
Gm41292 15 35864334 to 35886870 22536 - lncRNA gene predicted gene, 41292
Tssr133994 15 35913191 to 35913192 1 - TSS region transcription start site region 133994
Cox6c 15 35931976 to 35938246 6270 - protein coding gene cytochrome c oxidase subunit 6C
Tssr133995 15 35932285 to 35932286 1 - TSS region transcription start site region 133995
Tssr133996 15 35937280 to 35937292 12 - TSS region transcription start site region 133996
Cpgi7021 15 35937358 to 35938289 931 CpG island CpG island 7021
Tssr133997 15 35938156 to 35938178 22 - TSS region transcription start site region 133997
Tssr133998 15 35938186 to 35938203 17 - TSS region transcription start site region 133998
Rgs22 15 36009479 to 36140400 130921 - protein coding gene regulator of G-protein signalling 22
Tssr133999 15 36010834 to 36010838 4 - TSS region transcription start site region 133999
Gm25372 15 36028898 to 36029152 254 + unclassified non-coding RNA gene predicted gene, 25372
Tssr134000 15 36054843 to 36054869 26 - TSS region transcription start site region 134000
Tssr134001 15 36055114 to 36055128 14 - TSS region transcription start site region 134001
Tssr4577 15 36077559 to 36077581 22 - TSS region transcription start site region 4577
Gm18889 15 36119998 to 36120926 928 - pseudogene predicted gene, 18889
Tssr131064 15 36139699 to 36139702 3 + TSS region transcription start site region 131064
Cpgi7022 15 36140169 to 36140662 493 CpG island CpG island 7022
Tssr134002 15 36140393 to 36140406 13 - TSS region transcription start site region 134002
Tssr134003 15 36140422 to 36140433 11 - TSS region transcription start site region 134003
Tssr134004 15 36140436 to 36140467 31 - TSS region transcription start site region 134004
Tssr134005 15 36140499 to 36140510 11 - TSS region transcription start site region 134005
Fbxo43 15 36150060 to 36164884 14824 - protein coding gene F-box protein 43
Tssr134006 15 36164370 to 36164372 2 - TSS region transcription start site region 134006
Cpgi7023 15 36164583 to 36165232 649 CpG island CpG island 7023
1700074I03Rik 15 36164619 to 36165446 827 unclassified gene RIKEN cDNA 1700074I03 gene
Tssr134007 15 36164840 to 36164851 11 - TSS region transcription start site region 134007
Tssr134008 15 36164856 to 36164866 10 - TSS region transcription start site region 134008
Tssr134009 15 36164872 to 36164877 5 - TSS region transcription start site region 134009
Gm22979 15 36169796 to 36169954 158 + snRNA gene predicted gene, 22979
Cpgi7024 15 36173745 to 36174215 470 CpG island CpG island 7024
Polr2k 15 36174010 to 36177010 3000 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide K
Tssr131065 15 36174020 to 36174072 52 + TSS region transcription start site region 131065
Tssr131066 15 36176173 to 36176178 5 + TSS region transcription start site region 131066
Spag1 15 36178099 to 36235621 57522 + protein coding gene sperm associated antigen 1
Cpgi7025 15 36179226 to 36179737 511 CpG island CpG island 7025
Tssr131067 15 36179299 to 36179327 28 + TSS region transcription start site region 131067
Tssr131068 15 36179667 to 36179701 34 + TSS region transcription start site region 131068
Gm23754 15 36205260 to 36205322 62 + snRNA gene predicted gene, 23754
Gm41293 15 36206374 to 36210705 4331 - antisense lncRNA gene predicted gene, 41293
Cpgi7026 15 36210279 to 36210993 714 CpG island CpG island 7026
Tssr131069 15 36210468 to 36210489 21 + TSS region transcription start site region 131069
Tssr131070 15 36210497 to 36210523 26 + TSS region transcription start site region 131070
Tssr131071 15 36210527 to 36210544 17 + TSS region transcription start site region 131071
Cpgi7027 15 36214307 to 36214876 569 CpG island CpG island 7027
Tssr131072 15 36226215 to 36226219 4 + TSS region transcription start site region 131072
Rnf19a 15 36239934 to 36283147 43213 - protein coding gene ring finger protein 19A
Mir8097 15 36240046 to 36240164 118 - miRNA gene microRNA 8097
5430434G16Rik 15 36250505 to 36252756 2251 unclassified gene RIKEN cDNA 5430434G16 gene
Tssr134010 15 36271367 to 36271373 6 - TSS region transcription start site region 134010
Tssr134011 15 36276795 to 36276800 5 - TSS region transcription start site region 134011
Cpgi7028 15 36282315 to 36283598 1283 CpG island CpG island 7028
Tssr131073 15 36282499 to 36282511 12 + TSS region transcription start site region 131073
Tssr134012 15 36283105 to 36283150 45 - TSS region transcription start site region 134012
Tssr131074 15 36283246 to 36283306 60 + TSS region transcription start site region 131074
Gm9501 15 36299624 to 36300475 851 + pseudogene predicted gene 9501
Rpl7a-ps3 15 36308149 to 36308944 795 - pseudogene ribosomal protein L7A, pseudogene 3
Gm41294 15 36317396 to 36318991 1595 - lncRNA gene predicted gene, 41294
Gm38600 15 36321973 to 36340926 18953 + lncRNA gene predicted gene, 38600
Gm33826 15 36324546 to 36330146 5600 - lncRNA gene predicted gene, 33826
Gm33936 15 36341217 to 36367117 25900 - lncRNA gene predicted gene, 33936
Tssr134013 15 36346173 to 36346181 8 - TSS region transcription start site region 134013
Tssr134014 15 36367102 to 36367111 9 - TSS region transcription start site region 134014
Tssr134015 15 36367115 to 36367121 6 - TSS region transcription start site region 134015
Tssr134016 15 36374341 to 36374354 13 - TSS region transcription start site region 134016
Gm34150 15 36375049 to 36376090 1041 + lincRNA gene predicted gene, 34150
Gm34093 15 36375343 to 36390172 14829 - lincRNA gene predicted gene, 34093
Gm49224 15 36433319 to 36436691 3372 - lincRNA gene predicted gene, 49224
Tssr131075 15 36439074 to 36439087 13 + TSS region transcription start site region 131075
Tssr131076 15 36439358 to 36439366 8 + TSS region transcription start site region 131076
Gm34316 15 36453249 to 36456583 3334 - lncRNA gene predicted gene, 34316
Tssr134017 15 36455524 to 36455542 18 - TSS region transcription start site region 134017
D15Mit205 15 36475918 to 36476041 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 205
Ankrd46 15 36477668 to 36496791 19123 - protein coding gene ankyrin repeat domain 46
Cpgi7029 15 36496261 to 36496962 701 CpG island CpG island 7029
Tssr134018 15 36496722 to 36496808 86 - TSS region transcription start site region 134018
Gm49246 15 36499977 to 36503431 3454 - unclassified gene predicted gene, 49246
Snx31 15 36504062 to 36555573 51511 - protein coding gene sorting nexin 31
Tssr134019 15 36555313 to 36555348 35 - TSS region transcription start site region 134019
Cpgi7030 15 36555319 to 36555620 301 CpG island CpG island 7030
Tssr134020 15 36555536 to 36555539 3 - TSS region transcription start site region 134020
Tssr134021 15 36555556 to 36555579 23 - TSS region transcription start site region 134021
Tssr134022 15 36555586 to 36555592 6 - TSS region transcription start site region 134022
Cpgi7031 15 36573834 to 36574060 226 CpG island CpG island 7031
Gm44310 15 36583544 to 36583669 125 + miRNA gene predicted gene, 44310
Tssr134023 15 36595295 to 36595299 4 - TSS region transcription start site region 134023
Pabpc1 15 36595658 to 36609581 13923 - protein coding gene poly(A) binding protein, cytoplasmic 1
Tssr134024 15 36598097 to 36598124 27 - TSS region transcription start site region 134024
Tssr134025 15 36600919 to 36600940 21 - TSS region transcription start site region 134025
Tssr134026 15 36605515 to 36605554 39 - TSS region transcription start site region 134026
Cpgi7032 15 36607819 to 36609961 2142 CpG island CpG island 7032
Tssr134027 15 36607846 to 36607855 9 - TSS region transcription start site region 134027
Tssr134028 15 36608355 to 36608360 5 - TSS region transcription start site region 134028
Tssr134029 15 36608367 to 36608377 10 - TSS region transcription start site region 134029
Tssr134030 15 36608484 to 36608513 29 - TSS region transcription start site region 134030
Tssr134031 15 36608551 to 36608619 68 - TSS region transcription start site region 134031
Tssr131077 15 36608606 to 36608642 36 + TSS region transcription start site region 131077
Tssr134032 15 36608621 to 36608622 1 - TSS region transcription start site region 134032
Tssr134033 15 36608624 to 36608635 11 - TSS region transcription start site region 134033
Tssr134034 15 36608650 to 36608661 11 - TSS region transcription start site region 134034
Tssr134035 15 36608692 to 36608720 28 - TSS region transcription start site region 134035
Tssr134036 15 36608745 to 36608772 27 - TSS region transcription start site region 134036
Tssr134037 15 36608794 to 36608802 8 - TSS region transcription start site region 134037
Tssr134038 15 36608826 to 36608840 14 - TSS region transcription start site region 134038
Tssr134039 15 36608959 to 36608983 24 - TSS region transcription start site region 134039
Tssr134040 15 36609134 to 36609139 5 - TSS region transcription start site region 134040
Tssr134041 15 36609511 to 36609528 17 - TSS region transcription start site region 134041
Tssr134042 15 36609540 to 36609566 26 - TSS region transcription start site region 134042
Tssr134043 15 36609568 to 36609620 52 - TSS region transcription start site region 134043
Gm49262 15 36629160 to 36629991 831 + lincRNA gene predicted gene, 49262
Gm6704 15 36629645 to 36629869 224 - pseudogene predicted gene 6704
Cpgi7033 15 36669937 to 36670115 178 CpG island CpG island 7033
Gm46515 15 36681502 to 36695764 14262 - lincRNA gene predicted gene, 46515
D15Mit57 15 36682619 to 36682723 104 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 57
Gm10385 15 36690103 to 36694949 4846 + lincRNA gene predicted gene 10385
Gm41296 15 36704057 to 36709530 5473 - lncRNA gene predicted gene, 41296
Gm41297 15 36717882 to 36728465 10583 - lncRNA gene predicted gene, 41297
Gm49263 15 36723647 to 36725236 1589 + lincRNA gene predicted gene, 49263
Tssr131078 15 36725271 to 36725277 6 + TSS region transcription start site region 131078
A830021M18Rik 15 36726217 to 36730786 4569 + lncRNA gene RIKEN cDNA A830021M18 gene
Tssr131079 15 36726320 to 36726325 5 + TSS region transcription start site region 131079
Tssr131080 15 36726361 to 36726379 18 + TSS region transcription start site region 131080
Tssr131081 15 36726392 to 36726401 9 + TSS region transcription start site region 131081
Tssr131082 15 36726667 to 36726696 29 + TSS region transcription start site region 131082
Tssr131083 15 36726860 to 36726872 12 + TSS region transcription start site region 131083
Tssr131084 15 36726906 to 36726941 35 + TSS region transcription start site region 131084
Cpgi7034 15 36727336 to 36727994 658 CpG island CpG island 7034