Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:35106160-36196229

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stk3 15 34875499 to 35155895 280396 - protein coding gene serine/threonine kinase 3
Tssr133990 15 35150730 to 35150736 6 - TSS region transcription start site region 133990
Cpgi7013 15 35155218 to 35156106 888 CpG island CpG island 7013
Tssr133991 15 35155651 to 35155732 81 - TSS region transcription start site region 133991
Tssr133992 15 35155758 to 35155793 35 - TSS region transcription start site region 133992
Gm33497 15 35200107 to 35270303 70196 + lincRNA gene predicted gene, 33497
Tssr131045 15 35200931 to 35200974 43 + TSS region transcription start site region 131045
Tssr131046 15 35267530 to 35267565 35 + TSS region transcription start site region 131046
D15Dcr6 15 35292428 to 35292523 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 6
Cpgi7014 15 35292903 to 35294264 1361 CpG island CpG island 7014
Tssr133993 15 35295088 to 35295104 16 - TSS region transcription start site region 133993
Cpgi7015 15 35295925 to 35297121 1196 CpG island CpG island 7015
Tssr131047 15 35296090 to 35296112 22 + TSS region transcription start site region 131047
Osr2 15 35296098 to 35303305 7207 + protein coding gene odd-skipped related 2
Tssr131048 15 35296118 to 35296134 16 + TSS region transcription start site region 131048
Cpgi7016 15 35298839 to 35299054 215 CpG island CpG island 7016
Cpgi7017 15 35299606 to 35300690 1084 CpG island CpG island 7017
Cpgi7018 15 35302415 to 35303034 619 CpG island CpG island 7018
Tssr131049 15 35303589 to 35303594 5 + TSS region transcription start site region 131049
BC048602 15 35307010 to 35328535 21525 - lincRNA gene cDNA sequence BC048602
Tssr131050 15 35313273 to 35313314 41 + TSS region transcription start site region 131050
Cpgi7019 15 35326309 to 35326961 652 CpG island CpG island 7019
Gm33584 15 35328990 to 35340366 11376 + lncRNA gene predicted gene, 33584
Tssr131051 15 35329171 to 35329192 21 + TSS region transcription start site region 131051
Gm48960 15 35368453 to 35373147 4694 - antisense lncRNA gene predicted gene, 48960
Cpgi7020 15 35371010 to 35372067 1057 CpG island CpG island 7020
Tssr131052 15 35371073 to 35371094 21 + TSS region transcription start site region 131052
Tssr131053 15 35371109 to 35371138 29 + TSS region transcription start site region 131053
Tssr131054 15 35371155 to 35371168 13 + TSS region transcription start site region 131054
Vps13b 15 35371160 to 35931229 560069 + protein coding gene vacuolar protein sorting 13B
Tssr131055 15 35371253 to 35371260 7 + TSS region transcription start site region 131055
Tssr131056 15 35371293 to 35371369 76 + TSS region transcription start site region 131056
Tssr131057 15 35371498 to 35371593 95 + TSS region transcription start site region 131057
Tssr131058 15 35431381 to 35431395 14 + TSS region transcription start site region 131058
Gm24771 15 35487400 to 35487536 136 + snoRNA gene predicted gene, 24771
Tssr131059 15 35491993 to 35492008 15 + TSS region transcription start site region 131059
Tssr131060 15 35501907 to 35501912 5 + TSS region transcription start site region 131060
Tssr131061 15 35531460 to 35531468 8 + TSS region transcription start site region 131061
Gm48966 15 35568243 to 35569885 1642 + unclassified gene predicted gene, 48966
Gm7968 15 35589314 to 35591638 2324 + unclassified gene predicted gene 7968
Tssr131062 15 35591847 to 35591857 10 + TSS region transcription start site region 131062
Tssr131063 15 35653834 to 35653844 10 + TSS region transcription start site region 131063
Mir599 15 35660831 to 35660918 87 - miRNA gene microRNA 599
Mir875 15 35660970 to 35661047 77 - miRNA gene microRNA 875
Gm18994 15 35733604 to 35734622 1018 + pseudogene predicted gene, 18994
9130002K18Rik 15 35787154 to 35790279 3125 + unclassified non-coding RNA gene RIKEN cDNA 9130002K18 gene
D15Mit56 15 35822471 to 35822570 99 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 56
Gm48965 15 35855394 to 35857791 2397 + unclassified gene predicted gene, 48965
Gm48961 15 35860510 to 35863368 2858 + unclassified gene predicted gene, 48961
Gm41292 15 35864334 to 35886870 22536 - lncRNA gene predicted gene, 41292
Tssr133994 15 35913191 to 35913192 1 - TSS region transcription start site region 133994
Cox6c 15 35931976 to 35938246 6270 - protein coding gene cytochrome c oxidase subunit 6C
Tssr133995 15 35932285 to 35932286 1 - TSS region transcription start site region 133995
Tssr133996 15 35937280 to 35937292 12 - TSS region transcription start site region 133996
Cpgi7021 15 35937358 to 35938289 931 CpG island CpG island 7021
Tssr133997 15 35938156 to 35938178 22 - TSS region transcription start site region 133997
Tssr133998 15 35938186 to 35938203 17 - TSS region transcription start site region 133998
Rgs22 15 36009479 to 36140400 130921 - protein coding gene regulator of G-protein signalling 22
Tssr133999 15 36010834 to 36010838 4 - TSS region transcription start site region 133999
Gm25372 15 36028898 to 36029152 254 + unclassified non-coding RNA gene predicted gene, 25372
Tssr134000 15 36054843 to 36054869 26 - TSS region transcription start site region 134000
Tssr134001 15 36055114 to 36055128 14 - TSS region transcription start site region 134001
Tssr4577 15 36077559 to 36077581 22 - TSS region transcription start site region 4577
Gm18889 15 36119998 to 36120926 928 - pseudogene predicted gene, 18889
Tssr131064 15 36139699 to 36139702 3 + TSS region transcription start site region 131064
Cpgi7022 15 36140169 to 36140662 493 CpG island CpG island 7022
Tssr134002 15 36140393 to 36140406 13 - TSS region transcription start site region 134002
Tssr134003 15 36140422 to 36140433 11 - TSS region transcription start site region 134003
Tssr134004 15 36140436 to 36140467 31 - TSS region transcription start site region 134004
Tssr134005 15 36140499 to 36140510 11 - TSS region transcription start site region 134005
Fbxo43 15 36150060 to 36164884 14824 - protein coding gene F-box protein 43
Tssr134006 15 36164370 to 36164372 2 - TSS region transcription start site region 134006
Cpgi7023 15 36164583 to 36165232 649 CpG island CpG island 7023
1700074I03Rik 15 36164619 to 36165446 827 unclassified gene RIKEN cDNA 1700074I03 gene
Tssr134007 15 36164840 to 36164851 11 - TSS region transcription start site region 134007
Tssr134008 15 36164856 to 36164866 10 - TSS region transcription start site region 134008
Tssr134009 15 36164872 to 36164877 5 - TSS region transcription start site region 134009
Gm22979 15 36169796 to 36169954 158 + snRNA gene predicted gene, 22979
Cpgi7024 15 36173745 to 36174215 470 CpG island CpG island 7024
Polr2k 15 36174010 to 36177010 3000 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide K
Tssr131065 15 36174020 to 36174072 52 + TSS region transcription start site region 131065
Tssr131066 15 36176173 to 36176178 5 + TSS region transcription start site region 131066
Spag1 15 36178099 to 36235621 57522 + protein coding gene sperm associated antigen 1
Cpgi7025 15 36179226 to 36179737 511 CpG island CpG island 7025
Tssr131067 15 36179299 to 36179327 28 + TSS region transcription start site region 131067
Tssr131068 15 36179667 to 36179701 34 + TSS region transcription start site region 131068