Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:34279307-38149876

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406 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob9 15 26035594 to 37781057 11745463 QTL dietary obesity 9
Laptm4b 15 34238026 to 34284295 46269 + protein coding gene lysosomal-associated protein transmembrane 4B
Gm25809 15 34288819 to 34288870 51 - snoRNA gene predicted gene, 25809
D15Mit1004 15 34290327 to 34290459 132 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 1004
Cpgi7007 15 34306395 to 34307203 808 CpG island CpG island 7007
Matn2 15 34306654 to 34436242 129588 + protein coding gene matrilin 2
Tssr131034 15 34306666 to 34306757 91 + TSS region transcription start site region 131034
Tssr131035 15 34306767 to 34306784 17 + TSS region transcription start site region 131035
9430069I07Rik 15 34349051 to 34357872 8821 - protein coding gene RIKEN cDNA 9430069I07 gene
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Tssr131036 15 34434177 to 34434204 27 + TSS region transcription start site region 131036
Rpl30 15 34440505 to 34443276 2771 - protein coding gene ribosomal protein L30
Gm24523 15 34440791 to 34440922 131 - snoRNA gene predicted gene, 24523
Cpgi7008 15 34442899 to 34443863 964 CpG island CpG island 7008
Tssr133965 15 34442935 to 34442970 35 - TSS region transcription start site region 133965
D730044K07Rik 15 34442980 to 34444812 1832 + unclassified gene RIKEN cDNA D730044K07 gene
Tssr133966 15 34443161 to 34443166 5 - TSS region transcription start site region 133966
Tssr133967 15 34443176 to 34443204 28 - TSS region transcription start site region 133967
Tssr133968 15 34443209 to 34443227 18 - TSS region transcription start site region 133968
Tssr133969 15 34443229 to 34443272 43 - TSS region transcription start site region 133969
Tssr131037 15 34443296 to 34443370 74 + TSS region transcription start site region 131037
Tssr133970 15 34443508 to 34443574 66 - TSS region transcription start site region 133970
Tssr133971 15 34443646 to 34443666 20 - TSS region transcription start site region 133971
Tssr133972 15 34443725 to 34443733 8 - TSS region transcription start site region 133972
Tssr131038 15 34453285 to 34453303 18 + TSS region transcription start site region 131038
Erich5 15 34453312 to 34473892 20580 + protein coding gene glutamate rich 5
Cpgi7009 15 34453327 to 34453897 570 CpG island CpG island 7009
Gm49188 15 34481707 to 34483829 2122 + unclassified gene predicted gene, 49188
Rida 15 34484022 to 34495246 11224 - protein coding gene reactive intermediate imine deaminase A homolog
Tssr133973 15 34495150 to 34495159 9 - TSS region transcription start site region 133973
Cpgi7010 15 34495163 to 34495796 633 CpG island CpG island 7010
Tssr133974 15 34495167 to 34495171 4 - TSS region transcription start site region 133974
Tssr133975 15 34495180 to 34495276 96 - TSS region transcription start site region 133975
Tssr131039 15 34495302 to 34495347 45 + TSS region transcription start site region 131039
Pop1 15 34495311 to 34530653 35342 + protein coding gene processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
Tssr131040 15 34495364 to 34495385 21 + TSS region transcription start site region 131040
Tssr131041 15 34496244 to 34496250 6 + TSS region transcription start site region 131041
Gm49195 15 34531560 to 34531698 138 + pseudogene predicted gene, 49195
Gm22208 15 34531714 to 34531823 109 + snRNA gene predicted gene, 22208
Nipal2 15 34572799 to 34679212 106413 - protein coding gene NIPA-like domain containing 2
Tssr4576 15 34609892 to 34609897 5 + TSS region transcription start site region 4576
9030408N04Rik 15 34665271 to 34666051 780 unclassified gene RIKEN cDNA 9030408N04 gene
Tssr131042 15 34674997 to 34675007 10 + TSS region transcription start site region 131042
4930413F20Rik 15 34675073 to 34679204 4131 + antisense lncRNA gene RIKEN cDNA 4930413F20 gene
Cpgi7011 15 34678286 to 34678970 684 CpG island CpG island 7011
Tssr133976 15 34678694 to 34678746 52 - TSS region transcription start site region 133976
Tssr133977 15 34678755 to 34678802 47 - TSS region transcription start site region 133977
Tssr133978 15 34678805 to 34678827 22 - TSS region transcription start site region 133978
Tssr133979 15 34678828 to 34678851 23 - TSS region transcription start site region 133979
Tssr133980 15 34678876 to 34678892 16 - TSS region transcription start site region 133980
Tssr133981 15 34679175 to 34679208 33 - TSS region transcription start site region 133981
Gm32970 15 34744970 to 34838442 93472 - protein coding gene predicted gene, 32970
Gm48932 15 34823180 to 34826429 3249 - unclassified gene predicted gene, 48932
Cpgi7012 15 34837076 to 34838830 1754 CpG island CpG island 7012
Kcns2 15 34837355 to 34843407 6052 + protein coding gene K+ voltage-gated channel, subfamily S, 2
Stk3 15 34875499 to 35155895 280396 - protein coding gene serine/threonine kinase 3
Tssr133982 15 34876210 to 34876228 18 - TSS region transcription start site region 133982
Tssr133983 15 34876330 to 34876341 11 - TSS region transcription start site region 133983
Tssr133984 15 34878822 to 34878832 10 - TSS region transcription start site region 133984
Tssr133985 15 34983344 to 34983356 12 - TSS region transcription start site region 133985
Tssr133986 15 34995289 to 34995292 3 - TSS region transcription start site region 133986
Tssr133987 15 34996083 to 34996119 36 - TSS region transcription start site region 133987
Tssr131043 15 35024027 to 35024069 42 + TSS region transcription start site region 131043
Tssr131044 15 35041205 to 35041207 2 + TSS region transcription start site region 131044
Tssr133988 15 35062367 to 35062390 23 - TSS region transcription start site region 133988
Tssr133989 15 35062396 to 35062407 11 - TSS region transcription start site region 133989
Tssr133990 15 35150730 to 35150736 6 - TSS region transcription start site region 133990
Cpgi7013 15 35155218 to 35156106 888 CpG island CpG island 7013
Tssr133991 15 35155651 to 35155732 81 - TSS region transcription start site region 133991
Tssr133992 15 35155758 to 35155793 35 - TSS region transcription start site region 133992
Gm33497 15 35200107 to 35270303 70196 + lincRNA gene predicted gene, 33497
Tssr131045 15 35200931 to 35200974 43 + TSS region transcription start site region 131045
Tssr131046 15 35267530 to 35267565 35 + TSS region transcription start site region 131046
D15Dcr6 15 35292428 to 35292523 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 6
Cpgi7014 15 35292903 to 35294264 1361 CpG island CpG island 7014
Tssr133993 15 35295088 to 35295104 16 - TSS region transcription start site region 133993
Cpgi7015 15 35295925 to 35297121 1196 CpG island CpG island 7015
Tssr131047 15 35296090 to 35296112 22 + TSS region transcription start site region 131047
Osr2 15 35296098 to 35303305 7207 + protein coding gene odd-skipped related 2
Tssr131048 15 35296118 to 35296134 16 + TSS region transcription start site region 131048
Cpgi7016 15 35298839 to 35299054 215 CpG island CpG island 7016
Cpgi7017 15 35299606 to 35300690 1084 CpG island CpG island 7017
Cpgi7018 15 35302415 to 35303034 619 CpG island CpG island 7018
Tssr131049 15 35303589 to 35303594 5 + TSS region transcription start site region 131049
BC048602 15 35307010 to 35328535 21525 - lincRNA gene cDNA sequence BC048602
Tssr131050 15 35313273 to 35313314 41 + TSS region transcription start site region 131050
Cpgi7019 15 35326309 to 35326961 652 CpG island CpG island 7019
Gm33584 15 35328990 to 35340366 11376 + lncRNA gene predicted gene, 33584
Tssr131051 15 35329171 to 35329192 21 + TSS region transcription start site region 131051
Gm48960 15 35368453 to 35373147 4694 - antisense lncRNA gene predicted gene, 48960
Cpgi7020 15 35371010 to 35372067 1057 CpG island CpG island 7020
Tssr131052 15 35371073 to 35371094 21 + TSS region transcription start site region 131052
Tssr131053 15 35371109 to 35371138 29 + TSS region transcription start site region 131053
Tssr131054 15 35371155 to 35371168 13 + TSS region transcription start site region 131054
Vps13b 15 35371160 to 35931229 560069 + protein coding gene vacuolar protein sorting 13B
Tssr131055 15 35371253 to 35371260 7 + TSS region transcription start site region 131055
Tssr131056 15 35371293 to 35371369 76 + TSS region transcription start site region 131056
Tssr131057 15 35371498 to 35371593 95 + TSS region transcription start site region 131057
Tssr131058 15 35431381 to 35431395 14 + TSS region transcription start site region 131058
Gm24771 15 35487400 to 35487536 136 + snoRNA gene predicted gene, 24771
Tssr131059 15 35491993 to 35492008 15 + TSS region transcription start site region 131059
Tssr131060 15 35501907 to 35501912 5 + TSS region transcription start site region 131060
Tssr131061 15 35531460 to 35531468 8 + TSS region transcription start site region 131061
Gm48966 15 35568243 to 35569885 1642 + unclassified gene predicted gene, 48966
Gm7968 15 35589314 to 35591638 2324 + unclassified gene predicted gene 7968
Tssr131062 15 35591847 to 35591857 10 + TSS region transcription start site region 131062
Tssr131063 15 35653834 to 35653844 10 + TSS region transcription start site region 131063
Mir599 15 35660831 to 35660918 87 - miRNA gene microRNA 599
Mir875 15 35660970 to 35661047 77 - miRNA gene microRNA 875
Gm18994 15 35733604 to 35734622 1018 + pseudogene predicted gene, 18994
9130002K18Rik 15 35787154 to 35790279 3125 + unclassified non-coding RNA gene RIKEN cDNA 9130002K18 gene
D15Mit56 15 35822471 to 35822570 99 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 56
Gm48965 15 35855394 to 35857791 2397 + unclassified gene predicted gene, 48965
Gm48961 15 35860510 to 35863368 2858 + unclassified gene predicted gene, 48961
Gm41292 15 35864334 to 35886870 22536 - lncRNA gene predicted gene, 41292
Tssr133994 15 35913191 to 35913192 1 - TSS region transcription start site region 133994
Cox6c 15 35931976 to 35938246 6270 - protein coding gene cytochrome c oxidase subunit 6C
Tssr133995 15 35932285 to 35932286 1 - TSS region transcription start site region 133995
Tssr133996 15 35937280 to 35937292 12 - TSS region transcription start site region 133996
Cpgi7021 15 35937358 to 35938289 931 CpG island CpG island 7021
Tssr133997 15 35938156 to 35938178 22 - TSS region transcription start site region 133997
Tssr133998 15 35938186 to 35938203 17 - TSS region transcription start site region 133998
Rgs22 15 36009479 to 36140400 130921 - protein coding gene regulator of G-protein signalling 22
Tssr133999 15 36010834 to 36010838 4 - TSS region transcription start site region 133999
Gm25372 15 36028898 to 36029152 254 + unclassified non-coding RNA gene predicted gene, 25372
Tssr134000 15 36054843 to 36054869 26 - TSS region transcription start site region 134000
Tssr134001 15 36055114 to 36055128 14 - TSS region transcription start site region 134001
Tssr4577 15 36077559 to 36077581 22 - TSS region transcription start site region 4577
Gm18889 15 36119998 to 36120926 928 - pseudogene predicted gene, 18889
Tssr131064 15 36139699 to 36139702 3 + TSS region transcription start site region 131064
Cpgi7022 15 36140169 to 36140662 493 CpG island CpG island 7022
Tssr134002 15 36140393 to 36140406 13 - TSS region transcription start site region 134002
Tssr134003 15 36140422 to 36140433 11 - TSS region transcription start site region 134003
Tssr134004 15 36140436 to 36140467 31 - TSS region transcription start site region 134004
Tssr134005 15 36140499 to 36140510 11 - TSS region transcription start site region 134005
Fbxo43 15 36150060 to 36164884 14824 - protein coding gene F-box protein 43
Tssr134006 15 36164370 to 36164372 2 - TSS region transcription start site region 134006
Cpgi7023 15 36164583 to 36165232 649 CpG island CpG island 7023
1700074I03Rik 15 36164619 to 36165446 827 unclassified gene RIKEN cDNA 1700074I03 gene
Tssr134007 15 36164840 to 36164851 11 - TSS region transcription start site region 134007
Tssr134008 15 36164856 to 36164866 10 - TSS region transcription start site region 134008
Tssr134009 15 36164872 to 36164877 5 - TSS region transcription start site region 134009
Gm22979 15 36169796 to 36169954 158 + snRNA gene predicted gene, 22979
Cpgi7024 15 36173745 to 36174215 470 CpG island CpG island 7024
Polr2k 15 36174010 to 36177010 3000 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide K
Tssr131065 15 36174020 to 36174072 52 + TSS region transcription start site region 131065
Tssr131066 15 36176173 to 36176178 5 + TSS region transcription start site region 131066
Spag1 15 36178099 to 36235621 57522 + protein coding gene sperm associated antigen 1
Cpgi7025 15 36179226 to 36179737 511 CpG island CpG island 7025
Tssr131067 15 36179299 to 36179327 28 + TSS region transcription start site region 131067
Tssr131068 15 36179667 to 36179701 34 + TSS region transcription start site region 131068
Gm23754 15 36205260 to 36205322 62 + snRNA gene predicted gene, 23754
Gm41293 15 36206374 to 36210705 4331 - antisense lncRNA gene predicted gene, 41293
Cpgi7026 15 36210279 to 36210993 714 CpG island CpG island 7026
Tssr131069 15 36210468 to 36210489 21 + TSS region transcription start site region 131069
Tssr131070 15 36210497 to 36210523 26 + TSS region transcription start site region 131070
Tssr131071 15 36210527 to 36210544 17 + TSS region transcription start site region 131071
Cpgi7027 15 36214307 to 36214876 569 CpG island CpG island 7027
Tssr131072 15 36226215 to 36226219 4 + TSS region transcription start site region 131072
Rnf19a 15 36239934 to 36283147 43213 - protein coding gene ring finger protein 19A
Mir8097 15 36240046 to 36240164 118 - miRNA gene microRNA 8097
5430434G16Rik 15 36250505 to 36252756 2251 unclassified gene RIKEN cDNA 5430434G16 gene
Tssr134010 15 36271367 to 36271373 6 - TSS region transcription start site region 134010
Tssr134011 15 36276795 to 36276800 5 - TSS region transcription start site region 134011
Cpgi7028 15 36282315 to 36283598 1283 CpG island CpG island 7028
Tssr131073 15 36282499 to 36282511 12 + TSS region transcription start site region 131073
Tssr134012 15 36283105 to 36283150 45 - TSS region transcription start site region 134012
Tssr131074 15 36283246 to 36283306 60 + TSS region transcription start site region 131074
Gm9501 15 36299624 to 36300475 851 + pseudogene predicted gene 9501
Rpl7a-ps3 15 36308149 to 36308944 795 - pseudogene ribosomal protein L7A, pseudogene 3
Gm41294 15 36317396 to 36318991 1595 - lncRNA gene predicted gene, 41294
Gm38600 15 36321973 to 36340926 18953 + lncRNA gene predicted gene, 38600
Gm33826 15 36324546 to 36330146 5600 - lncRNA gene predicted gene, 33826
Gm33936 15 36341217 to 36367117 25900 - lncRNA gene predicted gene, 33936
Tssr134013 15 36346173 to 36346181 8 - TSS region transcription start site region 134013
Tssr134014 15 36367102 to 36367111 9 - TSS region transcription start site region 134014
Tssr134015 15 36367115 to 36367121 6 - TSS region transcription start site region 134015
Tssr134016 15 36374341 to 36374354 13 - TSS region transcription start site region 134016
Gm34150 15 36375049 to 36376090 1041 + lincRNA gene predicted gene, 34150
Gm34093 15 36375343 to 36390172 14829 - lincRNA gene predicted gene, 34093
Gm49224 15 36433319 to 36436691 3372 - lincRNA gene predicted gene, 49224
Tssr131075 15 36439074 to 36439087 13 + TSS region transcription start site region 131075
Tssr131076 15 36439358 to 36439366 8 + TSS region transcription start site region 131076
Gm34316 15 36453249 to 36456583 3334 - lncRNA gene predicted gene, 34316
Tssr134017 15 36455524 to 36455542 18 - TSS region transcription start site region 134017
D15Mit205 15 36475918 to 36476041 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 205
Ankrd46 15 36477668 to 36496791 19123 - protein coding gene ankyrin repeat domain 46
Cpgi7029 15 36496261 to 36496962 701 CpG island CpG island 7029
Tssr134018 15 36496722 to 36496808 86 - TSS region transcription start site region 134018
Gm49246 15 36499977 to 36503431 3454 - unclassified gene predicted gene, 49246
Snx31 15 36504062 to 36555573 51511 - protein coding gene sorting nexin 31
Tssr134019 15 36555313 to 36555348 35 - TSS region transcription start site region 134019
Cpgi7030 15 36555319 to 36555620 301 CpG island CpG island 7030
Tssr134020 15 36555536 to 36555539 3 - TSS region transcription start site region 134020
Tssr134021 15 36555556 to 36555579 23 - TSS region transcription start site region 134021
Tssr134022 15 36555586 to 36555592 6 - TSS region transcription start site region 134022
Cpgi7031 15 36573834 to 36574060 226 CpG island CpG island 7031
Gm44310 15 36583544 to 36583669 125 + miRNA gene predicted gene, 44310
Tssr134023 15 36595295 to 36595299 4 - TSS region transcription start site region 134023
Pabpc1 15 36595658 to 36609581 13923 - protein coding gene poly(A) binding protein, cytoplasmic 1