Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:34150073-35204204

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38594 15 34152562 to 34166892 14330 - lncRNA gene predicted gene, 38594
Cpgi7006 15 34237784 to 34238904 1120 CpG island CpG island 7006
Laptm4b 15 34238026 to 34284295 46269 + protein coding gene lysosomal-associated protein transmembrane 4B
Tssr131030 15 34238061 to 34238062 1 + TSS region transcription start site region 131030
Tssr131031 15 34238108 to 34238177 69 + TSS region transcription start site region 131031
Tssr131032 15 34238178 to 34238189 11 + TSS region transcription start site region 131032
Tssr131033 15 34238735 to 34238746 11 + TSS region transcription start site region 131033
Tssr4575 15 34248731 to 34248737 6 - TSS region transcription start site region 4575
Gm18949 15 34268527 to 34269829 1302 - pseudogene predicted gene, 18949
Tssr133964 15 34269862 to 34269863 1 - TSS region transcription start site region 133964
Gm25809 15 34288819 to 34288870 51 - snoRNA gene predicted gene, 25809
D15Mit1004 15 34290327 to 34290459 132 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 1004
Cpgi7007 15 34306395 to 34307203 808 CpG island CpG island 7007
Matn2 15 34306654 to 34436242 129588 + protein coding gene matrilin 2
Tssr131034 15 34306666 to 34306757 91 + TSS region transcription start site region 131034
Tssr131035 15 34306767 to 34306784 17 + TSS region transcription start site region 131035
9430069I07Rik 15 34349051 to 34357872 8821 - protein coding gene RIKEN cDNA 9430069I07 gene
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Tssr131036 15 34434177 to 34434204 27 + TSS region transcription start site region 131036
Rpl30 15 34440505 to 34443276 2771 - protein coding gene ribosomal protein L30
Gm24523 15 34440791 to 34440922 131 - snoRNA gene predicted gene, 24523
Cpgi7008 15 34442899 to 34443863 964 CpG island CpG island 7008
Tssr133965 15 34442935 to 34442970 35 - TSS region transcription start site region 133965
D730044K07Rik 15 34442980 to 34444812 1832 + unclassified gene RIKEN cDNA D730044K07 gene
Tssr133966 15 34443161 to 34443166 5 - TSS region transcription start site region 133966
Tssr133967 15 34443176 to 34443204 28 - TSS region transcription start site region 133967
Tssr133968 15 34443209 to 34443227 18 - TSS region transcription start site region 133968
Tssr133969 15 34443229 to 34443272 43 - TSS region transcription start site region 133969
Tssr131037 15 34443296 to 34443370 74 + TSS region transcription start site region 131037
Tssr133970 15 34443508 to 34443574 66 - TSS region transcription start site region 133970
Tssr133971 15 34443646 to 34443666 20 - TSS region transcription start site region 133971
Tssr133972 15 34443725 to 34443733 8 - TSS region transcription start site region 133972
Tssr131038 15 34453285 to 34453303 18 + TSS region transcription start site region 131038
Erich5 15 34453312 to 34473892 20580 + protein coding gene glutamate rich 5
Cpgi7009 15 34453327 to 34453897 570 CpG island CpG island 7009
Gm49188 15 34481707 to 34483829 2122 + unclassified gene predicted gene, 49188
Rida 15 34484022 to 34495246 11224 - protein coding gene reactive intermediate imine deaminase A homolog
Tssr133973 15 34495150 to 34495159 9 - TSS region transcription start site region 133973
Cpgi7010 15 34495163 to 34495796 633 CpG island CpG island 7010
Tssr133974 15 34495167 to 34495171 4 - TSS region transcription start site region 133974
Tssr133975 15 34495180 to 34495276 96 - TSS region transcription start site region 133975
Tssr131039 15 34495302 to 34495347 45 + TSS region transcription start site region 131039
Pop1 15 34495311 to 34530653 35342 + protein coding gene processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
Tssr131040 15 34495364 to 34495385 21 + TSS region transcription start site region 131040
Tssr131041 15 34496244 to 34496250 6 + TSS region transcription start site region 131041
Gm49195 15 34531560 to 34531698 138 + pseudogene predicted gene, 49195
Gm22208 15 34531714 to 34531823 109 + snRNA gene predicted gene, 22208
Nipal2 15 34572799 to 34679212 106413 - protein coding gene NIPA-like domain containing 2
Tssr4576 15 34609892 to 34609897 5 + TSS region transcription start site region 4576
9030408N04Rik 15 34665271 to 34666051 780 unclassified gene RIKEN cDNA 9030408N04 gene
Tssr131042 15 34674997 to 34675007 10 + TSS region transcription start site region 131042
4930413F20Rik 15 34675073 to 34679204 4131 + antisense lncRNA gene RIKEN cDNA 4930413F20 gene
Cpgi7011 15 34678286 to 34678970 684 CpG island CpG island 7011
Tssr133976 15 34678694 to 34678746 52 - TSS region transcription start site region 133976
Tssr133977 15 34678755 to 34678802 47 - TSS region transcription start site region 133977
Tssr133978 15 34678805 to 34678827 22 - TSS region transcription start site region 133978
Tssr133979 15 34678828 to 34678851 23 - TSS region transcription start site region 133979
Tssr133980 15 34678876 to 34678892 16 - TSS region transcription start site region 133980
Tssr133981 15 34679175 to 34679208 33 - TSS region transcription start site region 133981
Gm32970 15 34744970 to 34838442 93472 - protein coding gene predicted gene, 32970
Gm48932 15 34823180 to 34826429 3249 - unclassified gene predicted gene, 48932
Cpgi7012 15 34837076 to 34838830 1754 CpG island CpG island 7012
Kcns2 15 34837355 to 34843407 6052 + protein coding gene K+ voltage-gated channel, subfamily S, 2
Stk3 15 34875499 to 35155895 280396 - protein coding gene serine/threonine kinase 3
Tssr133982 15 34876210 to 34876228 18 - TSS region transcription start site region 133982
Tssr133983 15 34876330 to 34876341 11 - TSS region transcription start site region 133983
Tssr133984 15 34878822 to 34878832 10 - TSS region transcription start site region 133984
Tssr133985 15 34983344 to 34983356 12 - TSS region transcription start site region 133985
Tssr133986 15 34995289 to 34995292 3 - TSS region transcription start site region 133986
Tssr133987 15 34996083 to 34996119 36 - TSS region transcription start site region 133987
Tssr131043 15 35024027 to 35024069 42 + TSS region transcription start site region 131043
Tssr131044 15 35041205 to 35041207 2 + TSS region transcription start site region 131044
Tssr133988 15 35062367 to 35062390 23 - TSS region transcription start site region 133988
Tssr133989 15 35062396 to 35062407 11 - TSS region transcription start site region 133989
Tssr133990 15 35150730 to 35150736 6 - TSS region transcription start site region 133990
Cpgi7013 15 35155218 to 35156106 888 CpG island CpG island 7013
Tssr133991 15 35155651 to 35155732 81 - TSS region transcription start site region 133991
Tssr133992 15 35155758 to 35155793 35 - TSS region transcription start site region 133992
Gm33497 15 35200107 to 35270303 70196 + lincRNA gene predicted gene, 33497
Tssr131045 15 35200931 to 35200974 43 + TSS region transcription start site region 131045