Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:33468725-35418733

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpq 15 33083129 to 33594552 511423 + protein coding gene carboxypeptidase Q
Cocia16 15 33497411 to 45277417 11780006 QTL cocaine induced activation 16
Tssr133954 15 33550727 to 33550746 19 - TSS region transcription start site region 133954
9430031J08Rik 15 33557051 to 33558236 1185 unclassified gene RIKEN cDNA 9430031J08 gene
Gm24476 15 33589606 to 33589736 130 - rRNA gene predicted gene, 24476
4930592A05Rik 15 33593881 to 33653436 59555 - antisense lncRNA gene RIKEN cDNA 4930592A05 gene
5730407I07Rik 15 33597589 to 33599581 1992 protein coding gene RIKEN cDNA 5730407I07 gene
Tspyl5 15 33683875 to 33687883 4008 - protein coding gene testis-specific protein, Y-encoded-like 5
Cpgi7004 15 33687036 to 33688084 1048 CpG island CpG island 7004
Tssr133955 15 33687804 to 33687835 31 - TSS region transcription start site region 133955
Tssr133956 15 33687840 to 33687864 24 - TSS region transcription start site region 133956
Gm49088 15 33757470 to 33757789 319 - pseudogene predicted gene, 49088
Gm49089 15 33831448 to 33834353 2905 + unclassified gene predicted gene, 49089
Tssr131002 15 33861184 to 33861188 4 + TSS region transcription start site region 131002
4933414I06Rik 15 33929572 to 33930418 846 unclassified non-coding RNA gene RIKEN cDNA 4933414I06 gene
Gm9643 15 34012652 to 34013022 370 + pseudogene predicted gene 9643
Gm41290 15 34022160 to 34037828 15668 - lincRNA gene predicted gene, 41290
Tssr131003 15 34050419 to 34050443 24 + TSS region transcription start site region 131003
Gm49091 15 34053118 to 34053267 149 + pseudogene predicted gene, 49091
Tssr131004 15 34053752 to 34053761 9 + TSS region transcription start site region 131004
Tssr133957 15 34068205 to 34068225 20 - TSS region transcription start site region 133957
Tssr133958 15 34068240 to 34068251 11 - TSS region transcription start site region 133958
Tssr133959 15 34081359 to 34081361 2 - TSS region transcription start site region 133959
Gm41291 15 34081742 to 34083032 1290 - protein coding gene predicted gene, 41291
Cpgi7005 15 34082186 to 34083783 1597 CpG island CpG island 7005
Tssr131005 15 34082221 to 34082232 11 + TSS region transcription start site region 131005
Tssr133960 15 34082575 to 34082593 18 - TSS region transcription start site region 133960
Tssr133961 15 34082609 to 34082637 28 - TSS region transcription start site region 133961
Tssr131006 15 34082664 to 34082734 70 + TSS region transcription start site region 131006
Mtdh 15 34082719 to 34143537 60818 + protein coding gene metadherin
Tssr131007 15 34082740 to 34082756 16 + TSS region transcription start site region 131007
Tssr131008 15 34082764 to 34082775 11 + TSS region transcription start site region 131008
Tssr131009 15 34082789 to 34082836 47 + TSS region transcription start site region 131009
Tssr131010 15 34083002 to 34083010 8 + TSS region transcription start site region 131010
Tssr131011 15 34083011 to 34083020 9 + TSS region transcription start site region 131011
Tssr131012 15 34083029 to 34083038 9 + TSS region transcription start site region 131012
Tssr133962 15 34083240 to 34083263 23 - TSS region transcription start site region 133962
Tssr131013 15 34083303 to 34083319 16 + TSS region transcription start site region 131013
Tssr131014 15 34083327 to 34083336 9 + TSS region transcription start site region 131014
Tssr131015 15 34083346 to 34083353 7 + TSS region transcription start site region 131015
Tssr131016 15 34083369 to 34083372 3 + TSS region transcription start site region 131016
Tssr131017 15 34099508 to 34099531 23 + TSS region transcription start site region 131017
Tssr133963 15 34099516 to 34099533 17 - TSS region transcription start site region 133963
Tssr131018 15 34123678 to 34123689 11 + TSS region transcription start site region 131018
Tssr131019 15 34123712 to 34123728 16 + TSS region transcription start site region 131019
9930017N22Rik 15 34126944 to 34130688 3744 + unclassified gene RIKEN cDNA 9930017N22 gene
Tssr131020 15 34131153 to 34131187 34 + TSS region transcription start site region 131020
Tssr131021 15 34131213 to 34131250 37 + TSS region transcription start site region 131021
Tssr131022 15 34133505 to 34133554 49 + TSS region transcription start site region 131022
Tssr131023 15 34134315 to 34134324 9 + TSS region transcription start site region 131023
Tssr131024 15 34134359 to 34134401 42 + TSS region transcription start site region 131024
D15Mit55 15 34135807 to 34135910 103 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 55
Gm24500 15 34139253 to 34139376 123 - snoRNA gene predicted gene, 24500
Tssr131025 15 34141125 to 34141167 42 + TSS region transcription start site region 131025
Tssr131026 15 34142522 to 34142530 8 + TSS region transcription start site region 131026
Tssr131027 15 34142960 to 34142965 5 + TSS region transcription start site region 131027
Tssr131028 15 34143061 to 34143104 43 + TSS region transcription start site region 131028
Tssr131029 15 34143921 to 34143928 7 + TSS region transcription start site region 131029
Gm38594 15 34152562 to 34166892 14330 - lncRNA gene predicted gene, 38594
Cpgi7006 15 34237784 to 34238904 1120 CpG island CpG island 7006
Laptm4b 15 34238026 to 34284295 46269 + protein coding gene lysosomal-associated protein transmembrane 4B
Tssr131030 15 34238061 to 34238062 1 + TSS region transcription start site region 131030
Tssr131031 15 34238108 to 34238177 69 + TSS region transcription start site region 131031
Tssr131032 15 34238178 to 34238189 11 + TSS region transcription start site region 131032
Tssr131033 15 34238735 to 34238746 11 + TSS region transcription start site region 131033
Tssr4575 15 34248731 to 34248737 6 - TSS region transcription start site region 4575
Gm18949 15 34268527 to 34269829 1302 - pseudogene predicted gene, 18949
Tssr133964 15 34269862 to 34269863 1 - TSS region transcription start site region 133964
Gm25809 15 34288819 to 34288870 51 - snoRNA gene predicted gene, 25809
D15Mit1004 15 34290327 to 34290459 132 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 1004
Cpgi7007 15 34306395 to 34307203 808 CpG island CpG island 7007
Matn2 15 34306654 to 34436242 129588 + protein coding gene matrilin 2
Tssr131034 15 34306666 to 34306757 91 + TSS region transcription start site region 131034
Tssr131035 15 34306767 to 34306784 17 + TSS region transcription start site region 131035
9430069I07Rik 15 34349051 to 34357872 8821 - protein coding gene RIKEN cDNA 9430069I07 gene
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12
Tssr131036 15 34434177 to 34434204 27 + TSS region transcription start site region 131036
Rpl30 15 34440505 to 34443276 2771 - protein coding gene ribosomal protein L30
Gm24523 15 34440791 to 34440922 131 - snoRNA gene predicted gene, 24523
Cpgi7008 15 34442899 to 34443863 964 CpG island CpG island 7008
Tssr133965 15 34442935 to 34442970 35 - TSS region transcription start site region 133965
D730044K07Rik 15 34442980 to 34444812 1832 + unclassified gene RIKEN cDNA D730044K07 gene
Tssr133966 15 34443161 to 34443166 5 - TSS region transcription start site region 133966
Tssr133967 15 34443176 to 34443204 28 - TSS region transcription start site region 133967
Tssr133968 15 34443209 to 34443227 18 - TSS region transcription start site region 133968
Tssr133969 15 34443229 to 34443272 43 - TSS region transcription start site region 133969
Tssr131037 15 34443296 to 34443370 74 + TSS region transcription start site region 131037
Tssr133970 15 34443508 to 34443574 66 - TSS region transcription start site region 133970
Tssr133971 15 34443646 to 34443666 20 - TSS region transcription start site region 133971
Tssr133972 15 34443725 to 34443733 8 - TSS region transcription start site region 133972
Tssr131038 15 34453285 to 34453303 18 + TSS region transcription start site region 131038
Erich5 15 34453312 to 34473892 20580 + protein coding gene glutamate rich 5
Cpgi7009 15 34453327 to 34453897 570 CpG island CpG island 7009
Gm49188 15 34481707 to 34483829 2122 + unclassified gene predicted gene, 49188
Rida 15 34484022 to 34495246 11224 - protein coding gene reactive intermediate imine deaminase A homolog
Tssr133973 15 34495150 to 34495159 9 - TSS region transcription start site region 133973
Cpgi7010 15 34495163 to 34495796 633 CpG island CpG island 7010
Tssr133974 15 34495167 to 34495171 4 - TSS region transcription start site region 133974
Tssr133975 15 34495180 to 34495276 96 - TSS region transcription start site region 133975
Tssr131039 15 34495302 to 34495347 45 + TSS region transcription start site region 131039
Pop1 15 34495311 to 34530653 35342 + protein coding gene processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
Tssr131040 15 34495364 to 34495385 21 + TSS region transcription start site region 131040
Tssr131041 15 34496244 to 34496250 6 + TSS region transcription start site region 131041
Gm49195 15 34531560 to 34531698 138 + pseudogene predicted gene, 49195
Gm22208 15 34531714 to 34531823 109 + snRNA gene predicted gene, 22208
Nipal2 15 34572799 to 34679212 106413 - protein coding gene NIPA-like domain containing 2
Tssr4576 15 34609892 to 34609897 5 + TSS region transcription start site region 4576
9030408N04Rik 15 34665271 to 34666051 780 unclassified gene RIKEN cDNA 9030408N04 gene
Tssr131042 15 34674997 to 34675007 10 + TSS region transcription start site region 131042
4930413F20Rik 15 34675073 to 34679204 4131 + antisense lncRNA gene RIKEN cDNA 4930413F20 gene
Cpgi7011 15 34678286 to 34678970 684 CpG island CpG island 7011
Tssr133976 15 34678694 to 34678746 52 - TSS region transcription start site region 133976
Tssr133977 15 34678755 to 34678802 47 - TSS region transcription start site region 133977
Tssr133978 15 34678805 to 34678827 22 - TSS region transcription start site region 133978
Tssr133979 15 34678828 to 34678851 23 - TSS region transcription start site region 133979
Tssr133980 15 34678876 to 34678892 16 - TSS region transcription start site region 133980
Tssr133981 15 34679175 to 34679208 33 - TSS region transcription start site region 133981
Gm32970 15 34744970 to 34838442 93472 - protein coding gene predicted gene, 32970
Gm48932 15 34823180 to 34826429 3249 - unclassified gene predicted gene, 48932
Cpgi7012 15 34837076 to 34838830 1754 CpG island CpG island 7012
Kcns2 15 34837355 to 34843407 6052 + protein coding gene K+ voltage-gated channel, subfamily S, 2
Stk3 15 34875499 to 35155895 280396 - protein coding gene serine/threonine kinase 3
Tssr133982 15 34876210 to 34876228 18 - TSS region transcription start site region 133982
Tssr133983 15 34876330 to 34876341 11 - TSS region transcription start site region 133983
Tssr133984 15 34878822 to 34878832 10 - TSS region transcription start site region 133984
Tssr133985 15 34983344 to 34983356 12 - TSS region transcription start site region 133985
Tssr133986 15 34995289 to 34995292 3 - TSS region transcription start site region 133986
Tssr133987 15 34996083 to 34996119 36 - TSS region transcription start site region 133987
Tssr131043 15 35024027 to 35024069 42 + TSS region transcription start site region 131043
Tssr131044 15 35041205 to 35041207 2 + TSS region transcription start site region 131044
Tssr133988 15 35062367 to 35062390 23 - TSS region transcription start site region 133988
Tssr133989 15 35062396 to 35062407 11 - TSS region transcription start site region 133989
Tssr133990 15 35150730 to 35150736 6 - TSS region transcription start site region 133990
Cpgi7013 15 35155218 to 35156106 888 CpG island CpG island 7013
Tssr133991 15 35155651 to 35155732 81 - TSS region transcription start site region 133991
Tssr133992 15 35155758 to 35155793 35 - TSS region transcription start site region 133992
Gm33497 15 35200107 to 35270303 70196 + lincRNA gene predicted gene, 33497
Tssr131045 15 35200931 to 35200974 43 + TSS region transcription start site region 131045
Tssr131046 15 35267530 to 35267565 35 + TSS region transcription start site region 131046
D15Dcr6 15 35292428 to 35292523 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 6
Cpgi7014 15 35292903 to 35294264 1361 CpG island CpG island 7014
Tssr133993 15 35295088 to 35295104 16 - TSS region transcription start site region 133993
Cpgi7015 15 35295925 to 35297121 1196 CpG island CpG island 7015
Tssr131047 15 35296090 to 35296112 22 + TSS region transcription start site region 131047
Osr2 15 35296098 to 35303305 7207 + protein coding gene odd-skipped related 2
Tssr131048 15 35296118 to 35296134 16 + TSS region transcription start site region 131048
Cpgi7016 15 35298839 to 35299054 215 CpG island CpG island 7016
Cpgi7017 15 35299606 to 35300690 1084 CpG island CpG island 7017
Cpgi7018 15 35302415 to 35303034 619 CpG island CpG island 7018
Tssr131049 15 35303589 to 35303594 5 + TSS region transcription start site region 131049
BC048602 15 35307010 to 35328535 21525 - lincRNA gene cDNA sequence BC048602
Tssr131050 15 35313273 to 35313314 41 + TSS region transcription start site region 131050
Cpgi7019 15 35326309 to 35326961 652 CpG island CpG island 7019
Gm33584 15 35328990 to 35340366 11376 + lncRNA gene predicted gene, 33584
Tssr131051 15 35329171 to 35329192 21 + TSS region transcription start site region 131051
Gm48960 15 35368453 to 35373147 4694 - antisense lncRNA gene predicted gene, 48960
Cpgi7020 15 35371010 to 35372067 1057 CpG island CpG island 7020
Tssr131052 15 35371073 to 35371094 21 + TSS region transcription start site region 131052
Tssr131053 15 35371109 to 35371138 29 + TSS region transcription start site region 131053
Tssr131054 15 35371155 to 35371168 13 + TSS region transcription start site region 131054
Vps13b 15 35371160 to 35931229 560069 + protein coding gene vacuolar protein sorting 13B
Tssr131055 15 35371253 to 35371260 7 + TSS region transcription start site region 131055
Tssr131056 15 35371293 to 35371369 76 + TSS region transcription start site region 131056
Tssr131057 15 35371498 to 35371593 95 + TSS region transcription start site region 131057