Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:33093875-34277883

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpq 15 33083129 to 33594552 511423 + protein coding gene carboxypeptidase Q
Tssr131000 15 33221380 to 33221391 11 + TSS region transcription start site region 131000
Tssr131001 15 33282139 to 33282152 13 + TSS region transcription start site region 131001
1700084J12Rik 15 33405209 to 33405939 730 - pseudogene RIKEN cDNA 1700084J12 gene
Tssr4574 15 33465149 to 33465150 1 + TSS region transcription start site region 4574
Cocia16 15 33497411 to 45277417 11780006 QTL cocaine induced activation 16
Tssr133954 15 33550727 to 33550746 19 - TSS region transcription start site region 133954
9430031J08Rik 15 33557051 to 33558236 1185 unclassified gene RIKEN cDNA 9430031J08 gene
Gm24476 15 33589606 to 33589736 130 - rRNA gene predicted gene, 24476
4930592A05Rik 15 33593881 to 33653436 59555 - antisense lncRNA gene RIKEN cDNA 4930592A05 gene
5730407I07Rik 15 33597589 to 33599581 1992 protein coding gene RIKEN cDNA 5730407I07 gene
Tspyl5 15 33683875 to 33687883 4008 - protein coding gene testis-specific protein, Y-encoded-like 5
Cpgi7004 15 33687036 to 33688084 1048 CpG island CpG island 7004
Tssr133955 15 33687804 to 33687835 31 - TSS region transcription start site region 133955
Tssr133956 15 33687840 to 33687864 24 - TSS region transcription start site region 133956
Gm49088 15 33757470 to 33757789 319 - pseudogene predicted gene, 49088
Gm49089 15 33831448 to 33834353 2905 + unclassified gene predicted gene, 49089
Tssr131002 15 33861184 to 33861188 4 + TSS region transcription start site region 131002
4933414I06Rik 15 33929572 to 33930418 846 unclassified non-coding RNA gene RIKEN cDNA 4933414I06 gene
Gm9643 15 34012652 to 34013022 370 + pseudogene predicted gene 9643
Gm41290 15 34022160 to 34037828 15668 - lincRNA gene predicted gene, 41290
Tssr131003 15 34050419 to 34050443 24 + TSS region transcription start site region 131003
Gm49091 15 34053118 to 34053267 149 + pseudogene predicted gene, 49091
Tssr131004 15 34053752 to 34053761 9 + TSS region transcription start site region 131004
Tssr133957 15 34068205 to 34068225 20 - TSS region transcription start site region 133957
Tssr133958 15 34068240 to 34068251 11 - TSS region transcription start site region 133958
Tssr133959 15 34081359 to 34081361 2 - TSS region transcription start site region 133959
Gm41291 15 34081742 to 34083032 1290 - protein coding gene predicted gene, 41291
Cpgi7005 15 34082186 to 34083783 1597 CpG island CpG island 7005
Tssr131005 15 34082221 to 34082232 11 + TSS region transcription start site region 131005
Tssr133960 15 34082575 to 34082593 18 - TSS region transcription start site region 133960
Tssr133961 15 34082609 to 34082637 28 - TSS region transcription start site region 133961
Tssr131006 15 34082664 to 34082734 70 + TSS region transcription start site region 131006
Mtdh 15 34082719 to 34143537 60818 + protein coding gene metadherin
Tssr131007 15 34082740 to 34082756 16 + TSS region transcription start site region 131007
Tssr131008 15 34082764 to 34082775 11 + TSS region transcription start site region 131008
Tssr131009 15 34082789 to 34082836 47 + TSS region transcription start site region 131009
Tssr131010 15 34083002 to 34083010 8 + TSS region transcription start site region 131010
Tssr131011 15 34083011 to 34083020 9 + TSS region transcription start site region 131011
Tssr131012 15 34083029 to 34083038 9 + TSS region transcription start site region 131012
Tssr133962 15 34083240 to 34083263 23 - TSS region transcription start site region 133962
Tssr131013 15 34083303 to 34083319 16 + TSS region transcription start site region 131013
Tssr131014 15 34083327 to 34083336 9 + TSS region transcription start site region 131014
Tssr131015 15 34083346 to 34083353 7 + TSS region transcription start site region 131015
Tssr131016 15 34083369 to 34083372 3 + TSS region transcription start site region 131016
Tssr131017 15 34099508 to 34099531 23 + TSS region transcription start site region 131017
Tssr133963 15 34099516 to 34099533 17 - TSS region transcription start site region 133963
Tssr131018 15 34123678 to 34123689 11 + TSS region transcription start site region 131018
Tssr131019 15 34123712 to 34123728 16 + TSS region transcription start site region 131019
9930017N22Rik 15 34126944 to 34130688 3744 + unclassified gene RIKEN cDNA 9930017N22 gene
Tssr131020 15 34131153 to 34131187 34 + TSS region transcription start site region 131020
Tssr131021 15 34131213 to 34131250 37 + TSS region transcription start site region 131021
Tssr131022 15 34133505 to 34133554 49 + TSS region transcription start site region 131022
Tssr131023 15 34134315 to 34134324 9 + TSS region transcription start site region 131023
Tssr131024 15 34134359 to 34134401 42 + TSS region transcription start site region 131024
D15Mit55 15 34135807 to 34135910 103 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 55
Gm24500 15 34139253 to 34139376 123 - snoRNA gene predicted gene, 24500
Tssr131025 15 34141125 to 34141167 42 + TSS region transcription start site region 131025
Tssr131026 15 34142522 to 34142530 8 + TSS region transcription start site region 131026
Tssr131027 15 34142960 to 34142965 5 + TSS region transcription start site region 131027
Tssr131028 15 34143061 to 34143104 43 + TSS region transcription start site region 131028
Tssr131029 15 34143921 to 34143928 7 + TSS region transcription start site region 131029
Gm38594 15 34152562 to 34166892 14330 - lncRNA gene predicted gene, 38594
Cpgi7006 15 34237784 to 34238904 1120 CpG island CpG island 7006
Laptm4b 15 34238026 to 34284295 46269 + protein coding gene lysosomal-associated protein transmembrane 4B
Tssr131030 15 34238061 to 34238062 1 + TSS region transcription start site region 131030
Tssr131031 15 34238108 to 34238177 69 + TSS region transcription start site region 131031
Tssr131032 15 34238178 to 34238189 11 + TSS region transcription start site region 131032
Tssr131033 15 34238735 to 34238746 11 + TSS region transcription start site region 131033
Tssr4575 15 34248731 to 34248737 6 - TSS region transcription start site region 4575
Gm18949 15 34268527 to 34269829 1302 - pseudogene predicted gene, 18949
Tssr133964 15 34269862 to 34269863 1 - TSS region transcription start site region 133964