Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:32987036-34388084

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdc2 15 32920723 to 33034721 113998 + protein coding gene syndecan 2
D15Mit204 15 32994484 to 32994622 138 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 204
D15Mit7 15 33016480 to 33016589 109 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 7
Criq1 15 33033808 to 33033808 0 QTL Citrobacter rodentium infection QTL 1
Gm32764 15 33046574 to 33070155 23581 - lincRNA gene predicted gene, 32764
Tssr133953 15 33073556 to 33073562 6 - TSS region transcription start site region 133953
Tssr130997 15 33083110 to 33083147 37 + TSS region transcription start site region 130997
Cpq 15 33083129 to 33594552 511423 + protein coding gene carboxypeptidase Q
Tssr130998 15 33083154 to 33083166 12 + TSS region transcription start site region 130998
Tssr130999 15 33083213 to 33083295 82 + TSS region transcription start site region 130999
Tssr131000 15 33221380 to 33221391 11 + TSS region transcription start site region 131000
Tssr131001 15 33282139 to 33282152 13 + TSS region transcription start site region 131001
1700084J12Rik 15 33405209 to 33405939 730 - pseudogene RIKEN cDNA 1700084J12 gene
Tssr4574 15 33465149 to 33465150 1 + TSS region transcription start site region 4574
Cocia16 15 33497411 to 45277417 11780006 QTL cocaine induced activation 16
Tssr133954 15 33550727 to 33550746 19 - TSS region transcription start site region 133954
9430031J08Rik 15 33557051 to 33558236 1185 unclassified gene RIKEN cDNA 9430031J08 gene
Gm24476 15 33589606 to 33589736 130 - rRNA gene predicted gene, 24476
4930592A05Rik 15 33593881 to 33653436 59555 - antisense lncRNA gene RIKEN cDNA 4930592A05 gene
5730407I07Rik 15 33597589 to 33599581 1992 protein coding gene RIKEN cDNA 5730407I07 gene
Tspyl5 15 33683875 to 33687883 4008 - protein coding gene testis-specific protein, Y-encoded-like 5
Cpgi7004 15 33687036 to 33688084 1048 CpG island CpG island 7004
Tssr133955 15 33687804 to 33687835 31 - TSS region transcription start site region 133955
Tssr133956 15 33687840 to 33687864 24 - TSS region transcription start site region 133956
Gm49088 15 33757470 to 33757789 319 - pseudogene predicted gene, 49088
Gm49089 15 33831448 to 33834353 2905 + unclassified gene predicted gene, 49089
Tssr131002 15 33861184 to 33861188 4 + TSS region transcription start site region 131002
4933414I06Rik 15 33929572 to 33930418 846 unclassified non-coding RNA gene RIKEN cDNA 4933414I06 gene
Gm9643 15 34012652 to 34013022 370 + pseudogene predicted gene 9643
Gm41290 15 34022160 to 34037828 15668 - lincRNA gene predicted gene, 41290
Tssr131003 15 34050419 to 34050443 24 + TSS region transcription start site region 131003
Gm49091 15 34053118 to 34053267 149 + pseudogene predicted gene, 49091
Tssr131004 15 34053752 to 34053761 9 + TSS region transcription start site region 131004
Tssr133957 15 34068205 to 34068225 20 - TSS region transcription start site region 133957
Tssr133958 15 34068240 to 34068251 11 - TSS region transcription start site region 133958
Tssr133959 15 34081359 to 34081361 2 - TSS region transcription start site region 133959
Gm41291 15 34081742 to 34083032 1290 - protein coding gene predicted gene, 41291
Cpgi7005 15 34082186 to 34083783 1597 CpG island CpG island 7005
Tssr131005 15 34082221 to 34082232 11 + TSS region transcription start site region 131005
Tssr133960 15 34082575 to 34082593 18 - TSS region transcription start site region 133960
Tssr133961 15 34082609 to 34082637 28 - TSS region transcription start site region 133961
Tssr131006 15 34082664 to 34082734 70 + TSS region transcription start site region 131006
Mtdh 15 34082719 to 34143537 60818 + protein coding gene metadherin
Tssr131007 15 34082740 to 34082756 16 + TSS region transcription start site region 131007
Tssr131008 15 34082764 to 34082775 11 + TSS region transcription start site region 131008
Tssr131009 15 34082789 to 34082836 47 + TSS region transcription start site region 131009
Tssr131010 15 34083002 to 34083010 8 + TSS region transcription start site region 131010
Tssr131011 15 34083011 to 34083020 9 + TSS region transcription start site region 131011
Tssr131012 15 34083029 to 34083038 9 + TSS region transcription start site region 131012
Tssr133962 15 34083240 to 34083263 23 - TSS region transcription start site region 133962
Tssr131013 15 34083303 to 34083319 16 + TSS region transcription start site region 131013
Tssr131014 15 34083327 to 34083336 9 + TSS region transcription start site region 131014
Tssr131015 15 34083346 to 34083353 7 + TSS region transcription start site region 131015
Tssr131016 15 34083369 to 34083372 3 + TSS region transcription start site region 131016
Tssr131017 15 34099508 to 34099531 23 + TSS region transcription start site region 131017
Tssr133963 15 34099516 to 34099533 17 - TSS region transcription start site region 133963
Tssr131018 15 34123678 to 34123689 11 + TSS region transcription start site region 131018
Tssr131019 15 34123712 to 34123728 16 + TSS region transcription start site region 131019
9930017N22Rik 15 34126944 to 34130688 3744 + unclassified gene RIKEN cDNA 9930017N22 gene
Tssr131020 15 34131153 to 34131187 34 + TSS region transcription start site region 131020
Tssr131021 15 34131213 to 34131250 37 + TSS region transcription start site region 131021
Tssr131022 15 34133505 to 34133554 49 + TSS region transcription start site region 131022
Tssr131023 15 34134315 to 34134324 9 + TSS region transcription start site region 131023
Tssr131024 15 34134359 to 34134401 42 + TSS region transcription start site region 131024
D15Mit55 15 34135807 to 34135910 103 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 55
Gm24500 15 34139253 to 34139376 123 - snoRNA gene predicted gene, 24500
Tssr131025 15 34141125 to 34141167 42 + TSS region transcription start site region 131025
Tssr131026 15 34142522 to 34142530 8 + TSS region transcription start site region 131026
Tssr131027 15 34142960 to 34142965 5 + TSS region transcription start site region 131027
Tssr131028 15 34143061 to 34143104 43 + TSS region transcription start site region 131028
Tssr131029 15 34143921 to 34143928 7 + TSS region transcription start site region 131029
Gm38594 15 34152562 to 34166892 14330 - lncRNA gene predicted gene, 38594
Cpgi7006 15 34237784 to 34238904 1120 CpG island CpG island 7006
Laptm4b 15 34238026 to 34284295 46269 + protein coding gene lysosomal-associated protein transmembrane 4B
Tssr131030 15 34238061 to 34238062 1 + TSS region transcription start site region 131030
Tssr131031 15 34238108 to 34238177 69 + TSS region transcription start site region 131031
Tssr131032 15 34238178 to 34238189 11 + TSS region transcription start site region 131032
Tssr131033 15 34238735 to 34238746 11 + TSS region transcription start site region 131033
Tssr4575 15 34248731 to 34248737 6 - TSS region transcription start site region 4575
Gm18949 15 34268527 to 34269829 1302 - pseudogene predicted gene, 18949
Tssr133964 15 34269862 to 34269863 1 - TSS region transcription start site region 133964
Gm25809 15 34288819 to 34288870 51 - snoRNA gene predicted gene, 25809
D15Mit1004 15 34290327 to 34290459 132 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 1004
Cpgi7007 15 34306395 to 34307203 808 CpG island CpG island 7007
Matn2 15 34306654 to 34436242 129588 + protein coding gene matrilin 2
Tssr131034 15 34306666 to 34306757 91 + TSS region transcription start site region 131034
Tssr131035 15 34306767 to 34306784 17 + TSS region transcription start site region 131035
9430069I07Rik 15 34349051 to 34357872 8821 - protein coding gene RIKEN cDNA 9430069I07 gene
Opfaq12 15 34358765 to 38447657 4088892 QTL open field activity QTL 12