Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:3281556-4771567

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc152 15 3280588 to 3303526 22938 - protein coding gene coiled-coil domain containing 152
Tssr130417 15 3290758 to 3290771 13 + TSS region transcription start site region 130417
Tssr130418 15 3290847 to 3290862 15 + TSS region transcription start site region 130418
Tssr130419 15 3291106 to 3291145 39 + TSS region transcription start site region 130419
Gm41254 15 3298205 to 3385627 87422 + lncRNA gene predicted gene, 41254
Tssr130420 15 3303287 to 3303290 3 + TSS region transcription start site region 130420
Tssr133569 15 3303521 to 3303569 48 - TSS region transcription start site region 133569
Ghr 15 3317755 to 3583352 265597 - protein coding gene growth hormone receptor
Tssr133570 15 3341102 to 3341106 4 - TSS region transcription start site region 133570
D15Mit174 15 3444907 to 3445032 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 174
Sicd2 15 3444907 to 71325689 67880782 QTL seizure-induced cell death 2
Sluc24 15 3460212 to 3460347 135 QTL susceptibility to lung cancer 24
Scfq2 15 3460212 to 78717086 75256874 QTL subcutaneous fat pad weight QTL 2
Bdt5 15 3460212 to 3460347 135 QTL bone density traits 5
Cliff 15 3460212 to 3460347 135 QTL cliff drop aversion
Tglq3 15 3460212 to 3460347 135 QTL triglyceride QTL 3
Nhdlq7 15 3460212 to 3460347 135 QTL non-HDL QTL 7
D15Mit13 15 3460212 to 3460347 135 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 13
Faq8 15 3460212 to 3460347 135 QTL fluctuating asymmetry QTL 8
Epfpq4 15 3460212 to 78717086 75256874 QTL epididymal fat percentage QTL 4
Mobq4 15 3460212 to 3460347 135 QTL multigenic obesity QTL 4
Tailaq4 15 3460212 to 78717086 75256874 QTL tail length adjusted QTL 4
Tailq6 15 3460212 to 78717086 75256874 QTL tail length QTL 6
W3q7 15 3460212 to 78717086 75256874 QTL weight 3 weeks QTL 7
Tssr133571 15 3463852 to 3463858 6 - TSS region transcription start site region 133571
Tssr133572 15 3523215 to 3523219 4 - TSS region transcription start site region 133572
Tssr133573 15 3540950 to 3540954 4 - TSS region transcription start site region 133573
Tssr133574 15 3542350 to 3542361 11 - TSS region transcription start site region 133574
Tssr133575 15 3542371 to 3542380 9 - TSS region transcription start site region 133575
Tssr133576 15 3542397 to 3542408 11 - TSS region transcription start site region 133576
Tssr133577 15 3542411 to 3542421 10 - TSS region transcription start site region 133577
Tssr133578 15 3542437 to 3542455 18 - TSS region transcription start site region 133578
Tssr133579 15 3542457 to 3542484 27 - TSS region transcription start site region 133579
Tssr133580 15 3542544 to 3542574 30 - TSS region transcription start site region 133580
Tssr133581 15 3542615 to 3542632 17 - TSS region transcription start site region 133581
Tssr133582 15 3568703 to 3568705 2 - TSS region transcription start site region 133582
Tssr133583 15 3582136 to 3582151 15 - TSS region transcription start site region 133583
Tssr133584 15 3582161 to 3582181 20 - TSS region transcription start site region 133584
Cpgi6908 15 3582203 to 3582403 200 CpG island CpG island 6908
Tssr133585 15 3582329 to 3582351 22 - TSS region transcription start site region 133585
Tssr133586 15 3582624 to 3582677 53 - TSS region transcription start site region 133586
Cpgi6909 15 3582903 to 3583614 711 CpG island CpG island 6909
Tssr133587 15 3583146 to 3583187 41 - TSS region transcription start site region 133587
Tssr133588 15 3583191 to 3583241 50 - TSS region transcription start site region 133588
Tssr133589 15 3583391 to 3583411 20 - TSS region transcription start site region 133589
Tssr133590 15 3583428 to 3583441 13 - TSS region transcription start site region 133590
Tssr133591 15 3583464 to 3583542 78 - TSS region transcription start site region 133591
Gm22031 15 3603272 to 3603397 125 - snRNA gene predicted gene, 22031
Gm41255 15 3611374 to 3614906 3532 - lncRNA gene predicted gene, 41255
Tssr130421 15 3637418 to 3637428 10 + TSS region transcription start site region 130421
Tssr130422 15 3637448 to 3637458 10 + TSS region transcription start site region 130422
Gm18420 15 3671986 to 3672806 820 + pseudogene predicted gene, 18420
Gm4823 15 3745892 to 3746875 983 - pseudogene predicted gene 4823
Gm23228 15 3798912 to 3799181 269 + unclassified non-coding RNA gene predicted gene, 23228
Gm17873 15 3929985 to 3930560 575 + pseudogene predicted gene, 17873
Fbxo4 15 3965445 to 3979573 14128 - protein coding gene F-box protein 4
Cpgi6910 15 3978974 to 3979757 783 CpG island CpG island 6910
Tssr133592 15 3979432 to 3979562 130 - TSS region transcription start site region 133592
AW549877 15 3982035 to 3995744 13709 - protein coding gene expressed sequence AW549877
Tssr133593 15 3984846 to 3984859 13 - TSS region transcription start site region 133593
Tssr133594 15 3986832 to 3986836 4 - TSS region transcription start site region 133594
Gm49286 15 3991994 to 3992095 101 - pseudogene predicted gene, 49286
Tssr133595 15 3995244 to 3995245 1 - TSS region transcription start site region 133595
Cpgi6911 15 3995361 to 3996293 932 CpG island CpG island 6911
Tssr133596 15 3995708 to 3995760 52 - TSS region transcription start site region 133596
Gm2093 15 3996039 to 4015858 19819 + lincRNA gene predicted gene 2093
BC037032 15 4020114 to 4027405 7291 - lncRNA gene cDNA Sequence BC037032
Cpgi6912 15 4026304 to 4027601 1297 CpG island CpG island 6912
Oxct1 15 4026428 to 4155344 128916 + protein coding gene 3-oxoacid CoA transferase 1
Tssr130423 15 4026460 to 4026471 11 + TSS region transcription start site region 130423
Tssr130424 15 4026556 to 4026567 11 + TSS region transcription start site region 130424
Tssr130425 15 4026612 to 4026695 83 + TSS region transcription start site region 130425
Tssr130426 15 4026696 to 4026763 67 + TSS region transcription start site region 130426
Tssr133597 15 4027345 to 4027355 10 - TSS region transcription start site region 133597
Tssr133598 15 4027394 to 4027419 25 - TSS region transcription start site region 133598
Tssr130427 15 4035465 to 4035466 1 + TSS region transcription start site region 130427
Gm15632 15 4069226 to 4072032 2806 - antisense lncRNA gene predicted gene 15632
Tssr130428 15 4069311 to 4069318 7 + TSS region transcription start site region 130428
Tssr130429 15 4069348 to 4069357 9 + TSS region transcription start site region 130429
Tssr4539 15 4077168 to 4077170 2 + TSS region transcription start site region 4539
Tssr130430 15 4112803 to 4112844 41 + TSS region transcription start site region 130430
Tssr4540 15 4119959 to 4119967 8 + TSS region transcription start site region 4540
Tssr4541 15 4164960 to 4164964 4 + TSS region transcription start site region 4541
D15Mit125 15 4202600 to 4202748 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 125
Gm49301 15 4244312 to 4244645 333 - pseudogene predicted gene, 49301
Tssr130431 15 4375462 to 4375511 49 + TSS region transcription start site region 130431
Cpgi6913 15 4375479 to 4376205 726 CpG island CpG island 6913
Plcxd3 15 4375491 to 4575553 200062 + protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 3
Tssr130432 15 4375574 to 4375623 49 + TSS region transcription start site region 130432
Tssr130433 15 4375626 to 4375656 30 + TSS region transcription start site region 130433
Tssr130434 15 4375658 to 4375679 21 + TSS region transcription start site region 130434
Tssr133599 15 4642969 to 4642972 3 - TSS region transcription start site region 133599
C6 15 4727067 to 4804045 76978 + protein coding gene complement component 6
Tssr130435 15 4727175 to 4727201 26 + TSS region transcription start site region 130435
Tssr130436 15 4727202 to 4727230 28 + TSS region transcription start site region 130436
Tssr130437 15 4727265 to 4727282 17 + TSS region transcription start site region 130437
uwl 15 12979006 to 3460212 -9518794 heritable phenotypic marker underwhite-like