Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:31024815-33484819

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnd2 15 30172593 to 31029341 856748 + protein coding gene catenin (cadherin associated protein), delta 2
Tssr130950 15 31027774 to 31027780 6 + TSS region transcription start site region 130950
4930430F21Rik 15 31039128 to 31043331 4203 + lincRNA gene RIKEN cDNA 4930430F21 gene
Gm32011 15 31092220 to 31117266 25046 + lncRNA gene predicted gene, 32011
Tssr130951 15 31103305 to 31103309 4 + TSS region transcription start site region 130951
Gm32070 15 31131006 to 31135849 4843 - lncRNA gene predicted gene, 32070
Gm26416 15 31194205 to 31194338 133 - snoRNA gene predicted gene, 26416
Cpgi6994 15 31223666 to 31224802 1136 CpG island CpG island 6994
Tssr130952 15 31224371 to 31224400 29 + TSS region transcription start site region 130952
Dap 15 31224385 to 31274338 49953 + protein coding gene death-associated protein
Tssr130953 15 31224406 to 31224530 124 + TSS region transcription start site region 130953
Tssr133915 15 31224759 to 31224767 8 - TSS region transcription start site region 133915
Tssr130954 15 31225117 to 31225138 21 + TSS region transcription start site region 130954
Tssr130955 15 31225156 to 31225196 40 + TSS region transcription start site region 130955
Tssr130956 15 31235783 to 31235805 22 + TSS region transcription start site region 130956
D15Mit99 15 31238643 to 31238723 80 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 99
Gm41285 15 31254916 to 31263456 8540 - lncRNA gene predicted gene, 41285
Tssr133916 15 31268191 to 31268218 27 - TSS region transcription start site region 133916
Tssr130957 15 31268262 to 31268266 4 + TSS region transcription start site region 130957
Tssr130958 15 31268272 to 31268290 18 + TSS region transcription start site region 130958
Tssr130959 15 31268293 to 31268323 30 + TSS region transcription start site region 130959
Tssr130960 15 31273192 to 31273218 26 + TSS region transcription start site region 130960
Fam136b-ps 15 31276491 to 31276902 411 + pseudogene family with sequence similarity 136, member B, pseudogene
Gm49296 15 31282089 to 31283136 1047 + unclassified gene predicted gene, 49296
D15Mit38 15 31286683 to 31286817 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 38
Ankrd33b 15 31291478 to 31367726 76248 - protein coding gene ankyrin repeat domain 33B
Cpgi6995 15 31297063 to 31298018 955 CpG island CpG island 6995
Tssr133917 15 31318501 to 31318511 10 - TSS region transcription start site region 133917
Tssr133918 15 31325315 to 31325336 21 - TSS region transcription start site region 133918
Tssr130961 15 31331983 to 31331991 8 + TSS region transcription start site region 130961
Tssr130962 15 31332022 to 31332031 9 + TSS region transcription start site region 130962
Tssr133919 15 31336719 to 31336730 11 - TSS region transcription start site region 133919
Tssr133920 15 31336742 to 31336751 9 - TSS region transcription start site region 133920
Tssr130963 15 31337015 to 31337025 10 + TSS region transcription start site region 130963
Tssr133921 15 31338086 to 31338093 7 - TSS region transcription start site region 133921
Tssr133922 15 31338692 to 31338703 11 - TSS region transcription start site region 133922
Tssr4571 15 31338711 to 31338730 19 - TSS region transcription start site region 4571
Tssr130964 15 31338942 to 31338980 38 + TSS region transcription start site region 130964
Tssr130965 15 31339269 to 31339297 28 + TSS region transcription start site region 130965
Tssr4572 15 31342291 to 31342323 32 + TSS region transcription start site region 4572
Cpgi6996 15 31344765 to 31345061 296 CpG island CpG island 6996
Tssr130966 15 31350199 to 31350207 8 + TSS region transcription start site region 130966
Tssr133923 15 31356937 to 31356954 17 - TSS region transcription start site region 133923
Cpgi6997 15 31366120 to 31368111 1991 CpG island CpG island 6997
Tssr133924 15 31367490 to 31367504 14 - TSS region transcription start site region 133924
Tssr133925 15 31367527 to 31367580 53 - TSS region transcription start site region 133925
Tssr133926 15 31367731 to 31367791 60 - TSS region transcription start site region 133926
Gm49300 15 31368362 to 31370305 1943 + unclassified gene predicted gene, 49300
Gm41286 15 31401062 to 31408707 7645 - lncRNA gene predicted gene, 41286
Ropn1l 15 31441210 to 31453689 12479 - protein coding gene ropporin 1-like
Gm6361 15 31446383 to 31446817 434 - pseudogene predicted gene 6361
Tssr133927 15 31449039 to 31449065 26 - TSS region transcription start site region 133927
Cpgi6998 15 31453297 to 31453938 641 CpG island CpG island 6998
Tssr133928 15 31453496 to 31453507 11 - TSS region transcription start site region 133928
Tssr133929 15 31453564 to 31453694 130 - TSS region transcription start site region 133929
Gm49208 15 31453738 to 31454901 1163 + bidirectional promoter lncRNA gene predicted gene, 49208
March6 15 31455899 to 31531048 75149 - protein coding gene membrane-associated ring finger (C3HC4) 6
Gm49214 15 31462281 to 31462631 350 + pseudogene predicted gene, 49214
Tssr133930 15 31467907 to 31467921 14 - TSS region transcription start site region 133930
Tssr133931 15 31467938 to 31467952 14 - TSS region transcription start site region 133931
Tssr133932 15 31467971 to 31467980 9 - TSS region transcription start site region 133932
Gm49216 15 31481756 to 31486929 5173 - sense overlapping lncRNA gene predicted gene, 49216
Tssr133933 15 31503539 to 31503542 3 - TSS region transcription start site region 133933
Gm49215 15 31520924 to 31521273 349 - pseudogene predicted gene, 49215
Tssr133934 15 31521345 to 31521349 4 - TSS region transcription start site region 133934
Cpgi6999 15 31530110 to 31531835 1725 CpG island CpG island 6999
Tssr133935 15 31530823 to 31530833 10 - TSS region transcription start site region 133935
Tssr133936 15 31530838 to 31530849 11 - TSS region transcription start site region 133936
Tssr133937 15 31530976 to 31530992 16 - TSS region transcription start site region 133937
Tssr133938 15 31530999 to 31531069 70 - TSS region transcription start site region 133938
Tssr133939 15 31531081 to 31531092 11 - TSS region transcription start site region 133939
Gm41287 15 31531101 to 31545869 14768 + lncRNA gene predicted gene, 41287
Tssr130967 15 31565365 to 31565406 41 + TSS region transcription start site region 130967
Cmbl 15 31565389 to 31590119 24730 + protein coding gene carboxymethylenebutenolidase-like (Pseudomonas)
Tssr130968 15 31565410 to 31565425 15 + TSS region transcription start site region 130968
Tssr130969 15 31568817 to 31568848 31 + TSS region transcription start site region 130969
Tssr130970 15 31568851 to 31568925 74 + TSS region transcription start site region 130970
Tssr130971 15 31572160 to 31572175 15 + TSS region transcription start site region 130971
Tssr130972 15 31572179 to 31572197 18 + TSS region transcription start site region 130972
Cct5 15 31590813 to 31601804 10991 - protein coding gene chaperonin containing Tcp1, subunit 5 (epsilon)
Tssr4573 15 31595809 to 31595852 43 - TSS region transcription start site region 4573
Cpgi7000 15 31600886 to 31602631 1745 CpG island CpG island 7000
Tssr133940 15 31601506 to 31601558 52 - TSS region transcription start site region 133940
Tssr133941 15 31601716 to 31601783 67 - TSS region transcription start site region 133941
Tssr133942 15 31601786 to 31601812 26 - TSS region transcription start site region 133942
Atpsckmt 15 31602069 to 31617537 15468 + protein coding gene ATP synthase C subunit lysine N-methyltransferase
Tssr130973 15 31602106 to 31602132 26 + TSS region transcription start site region 130973
Tssr130974 15 31602138 to 31602158 20 + TSS region transcription start site region 130974
Tssr130975 15 31604794 to 31604832 38 + TSS region transcription start site region 130975
Gm49284 15 31621972 to 31624035 2063 + unclassified gene predicted gene, 49284
Gm32383 15 31635718 to 31640458 4740 + lncRNA gene predicted gene, 32383
Gm46522 15 31654770 to 31655566 796 - pseudogene predicted gene, 46522
Gm18003 15 31730899 to 31733638 2739 - pseudogene predicted gene, 18003
Tssr133943 15 31735401 to 31735410 9 - TSS region transcription start site region 133943
Tssr133944 15 31735419 to 31735427 8 - TSS region transcription start site region 133944
D15Mit111.1 15 31927310 to 31927456 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 111.1
D15Mit111 15 31927441 to 31927610 169 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 111
Eila3 15 31927441 to 31927610 169 QTL ethanol induced locomotor activity 3
Bbaa14 15 31927441 to 31927610 169 QTL B.burgdorferi-associated arthritis 14
Nstr2 15 31927441 to 31927610 169 QTL nerve sheath tumor resistance QTL 2
Gm49285 15 32049951 to 32051353 1402 + unclassified gene predicted gene, 49285
Gm32499 15 32156356 to 32240471 84115 + lncRNA gene predicted gene, 32499
Tas2r119 15 32177289 to 32178294 1005 + protein coding gene taste receptor, type 2, member 119
4930518I17Rik 15 32226385 to 32227040 655 + lincRNA gene RIKEN cDNA 4930518I17 gene
Snhg18 15 32240568 to 32244662 4094 - lincRNA gene small nucleolar RNA host gene 18
Snord123 15 32241853 to 32241923 70 - snoRNA gene small nucleolar RNA, C/D box 123
Cpgi7001 15 32244261 to 32246310 2049 CpG island CpG island 7001
Tssr133945 15 32244413 to 32244438 25 - TSS region transcription start site region 133945
Tssr133946 15 32244443 to 32244454 11 - TSS region transcription start site region 133946
Tssr133947 15 32244567 to 32244615 48 - TSS region transcription start site region 133947
Tssr133948 15 32244621 to 32244630 9 - TSS region transcription start site region 133948
Tssr133949 15 32244632 to 32244670 38 - TSS region transcription start site region 133949
Tssr130976 15 32244801 to 32244836 35 + TSS region transcription start site region 130976
Sema5a 15 32244810 to 32696341 451531 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
Tssr130977 15 32244865 to 32244874 9 + TSS region transcription start site region 130977
Tssr130978 15 32245114 to 32245128 14 + TSS region transcription start site region 130978
Tssr133950 15 32248652 to 32248653 1 - TSS region transcription start site region 133950
Tssr130979 15 32251815 to 32251818 3 + TSS region transcription start site region 130979
Tssr130980 15 32254815 to 32254819 4 + TSS region transcription start site region 130980
Tssr130981 15 32268138 to 32268143 5 + TSS region transcription start site region 130981
Tssr130982 15 32357145 to 32357173 28 + TSS region transcription start site region 130982
Gm32562 15 32409971 to 32434440 24469 - lncRNA gene predicted gene, 32562
D15Mit137 15 32473727 to 32473866 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 137
Tssr130983 15 32481294 to 32481316 22 + TSS region transcription start site region 130983
Tssr130984 15 32489685 to 32489689 4 + TSS region transcription start site region 130984
D15Mit126 15 32578270 to 32578398 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 126
4930465K09Rik 15 32619744 to 32623505 3761 - antisense lncRNA gene RIKEN cDNA 4930465K09 gene
Tssr133951 15 32623501 to 32623508 7 - TSS region transcription start site region 133951
D15Mit54 15 32645197 to 32645324 127 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 54
Bdln2 15 32645197 to 32645324 127 QTL body length 2
Tssr130985 15 32675660 to 32675663 3 + TSS region transcription start site region 130985
Tssr130986 15 32691317 to 32691341 24 + TSS region transcription start site region 130986
Tssr130987 15 32691798 to 32691851 53 + TSS region transcription start site region 130987
Tssr130988 15 32695943 to 32695959 16 + TSS region transcription start site region 130988
Gm41289 15 32757416 to 32773152 15736 - lincRNA gene predicted gene, 41289
Tssr133952 15 32767454 to 32767481 27 - TSS region transcription start site region 133952
Gm32618 15 32778648 to 32795299 16651 + lincRNA gene predicted gene, 32618
Cpgi7002 15 32778787 to 32779221 434 CpG island CpG island 7002
Tssr130989 15 32778900 to 32778932 32 + TSS region transcription start site region 130989
Tssr130990 15 32778934 to 32778959 25 + TSS region transcription start site region 130990
Gm3065 15 32785066 to 32787194 2128 protein coding gene predicted gene 3065
Cpgi7003 15 32920659 to 32921131 472 CpG island CpG island 7003
Sdc2 15 32920723 to 33034721 113998 + protein coding gene syndecan 2
Tssr130991 15 32920782 to 32920826 44 + TSS region transcription start site region 130991
Tssr130992 15 32920837 to 32920848 11 + TSS region transcription start site region 130992
Tssr130993 15 32921080 to 32921096 16 + TSS region transcription start site region 130993
Tssr130994 15 32921104 to 32921123 19 + TSS region transcription start site region 130994
Tssr130995 15 32944359 to 32944363 4 + TSS region transcription start site region 130995
Tssr130996 15 32985577 to 32985609 32 + TSS region transcription start site region 130996
D15Mit204 15 32994484 to 32994622 138 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 204
D15Mit7 15 33016480 to 33016589 109 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 7
Criq1 15 33033808 to 33033808 0 QTL Citrobacter rodentium infection QTL 1
Gm32764 15 33046574 to 33070155 23581 - lincRNA gene predicted gene, 32764
Tssr133953 15 33073556 to 33073562 6 - TSS region transcription start site region 133953
Tssr130997 15 33083110 to 33083147 37 + TSS region transcription start site region 130997
Cpq 15 33083129 to 33594552 511423 + protein coding gene carboxypeptidase Q
Tssr130998 15 33083154 to 33083166 12 + TSS region transcription start site region 130998
Tssr130999 15 33083213 to 33083295 82 + TSS region transcription start site region 130999
Tssr131000 15 33221380 to 33221391 11 + TSS region transcription start site region 131000
Tssr131001 15 33282139 to 33282152 13 + TSS region transcription start site region 131001
1700084J12Rik 15 33405209 to 33405939 730 - pseudogene RIKEN cDNA 1700084J12 gene
Tssr4574 15 33465149 to 33465150 1 + TSS region transcription start site region 4574
Eae32 15 103517472 to 32578270 -70939202 QTL experimental allergic encephalomyelitis susceptibility 32