Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:30978293-31558323

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnd2 15 30172593 to 31029341 856748 + protein coding gene catenin (cadherin associated protein), delta 2
D15Mit202 15 30995683 to 30995798 115 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 202
Tssr130949 15 31004772 to 31004798 26 + TSS region transcription start site region 130949
Tssr130950 15 31027774 to 31027780 6 + TSS region transcription start site region 130950
4930430F21Rik 15 31039128 to 31043331 4203 + lincRNA gene RIKEN cDNA 4930430F21 gene
Gm32011 15 31092220 to 31117266 25046 + lncRNA gene predicted gene, 32011
Tssr130951 15 31103305 to 31103309 4 + TSS region transcription start site region 130951
Gm32070 15 31131006 to 31135849 4843 - lncRNA gene predicted gene, 32070
Gm26416 15 31194205 to 31194338 133 - snoRNA gene predicted gene, 26416
Cpgi6994 15 31223666 to 31224802 1136 CpG island CpG island 6994
Tssr130952 15 31224371 to 31224400 29 + TSS region transcription start site region 130952
Dap 15 31224385 to 31274338 49953 + protein coding gene death-associated protein
Tssr130953 15 31224406 to 31224530 124 + TSS region transcription start site region 130953
Tssr133915 15 31224759 to 31224767 8 - TSS region transcription start site region 133915
Tssr130954 15 31225117 to 31225138 21 + TSS region transcription start site region 130954
Tssr130955 15 31225156 to 31225196 40 + TSS region transcription start site region 130955
Tssr130956 15 31235783 to 31235805 22 + TSS region transcription start site region 130956
D15Mit99 15 31238643 to 31238723 80 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 99
Gm41285 15 31254916 to 31263456 8540 - lncRNA gene predicted gene, 41285
Tssr133916 15 31268191 to 31268218 27 - TSS region transcription start site region 133916
Tssr130957 15 31268262 to 31268266 4 + TSS region transcription start site region 130957
Tssr130958 15 31268272 to 31268290 18 + TSS region transcription start site region 130958
Tssr130959 15 31268293 to 31268323 30 + TSS region transcription start site region 130959
Tssr130960 15 31273192 to 31273218 26 + TSS region transcription start site region 130960
Fam136b-ps 15 31276491 to 31276902 411 + pseudogene family with sequence similarity 136, member B, pseudogene
Gm49296 15 31282089 to 31283136 1047 + unclassified gene predicted gene, 49296
D15Mit38 15 31286683 to 31286817 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 38
Ankrd33b 15 31291478 to 31367726 76248 - protein coding gene ankyrin repeat domain 33B
Cpgi6995 15 31297063 to 31298018 955 CpG island CpG island 6995
Tssr133917 15 31318501 to 31318511 10 - TSS region transcription start site region 133917
Tssr133918 15 31325315 to 31325336 21 - TSS region transcription start site region 133918
Tssr130961 15 31331983 to 31331991 8 + TSS region transcription start site region 130961
Tssr130962 15 31332022 to 31332031 9 + TSS region transcription start site region 130962
Tssr133919 15 31336719 to 31336730 11 - TSS region transcription start site region 133919
Tssr133920 15 31336742 to 31336751 9 - TSS region transcription start site region 133920
Tssr130963 15 31337015 to 31337025 10 + TSS region transcription start site region 130963
Tssr133921 15 31338086 to 31338093 7 - TSS region transcription start site region 133921
Tssr133922 15 31338692 to 31338703 11 - TSS region transcription start site region 133922
Tssr4571 15 31338711 to 31338730 19 - TSS region transcription start site region 4571
Tssr130964 15 31338942 to 31338980 38 + TSS region transcription start site region 130964
Tssr130965 15 31339269 to 31339297 28 + TSS region transcription start site region 130965
Tssr4572 15 31342291 to 31342323 32 + TSS region transcription start site region 4572
Cpgi6996 15 31344765 to 31345061 296 CpG island CpG island 6996
Tssr130966 15 31350199 to 31350207 8 + TSS region transcription start site region 130966
Tssr133923 15 31356937 to 31356954 17 - TSS region transcription start site region 133923
Cpgi6997 15 31366120 to 31368111 1991 CpG island CpG island 6997
Tssr133924 15 31367490 to 31367504 14 - TSS region transcription start site region 133924
Tssr133925 15 31367527 to 31367580 53 - TSS region transcription start site region 133925
Tssr133926 15 31367731 to 31367791 60 - TSS region transcription start site region 133926
Gm49300 15 31368362 to 31370305 1943 + unclassified gene predicted gene, 49300
Gm41286 15 31401062 to 31408707 7645 - lncRNA gene predicted gene, 41286
Ropn1l 15 31441210 to 31453689 12479 - protein coding gene ropporin 1-like
Gm6361 15 31446383 to 31446817 434 - pseudogene predicted gene 6361
Tssr133927 15 31449039 to 31449065 26 - TSS region transcription start site region 133927
Cpgi6998 15 31453297 to 31453938 641 CpG island CpG island 6998
Tssr133928 15 31453496 to 31453507 11 - TSS region transcription start site region 133928
Tssr133929 15 31453564 to 31453694 130 - TSS region transcription start site region 133929
Gm49208 15 31453738 to 31454901 1163 + bidirectional promoter lncRNA gene predicted gene, 49208
March6 15 31455899 to 31531048 75149 - protein coding gene membrane-associated ring finger (C3HC4) 6
Gm49214 15 31462281 to 31462631 350 + pseudogene predicted gene, 49214
Tssr133930 15 31467907 to 31467921 14 - TSS region transcription start site region 133930
Tssr133931 15 31467938 to 31467952 14 - TSS region transcription start site region 133931
Tssr133932 15 31467971 to 31467980 9 - TSS region transcription start site region 133932
Gm49216 15 31481756 to 31486929 5173 - sense overlapping lncRNA gene predicted gene, 49216
Tssr133933 15 31503539 to 31503542 3 - TSS region transcription start site region 133933
Gm49215 15 31520924 to 31521273 349 - pseudogene predicted gene, 49215
Tssr133934 15 31521345 to 31521349 4 - TSS region transcription start site region 133934
Cpgi6999 15 31530110 to 31531835 1725 CpG island CpG island 6999
Tssr133935 15 31530823 to 31530833 10 - TSS region transcription start site region 133935
Tssr133936 15 31530838 to 31530849 11 - TSS region transcription start site region 133936
Tssr133937 15 31530976 to 31530992 16 - TSS region transcription start site region 133937
Tssr133938 15 31530999 to 31531069 70 - TSS region transcription start site region 133938
Tssr133939 15 31531081 to 31531092 11 - TSS region transcription start site region 133939
Gm41287 15 31531101 to 31545869 14768 + lncRNA gene predicted gene, 41287